pycom05g27320

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0012797
Physical Location & Seq
Forward (+)
28321970 .. 28323395
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
ATGATCATGCTCAAGAGCGGCAACATGGACACTTATGCAGCCAAATGCCCCAAAAATGGTCACAAAGTTGGACCCTTTAAACCCGAAGGAAGCGGTTTTCCTTGCTTCGGACATGGATGCATGAACCAGCCTTCTATTTATCATGACTACACCAATTTGAAGGTGCCTAATTTGACTCTAAAGGGAAGGTTTTACGGGTCGTGGGATAAGGATGCAGATTTGAGCAGAGGGATGGTTGGAAACATTTCTTACCATTCTGTCACTTGGGAAAAGAAACTTGGAGAGGGGAGTTGGGTTTTCCATCATGTCTTGAGGACTTCAGCAAAGTATCCTTGGCTGATGCTTTACTTCAGATCGGACGCCACCCATGGACTTTCTGGTGGATACCATTACACTACAAGAGGGATGTCCAAAATTATTCCAGAATCGCCAAATTTTAAAGTGAGGTTCATTTTAAATGTGATCAAAGGTGGGGGTCCTAGCAGTCAATTTTATCTCATGGACATTGGGAGCTGTTGGAAGAACAGTGGGAAGCCTTGTGATGGCGATGTGACTTCAGATGTTACTAGACAGAGTGAAATGATCATAAACCCTAACATAACTTCATGGTGCCAACCAAACAACCTCAATGTGTGCCCGCCTTACCACACATTCCCTAACGGCACACGGATTCATCGCAATGACACCGCCCGCTTCCCTTACGCCGCCTACCACTTGTACTGCTCGCCGGGGAATGCGGAGTATCTCGAGCCTCCTTTTAGTTTATGTGATCCGTATAGCAATCCTCAACCTCAGGAGATAATGCAGATCTTGCCACACCCGGTTTGGGGTGAGTACGGATACCCTACAAAGCAAGGGGAGGGTTGGATTGGGGATCCAAGAACATGGGAGCTCGATGTTGGGAGGTTGTCACAATCACTTCATTTTTACCAGGATCCAGGAACTCCGCCAGCTAAAAGGCAATGGATGTCTATAGATTTGGGGACTGAAATTTTCAAAGATCCAGATCAAGTTGCTGAGTGGACTGTCAGCGACTTTGACATTCTTGTCCCTAGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

40.01

Weight (kDa)

7.19

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 1 - 350 7.3e-202 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17030
fragaria_vesca FvH4_3g07190 FvH4_3g07210
malus_domestica MD00G1008000.v1.1
prunus_persica Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1
pyrus_communis pycom05g27320
rosa_chinensis RchiOBHm_Chr5g0011941
rosa_laevigata RLG00000031871
rosa_multiflora Rmu_sc0001475.1_g000003
rosa_roxburghii Rroxscaffold_1G00064650
rosa_rugosa Rorug04G0460100
rosa_samantha Rh5AG091700 Rh5BG087500 Rh5CG101400 Rh5DG088100
rosa_wichuraiana Rw5G008000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1046
AccB1I GGYRCC 2 cut(s) 163, 609
AccBSI CCGCTC 1 cut(s) 18
AciI CCGC 8 cut(s) 18, 93, 638, 687, 691, 705, 737, 947
AclWI GGATC 6 cut(s) 764, 869, 882, 929, 942, 995
AcsI RAATTY 2 cut(s) 433, 990
AcuI CTGAAG 3 cut(s) 303, 334, 540
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 719, 836
AfiI CCNNNNNNNGG 5 cut(s) 56, 107, 542, 826, 827
AgsI TTSAA 2 cut(s) 160, 997
AjnI CCWGG 2 cut(s) 930, 937
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 3 cut(s) 513, 892, 953
AluI AGCT 3 cut(s) 513, 892, 953
Alw21I GWGCWC 1 cut(s) 894
AlwI GGATC 6 cut(s) 764, 869, 882, 929, 942, 995
Ama87I CYCGRG 1 cut(s) 746
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 433, 990
Asp700I GAANNNNTTC 1 cut(s) 244
AspA2I CCTAGG 1 cut(s) 1052
AspS9I GGNCC 2 cut(s) 71, 476
