pycom06g03560

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016856
Physical Location & Seq
Reverse (-)
4472311 .. 4472979
669 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGGGCACGAGACAAATCCAGGTTGCAGACCAAACCCTAGTTATCCACGAGCTAGACGACGTCAGTGACTCAACAACGGGTCGAGCTCTCACCGGCTCATGGGTTTGGGACTCGGCCCTTGTCCTATCCAACTGGATGGCCACCCAAGGCACAGTCCACTTTCACTTCCAAGATAAGTCCGTCCTCGAGCTCGGTGCTGGGGCAGGACTTCCCGGCCTGACAGCGGCTCGGCTTGGAGCGAACCGAGTCCTTCTCACGGATATGGGGCCACTACTTCCGGGGCTGTTGAGGAATGTGGAGGCCAACGGACTCGGGGACCGAGTCCAGGTGAGGGAACTCGTGTGGGGATCGGACGAGTCACCGAGTCAAATCAGCGAGTTGGACCTAATTTTGATGTCTGACGTGTTCTATAACCAAGAGGAAATGGTGGGGTTGGCCAAGACGTTGAAGAGCGTGTGCGGCAGAGGTACTACGGTTTGGGCGTCAACGGAGGTCAGGCCATGGACCGCCGAGTGCTTAAGCGAGTTGGTACATGAAGGTTTTGGACTCGTCGAGTTTCCGAGTCAAATGGTGGAGGAAATGGAGGGCTTGGATTGTTTTGCCATTTTCCAAGTCATACCACCACATGAAGATAACCAAAGAACTTTCGTTGTCGAGGGCTCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

223

Amino Acids

24.26

Weight (kDa)

