Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007771

Physical Location & Seq

Genomic Coordinates Reverse (-)

6057504 .. 6062551

Gene Structure 5048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGATGGAGTTGGTCGTCGTCTTCATCGTGGCTTTGATATCCATCCCAACTTCACTTTCCGTACCCTTCATAGTCCTCCACGGCATTGGAGATCAGTGCTCTAATAAAGGAGTTAAACAGTTTACCAAGCAACTGAGCAACTTTTCTGGTAGTGAAGGATATTGCATAGAAGTTGGGGATGGAACGTGGGATTCCTGGTTTTTACCTCTTGACGAACAGACCAGAATCGTTTGTGATAAGGTTAAAGAAAAGGAAGAACTGAGACAAGGTTACAACATTGTTGGTCTCTCCCAGGGCAATTTGATAGGCCGAGGTGTGGTAGAATTTTGCGTCGATGGACCGCCTGTCAAGAACTTTATCTCTTTAGGAGGACCTCATGCGGGTACTGCTTCTGTGCCTCTCTGCGGTTCTGGTATATTTTGCATCATTGTGAATAAGCTACTCAAATCAGAGATCTACACTGACTATATTCAAGAACACTTGGCTCCCAGCGGTTATCTTAAATTACCAAATGCAATGTCTGATTATTTAGGGAAATGCAAGTTTCTTCCGAAGCTCAACAACGAACTCCCTGGTGAGAAAAACTCGACTTACAAGGAAAGGTTTAGTAGCTTACAGAACCTGGTGCTTATCATGTTTGAGCATGACACTGTTTTGATACCGAAGGAGACCGCGTGGTTTGGATATTACGAAGATGATAGCTTCAAATCAATTTTAAGTCCACAACAGACCGATCTGTTTACTGAGGACTGGATCGGTTTGAGAACCTTGGATGAAGCTGGGAGGGTCAAGTACATTAGCGTTGCAGGAGGTCATCTCGGAATCTCCACCAGCGACATGAAGAAGCACGTGGTGCCCTACTTGCAAGATTCAGCGTCGACGATGGATGGAAACAAGAAAGCTAGTTATACCAGGGCAAGTGGATTTGATGAGAGAGCATCAACTGAAGATGTACCGGAAGGGTCGTTGTCGTACAGGTGGCCCTTACCAGTCAAGAATTTGTTCAGTGAACTTCTTGGACTCACAGAGGACAAGTCACTCCCTCGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

351

Amino Acids

38.77

Weight (kDa)