AsuC2I CCSGG 2 cut(s) 729, 821
AsuHPI GGTGA 1 cut(s) 842
AvaI CYCGRG 1 cut(s) 746
AvaII GGWCC 2 cut(s) 71, 476
AvrII CCTAGG 1 cut(s) 1052
AxyI CCTNAGG 1 cut(s) 792
BaeGI GKGCMC 1 cut(s) 638
BamHI GGATCC 2 cut(s) 874, 934
BanI GGYRCC 2 cut(s) 163, 609
BanII GRGCYC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 894
BbvI GCAGC 1 cut(s) 50
BccI CCATC 3 cut(s) 226, 309, 536
BceAI ACGGC 1 cut(s) 676
BciT130I CCWGG 2 cut(s) 932, 939
BciVI GTATCC 3 cut(s) 339, 377, 833
BclI TGATCA 3 cut(s) 3, 462, 582
BcnI CCSGG 2 cut(s) 729, 821
BfaI CTAG 3 cut(s) 480, 567, 1053
BfmI CTRYAG 1 cut(s) 972
BfuI GTATCC 3 cut(s) 339, 377, 833
BglII AGATCT 1 cut(s) 807
BisI GCNGC 3 cut(s) 19, 39, 705
BlnI CCTAGG 1 cut(s) 1052
BlsI GCNGC 3 cut(s) 20, 40, 706
Bme1390I CCNGG 4 cut(s) 729, 821, 932, 939
Bme18I GGWCC 2 cut(s) 71, 476
BmeT110I CYCGRG 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 71, 476
BmiI GGNNCC 6 cut(s) 73, 165, 477, 611, 876, 936
BmrFI CCNGG 4 cut(s) 729, 821, 932, 939
BmsI GCATC 3 cut(s) 107, 202, 330
BpuEI CTTGAG 1 cut(s) 331
BpuMI CCSGG 2 cut(s) 729, 821
BsaBI GATNNNNATC 1 cut(s) 1005
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 332, 367, 728, 1052
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 107, 542, 826, 827
Bse21I CCTNAGG 1 cut(s) 792
Bse3DI GCAATG 2 cut(s) 685, 968
Bse8I GATNNNNATC 1 cut(s) 1005
BseBI CCWGG 2 cut(s) 932, 939
BseDI CCNNGG 4 cut(s) 332, 367, 728, 1052
BseGI GGATG 5 cut(s) 122, 217, 237, 411, 972
BseJI GATNNNNATC 1 cut(s) 1005
BseLI CCNNNNNNNGG 5 cut(s) 56, 107, 542, 826, 827
BseMI GCAATG 2 cut(s) 685, 968
BseMII CTCAG 2 cut(s) 806, 1008
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 1 cut(s) 50
BshNI GGYRCC 2 cut(s) 163, 609
BsiHKAI GWGCWC 1 cut(s) 894
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 2 cut(s) 728, 821
BslFI GGGAC 2 cut(s) 997, 1034
BslI CCNNNNNNNGG 5 cut(s) 56, 107, 542, 826, 827
BsmFI GGGAC 2 cut(s) 997, 1034
BsmI GAATGC 1 cut(s) 739
BsoBI CYCGRG 1 cut(s) 746
Bsp1286I GDGCHC 2 cut(s) 638, 894
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 8 cut(s) 18, 93, 638, 687, 691, 705, 737, 947
BspCNI CTCAG 2 cut(s) 805, 1009
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 6 cut(s) 73, 165, 477, 611, 876, 936
BspPI GGATC 6 cut(s) 764, 869, 882, 929, 942, 995
BspT107I GGYRCC 2 cut(s) 163, 609
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 2 cut(s) 685, 968
BssECI CCNNGG 4 cut(s) 332, 367, 728, 1052
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 3 cut(s) 332, 367, 1052
Bst2UI CCWGG 2 cut(s) 932, 939
Bst4CI ACNGT 2 cut(s) 527, 1027
BstACI GRCGYC 1 cut(s) 360
BstAPI GCANNNNNTGC 1 cut(s) 811
BstC8I GCNNGC 4 cut(s) 638, 691, 725, 951
BstDEI CTNAG 2 cut(s) 792, 1017