4.43

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 31 - 166 1e-28 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016856)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20871
malus_domestica MD06G1042700.v1.1
pyrus_communis pycom06g03560
rosa_chinensis RchiOBHm_Chr7g0207961
rosa_laevigata RLG00000003269
rosa_multiflora Rmu_sc0000905.1_g000011
rosa_roxburghii Rroxscaffold_3G00250980
rosa_rugosa Rorug07G0100500
rosa_samantha Rh7AG235800 Rh7BG229700 Rh7CG249300 Rh7DG240200
rosa_wichuraiana Rw0G001250 Rw0G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AciI CCGC 3 cut(s) 224, 459, 507
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 2 cut(s) 138, 435
AcyI GRCGYC 2 cut(s) 60, 482
AfaI GTAC 2 cut(s) 469, 531
AfiI CCNNNNNNNGG 5 cut(s) 99, 223, 256, 325, 331
AflII CTTAAG 1 cut(s) 517
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 1 cut(s) 448
AjiI CACGTC 1 cut(s) 403
AjnI CCWGG 2 cut(s) 18, 324
AluBI AGCT 3 cut(s) 52, 86, 190
AluI AGCT 3 cut(s) 52, 86, 190
Alw21I GWGCWC 2 cut(s) 88, 192
Alw26I GTCTC 1 cut(s) 4
AlwI GGATC 1 cut(s) 355
Ama87I CYCGRG 2 cut(s) 185, 311
AoxI GGCC 7 cut(s) 114, 138, 214, 266, 300, 435, 497
AspS9I GGNCC 5 cut(s) 115, 266, 316, 382, 504
AsuC2I CCSGG 2 cut(s) 213, 279
AsuHPI GGTGA 3 cut(s) 82, 340, 351
AvaI CYCGRG 2 cut(s) 185, 311
AvaII GGWCC 3 cut(s) 316, 382, 504
BaeGI GKGCMC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BalI TGGCCA 2 cut(s) 140, 437
BanII GRGCYC 3 cut(s) 88, 192, 662
BauI CACGAG 3 cut(s) 7, 47, 338
Bbv12I GWGCWC 2 cut(s) 88, 192
BccI CCATC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 2 cut(s) 20, 326
BcnI CCSGG 2 cut(s) 213, 279
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 2 cut(s) 38, 53
BfrI CTTAAG 1 cut(s) 517
BisI GCNGC 2 cut(s) 225, 460
BlsI GCNGC 2 cut(s) 226, 461
Bme1390I CCNGG 4 cut(s) 20, 213, 279, 326
Bme18I GGWCC 3 cut(s) 316, 382, 504
BmeT110I CYCGRG 2 cut(s) 185, 311
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 5 cut(s) 115, 266, 316, 382, 504
BmiI GGNNCC 2 cut(s) 267, 317
BmrFI CCNGG 4 cut(s) 20, 213, 279, 326
BplI GAGNNNNNCTC 2 cut(s) 237, 269
BpuMI CCSGG 2 cut(s) 213, 279
BsaHI GRCGYC 2 cut(s) 60, 482
BsaJI CCNNGG 3 cut(s) 145, 278, 500
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 223, 256, 325, 331
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 2 cut(s) 20, 326
BseDI CCNNGG 3 cut(s) 145, 278, 500
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 5 cut(s) 99, 223, 256, 325, 331
BseNI ACTGG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 197
BshFI GGCC 7 cut(s) 116, 140, 216, 268, 302, 437, 499
BsiHKAI GWGCWC 2 cut(s) 88, 192
BsiHKCI CYCGRG 2 cut(s) 185, 311
BsiSI CCGG 3 cut(s) 93, 213, 278
BslFI GGGAC 2 cut(s) 122, 329
BslI CCNNNNNNNGG 5 cut(s) 99, 223, 256, 325, 331
BsmAI GTCTC 1 cut(s) 4
BsmFI GGGAC 2 cut(s) 122, 329
BsnI GGCC 7 cut(s) 116, 140, 216, 268, 302, 437, 499
BsoBI CYCGRG 2 cut(s) 185, 311
Bsp1286I GDGCHC 4 cut(s) 8, 88, 192, 662
Bsp143I GATC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 500
BspACI CCGC 3 cut(s) 224, 459, 507
BspANI GGCC 7 cut(s) 116, 140, 216, 268, 302, 437, 499
BspLI GGNNCC 2 cut(s) 267, 317
BspPI GGATC 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 517
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 145, 278, 500
BssMI GATC 1 cut(s) 347
BssNI GRCGYC 2 cut(s) 60, 482
BssSI CACGAG 3 cut(s) 7, 47, 338
BssT1I CCWWGG 2 cut(s) 145, 500
Bst2BI CACGAG 3 cut(s) 7, 47, 338
Bst2UI CCWGG 2 cut(s) 20, 326
Bst4CI ACNGT 2 cut(s) 154, 475
Bst6I CTCTTC 1 cut(s) 443
BstACI GRCGYC 2 cut(s) 60, 482
BstAFI CTTAAG 1 cut(s) 517
BstDSI CCRYGG 1 cut(s) 500
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 1 cut(s) 350
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 1 cut(s) 347
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 2 cut(s) 20, 326
BstSCI CCNGG 4 cut(s) 18, 211, 277, 324
BstSLI GKGCMC 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuRI GGCC 7 cut(s) 116, 140, 216, 268, 302, 437, 499
BtgI CCRYGG 1 cut(s) 500
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 5 cut(s) 115, 266, 316, 382, 504
CseI GACGC 1 cut(s) 471
Csp6I GTAC 2 cut(s) 468, 530
CviAII CATG 4 cut(s) 99, 501, 533, 626
CviQI GTAC 2 cut(s) 468, 530
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
EaeI YGGCCR 2 cut(s) 138, 435
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Ecl136II GAGCTC 2 cut(s) 86, 190
Eco130I CCWWGG 2 cut(s) 145, 500
Eco24I GRGCYC 3 cut(s) 88, 192, 662
Eco47I GGWCC 3 cut(s) 316, 382, 504
Eco53kI GAGCTC 2 cut(s) 86, 190
Eco88I CYCGRG 2 cut(s) 185, 311
EcoICRI GAGCTC 2 cut(s) 86, 190
EcoRII CCWGG 2 cut(s) 18, 324
EcoT14I CCWWGG 2 cut(s) 145, 500
EcoT38I GRGCYC 3 cut(s) 88, 192, 662
ErhI CCWWGG 2 cut(s) 145, 500
FaeI CATG 4 cut(s) 102, 504, 536, 629
FaiI YATR 7 cut(s) 100, 263, 411, 502, 534, 617, 627
FaqI GGGAC 2 cut(s) 122, 329
FatI CATG 4 cut(s) 98, 500, 532, 625
Fnu4HI GCNGC 2 cut(s) 225, 460
FokI GGATG 1 cut(s) 148
FriOI GRGCYC 3 cut(s) 88, 192, 662
Fsp4HI GCNGC 2 cut(s) 225, 460
FspBI CTAG 2 cut(s) 38, 53
GluI GCNGC 2 cut(s) 225, 460
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 7 cut(s) 116, 140, 216, 268, 302, 437, 499
HapII CCGG 3 cut(s) 93, 213, 278
HgaI GACGC 1 cut(s) 471
Hin1I GRCGYC 2 cut(s) 60, 482
Hin1II CATG 4 cut(s) 102, 504, 536, 629
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HinfI GANTC 9 cut(s) 68, 110, 246, 309, 321, 356, 364, 546, 562
HpaII CCGG 3 cut(s) 93, 213, 278
HphI GGTGA 3 cut(s) 82, 340, 351
Hpy166II GTNNAC 2 cut(s) 157, 486
Hpy188I TCNGA 4 cut(s) 352, 400, 561, 668
Hpy8I GTNNAC 2 cut(s) 157, 486
Hpy99I CGWCG 2 cut(s) 62, 554
HpyAV CCTTC 2 cut(s) 260, 530
HpyCH4III ACNGT 2 cut(s) 154, 475
HpyCH4IV ACGT 3 cut(s) 60, 402, 443
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpySE526I ACGT 3 cut(s) 60, 402, 443
Hsp92I GRCGYC 2 cut(s) 60, 482
Hsp92II CATG 4 cut(s) 102, 504, 536, 629
Kzo9I GATC 1 cut(s) 347
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 1 cut(s) 236
MaeI CTAG 2 cut(s) 38, 53
MaeII ACGT 3 cut(s) 60, 402, 443
MaeIII GTNAC 2 cut(s) 65, 357
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 2 cut(s) 460, 641
MhlI GDGCHC 4 cut(s) 8, 88, 192, 662
MlsI TGGCCA 2 cut(s) 140, 437
MluCI AATT 1 cut(s) 387
MluNI TGGCCA 2 cut(s) 140, 437
MlyI GAGTC 9 cut(s) 62, 104, 255, 303, 330, 365, 373, 540, 571
MmeI TCCRAC 2 cut(s) 153, 360
Mox20I TGGCCA 2 cut(s) 140, 437
MscI TGGCCA 2 cut(s) 140, 437
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 2 cut(s) 140, 437
MspA1I CMGCKG 1 cut(s) 224
MspCI CTTAAG 1 cut(s) 517
MspI CCGG 3 cut(s) 93, 213, 278
MspR9I CCNGG 4 cut(s) 20, 213, 279, 326
MvaI CCWGG 2 cut(s) 20, 326
MwoI GCNNNNNNNGC 1 cut(s) 459
NciI CCSGG 2 cut(s) 213, 279
NcoI CCATGG 1 cut(s) 500
NdeII GATC 1 cut(s) 347
NlaIII CATG 4 cut(s) 102, 504, 536, 629
NlaIV GGNNCC 2 cut(s) 267, 317
NmeAIII GCCGAG 3 cut(s) 92, 208, 535
NmuCI GTSAC 2 cut(s) 65, 357
PaeR7I CTCGAG 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 479
PflFI GACNNNGTC 2 cut(s) 59, 320
PkrI GCNGC 2 cut(s) 226, 461
PleI GAGTC 9 cut(s) 62, 104, 254, 303, 329, 364, 372, 540, 570
PpsI GAGTC 9 cut(s) 62, 104, 254, 303, 329, 364, 372, 540, 570
Psp124BI GAGCTC 2 cut(s) 88, 192
Psp6I CCWGG 2 cut(s) 18, 324
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 2 cut(s) 18, 324
PspN4I GGNNCC 2 cut(s) 267, 317
PspPI GGNCC 5 cut(s) 115, 266, 316, 382, 504
PspXI VCTCGAGB 1 cut(s) 185
PsyI GACNNNGTC 2 cut(s) 59, 320
RsaI GTAC 2 cut(s) 469, 531
RsaNI GTAC 2 cut(s) 468, 530
RseI CAYNNNNRTG 1 cut(s) 260
SacI GAGCTC 2 cut(s) 88, 192
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 2 cut(s) 225, 460
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 5 cut(s) 115, 266, 316, 382, 504
SchI GAGTC 9 cut(s) 62, 104, 255, 303, 330, 365, 373, 540, 571
ScrFI CCNGG 4 cut(s) 20, 213, 279, 326
SduI GDGCHC 4 cut(s) 8, 88, 192, 662
Sfr274I CTCGAG 1 cut(s) 185
SinI GGWCC 3 cut(s) 316, 382, 504
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 185, 517
SmoI CTYRAG 2 cut(s) 185, 517
Sse9I AATT 1 cut(s) 387
SsiI CCGC 3 cut(s) 224, 459, 507
SspMI CTAG 2 cut(s) 38, 53
SstI GAGCTC 2 cut(s) 88, 192
StyD4I CCNGG 4 cut(s) 18, 211, 277, 324
StyI CCWWGG 2 cut(s) 145, 500
TaaI ACNGT 2 cut(s) 154, 475
TaiI ACGT 3 cut(s) 63, 405, 446
TaqI TCGA 4 cut(s) 82, 186, 552, 654
TaqII GACCGA 1 cut(s) 333
TasI AATT 1 cut(s) 387
TauI GCSGC 2 cut(s) 227, 462
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 65, 357
Tsp45I GTSAC 2 cut(s) 65, 357
TspDTI ATGAA 2 cut(s) 549, 642
TspGWI ACGGA 4 cut(s) 169, 272, 321, 503
TspRI CASTG 1 cut(s) 70
Tth111I GACNNNGTC 2 cut(s) 59, 320
Vha464I CTTAAG 1 cut(s) 517
VpaK11BI GGWCC 3 cut(s) 316, 382, 504
XhoI CTCGAG 1 cut(s) 185
XspI CTAG 2 cut(s) 38, 53
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.