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 5 cut(s) 122, 217, 237, 411, 972
BstMWI GCNNNNNNNGC 1 cut(s) 811
BstNI CCWGG 2 cut(s) 932, 939
BstSCI CCNGG 4 cut(s) 727, 819, 930, 937
BstSFI CTRYAG 1 cut(s) 972
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 4 cut(s) 807, 874, 934, 1000
BstXI CCANNNNNNTGG 1 cut(s) 885
BstYI RGATCY 4 cut(s) 807, 874, 934, 1000
Bsu36I CCTNAGG 1 cut(s) 792
BsuI GTATCC 3 cut(s) 339, 377, 833
BtgI CCRYGG 1 cut(s) 367
BtgZI GCGATG 2 cut(s) 561, 659
BtsCI GGATG 5 cut(s) 122, 217, 237, 411, 972
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 4 cut(s) 638, 691, 725, 951
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 71, 476
CseI GACGC 1 cut(s) 368
Csp6I GTAC 2 cut(s) 718, 835
CviJI RGCY 8 cut(s) 41, 130, 337, 513, 535, 751, 892, 953
CviKI_1 RGCY 8 cut(s) 41, 130, 337, 513, 535, 751, 892, 953
CviQI GTAC 2 cut(s) 718, 835
DdeI CTNAG 2 cut(s) 792, 1017
DraI TTTAAA 3 cut(s) 79, 439, 456
DrdI GACNNNNNNGTC 1 cut(s) 1046
DseDI GACNNNNNNGTC 1 cut(s) 1046
EciI GGCGGA 1 cut(s) 936
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 3 cut(s) 332, 367, 1052
Eco24I GRGCYC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 71, 476
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 3 cut(s) 303, 334, 540
Eco81I CCTNAGG 1 cut(s) 792
Eco88I CYCGRG 1 cut(s) 746
EcoICRI GAGCTC 1 cut(s) 892
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 2 cut(s) 930, 937
EcoT14I CCWWGG 3 cut(s) 332, 367, 1052
EcoT22I ATGCAT 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 3 cut(s) 332, 367, 1052
FaqI GGGAC 2 cut(s) 997, 1034
FauI CCCGC 2 cut(s) 645, 698
FbaI TGATCA 3 cut(s) 3, 462, 582
Fnu4HI GCNGC 3 cut(s) 19, 39, 705
FokI GGATG 5 cut(s) 129, 224, 244, 418, 979
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 3 cut(s) 19, 39, 705
FspBI CTAG 3 cut(s) 480, 567, 1053
GluI GCNGC 3 cut(s) 19, 39, 705
HapII CCGG 2 cut(s) 728, 821
HgaI GACGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 360
HinfI GANTC 3 cut(s) 175, 425, 670
HpaII CCGG 2 cut(s) 728, 821
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 1 cut(s) 1023
Hpy188I TCNGA 4 cut(s) 110, 353, 358, 559
Hpy188III TCNNGA 7 cut(s) 13, 143, 310, 422, 746, 794, 1004
Hpy8I GTNNAC 1 cut(s) 1023
HpyAV CCTTC 4 cut(s) 80, 141, 154, 180
HpyCH4III ACNGT 2 cut(s) 527, 1027
HpyCH4V TGCA 4 cut(s) 38, 120, 215, 805
HpyF10VI GCNNNNNNNGC 1 cut(s) 811
HpyF3I CTNAG 2 cut(s) 792, 1017
Hsp92I GRCGYC 1 cut(s) 360
Ksp22I TGATCA 3 cut(s) 3, 462, 582
LmnI GCTCC 2 cut(s) 510, 889
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 3 cut(s) 107, 202, 330
MaeI CTAG 3 cut(s) 480, 567, 1053
MaeIII GTNAC 5 cut(s) 59, 259, 550, 562, 909
MbiI CCGCTC 1 cut(s) 18
MboII GAAGA 1 cut(s) 532
MflI RGATCY 4 cut(s) 807, 874, 934, 1000
MhlI GDGCHC 2 cut(s) 638, 894
MluCI AATT 6 cut(s) 154, 169, 414, 433, 488, 990
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 4 cut(s) 49, 217, 497, 845
Mph1103I ATGCAT 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 244
MseI TTAA 3 cut(s) 78, 438, 455
MslI CAYNNNNRTG 1 cut(s) 678
MspI CCGG 2 cut(s) 728, 821
MspR9I CCNGG 4 cut(s) 729, 821, 932, 939
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 2 cut(s) 932, 939
MwoI GCNNNNNNNGC 1 cut(s) 811
NciI CCSGG 2 cut(s) 729, 821
NcoI CCATGG 1 cut(s) 367
NlaIV GGNNCC 6 cut(s) 73, 165, 477, 611, 876, 936
NmuCI GTSAC 4 cut(s) 59, 259, 550, 909
NsiI ATGCAT 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 746
PagI TCATGA 1 cut(s) 142
PctI GAATGC 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 425, 670
PfoI TCCNGGA 1 cut(s) 937
PkrI GCNGC 3 cut(s) 20, 40, 706
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 894
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 930, 937
PspGI CCWGG 2 cut(s) 930, 937
PspN4I GGNNCC 6 cut(s) 73, 165, 477, 611, 876, 936
PspPI GGNCC 2 cut(s) 71, 476
PspPPI RGGWCCY 1 cut(s) 476
PsuI RGATCY 4 cut(s) 807, 874, 934, 1000
RsaI GTAC 2 cut(s) 719, 836
RsaNI GTAC 2 cut(s) 718, 835
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 3 cut(s) 78, 438, 455
SatI GCNGC 3 cut(s) 19, 39, 705
Sau96I GGNCC 2 cut(s) 71, 476
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 4 cut(s) 729, 821, 932, 939
SduI GDGCHC 2 cut(s) 638, 894
SfaNI GCATC 3 cut(s) 107, 202, 330
SfcI CTRYAG 1 cut(s) 972
Sfr274I CTCGAG 1 cut(s) 746
SinI GGWCC 2 cut(s) 71, 476
SlaI CTCGAG 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 3 cut(s) 11, 310, 746
SmoI CTYRAG 3 cut(s) 11, 310, 746
Sse9I AATT 6 cut(s) 154, 169, 414, 433, 488, 990
SsiI CCGC 8 cut(s) 18, 93, 638, 687, 691, 705, 737, 947
SspMI CTAG 3 cut(s) 480, 567, 1053
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 4 cut(s) 727, 819, 930, 937
StyI CCWWGG 3 cut(s) 332, 367, 1052
TaaI ACNGT 2 cut(s) 527, 1027
TaqI TCGA 2 cut(s) 747, 894
TasI AATT 6 cut(s) 154, 169, 414, 433, 488, 990
TatI WGTACW 1 cut(s) 717
TauI GCSGC 2 cut(s) 21, 707
TfiI GAWTC 2 cut(s) 425, 670
Tru1I TTAA 3 cut(s) 78, 438, 455
Tru9I TTAA 3 cut(s) 78, 438, 455
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 4 cut(s) 59, 259, 550, 909
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 4 cut(s) 59, 259, 550, 909
TspDTI ATGAA 5 cut(s) 137, 439, 594, 662, 911
TspGWI ACGGA 3 cut(s) 682, 762, 852
TspRI CASTG 1 cut(s) 532
VpaK11BI GGWCC 2 cut(s) 71, 476
XapI RAATTY 2 cut(s) 433, 990
XcmI CCANNNNNNNNNTGG 2 cut(s) 374, 822
XhoI CTCGAG 1 cut(s) 746
XmaJI CCTAGG 1 cut(s) 1052
XmnI GAANNNNTTC 1 cut(s) 244
XspI CTAG 3 cut(s) 480, 567, 1053
Zsp2I ATGCAT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.