5.29

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	22 - 272	8.8e-77	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17480 AT4G17480 AT4G17480 AT4G17480
fragaria_vesca	FvH4_5g19650 FvH4_5g19650 FvH4_5g19650 FvH4_5g19650
malus_domestica	MD04G1061600.v1.1
prunus_persica	Prupe.5G063800_v2.0.a1 Prupe.5G063800_v2.0.a1
pyrus_communis	pycom04g05530 pycom06g04640
rosa_chinensis	RchiOBHm_Chr7g0204381
rosa_laevigata	RLG00000003468
rosa_multiflora	Rmu_sc0002918.1_g000006
rosa_roxburghii	Rroxscaffold_3G00253180
rosa_rugosa	Rorug07G0082700 Rorug07G0082800
rosa_samantha	Rh7AG213000 Rh7BG211100 Rh7CG226100 Rh7DG220300
rosa_wichuraiana	Rw7G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	853
AccI	GTMKAC	1 cut(s)	878
AccII	CGCG	1 cut(s)	674
AciI	CCGC	5 cut(s)	341, 380, 405, 492, 672
AclWI	GGATC	1 cut(s)	761
AcsI	RAATTY	2 cut(s)	323, 997
AcuI	CTGAAG	1 cut(s)	966
AcvI	CACGTG	1 cut(s)	850
AdeI	CACNNNGTG	1 cut(s)	853
AfaI	GTAC	5 cut(s)	63, 385, 794, 954, 974
AfiI	CCNNNNNNNGG	3 cut(s)	316, 380, 404
AgsI	TTSAA	2 cut(s)	473, 706
AhdI	GACNNNNNGTC	1 cut(s)	344
AjnI	CCWGG	5 cut(s)	194, 291, 571, 621, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	6 cut(s)	439, 556, 612, 702, 779, 902
AluI	AGCT	6 cut(s)	439, 556, 612, 702, 779, 902
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	3 cut(s)	256, 290, 662
AlwI	GGATC	1 cut(s)	761
AlwNI	CAGNNNCTG	1 cut(s)	622
AoxI	GGCC	3 cut(s)	307, 980, 1046
ApoI	RAATTY	2 cut(s)	323, 997
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
Asp700I	GAANNNNTTC	1 cut(s)	1001
AspS9I	GGNCC	3 cut(s)	338, 371, 981
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	338, 371
BaeGI	GKGCMC	1 cut(s)	858
BanI	GGYRCC	1 cut(s)	853
BbrPI	CACGTG	1 cut(s)	850
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	101
BccI	CCATC	5 cut(s)	50, 173, 329, 877, 881
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	5 cut(s)	196, 293, 573, 623, 913
BcoDI	GTCTC	3 cut(s)	256, 290, 662
BfaI	CTAG	1 cut(s)	903
BglII	AGATCT	1 cut(s)	453
Bme1390I	CCNGG	5 cut(s)	196, 293, 573, 623, 913
Bme18I	GGWCC	2 cut(s)	338, 371
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	338, 371, 981
BmiI	GGNNCC	2 cut(s)	486, 855
BmrFI	CCNGG	5 cut(s)	196, 293, 573, 623, 913
BmsI	GCATC	2 cut(s)	432, 947
BpiI	GAAGAC	1 cut(s)	13
BplI	GAGNNNNNCTC	4 cut(s)	569, 601, 801, 833
BsaAI	YACGTR	1 cut(s)	850
BsaBI	GATNNNNATC	1 cut(s)	41
BsaI	GGTCTC	2 cut(s)	290, 662
BsaJI	CCNNGG	8 cut(s)	79, 291, 292, 310, 571, 768, 912, 1043
BsaWI	WCCGGW	1 cut(s)	955
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 380, 404
Bse1I	ACTGG	2 cut(s)	755, 989
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	5 cut(s)	196, 293, 573, 623, 913
BseDI	CCNNGG	8 cut(s)	79, 291, 292, 310, 571, 768, 912, 1043
BseGI	GGATG	4 cut(s)	42, 184, 778, 892
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	3 cut(s)	316, 380, 404
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	3 cut(s)	125, 251, 735
BseNI	ACTGG	2 cut(s)	755, 989
BseSI	GKGCMC	1 cut(s)	858
BseYI	CCCAGC	2 cut(s)	488, 779
Bsh1236I	CGCG	1 cut(s)	674
BshFI	GGCC	3 cut(s)	309, 982, 1048
BshNI	GGYRCC	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	956
BslI	CCNNNNNNNGG	3 cut(s)	316, 380, 404
BsmAI	GTCTC	3 cut(s)	256, 290, 662
BsnI	GGCC	3 cut(s)	309, 982, 1048
Bso31I	GGTCTC	2 cut(s)	290, 662
Bsp1286I	GDGCHC	2 cut(s)	101, 858
Bsp143I	GATC	4 cut(s)	91, 453, 733, 753
BspACI	CCGC	5 cut(s)	341, 380, 405, 492, 672
BspANI	GGCC	3 cut(s)	309, 982, 1048
BspCNI	CTCAG	3 cut(s)	126, 252, 736
BspFNI	CGCG	1 cut(s)	674
BspLI	GGNNCC	2 cut(s)	486, 855
BspPI	GGATC	1 cut(s)	761
BspT107I	GGYRCC	1 cut(s)	853
BspTNI	GGTCTC	2 cut(s)	290, 662
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	755, 989
BssECI	CCNNGG	8 cut(s)	79, 291, 292, 310, 571, 768, 912, 1043
BssMI	GATC	4 cut(s)	91, 453, 733, 753
BssT1I	CCWWGG	1 cut(s)	768
Bst2UI	CCWGG	5 cut(s)	196, 293, 573, 623, 913
Bst4CI	ACNGT	2 cut(s)	120, 652
BstAPI	GCANNNNNTGC	1 cut(s)	853
BstBAI	YACGTR	1 cut(s)	850
BstDEI	CTNAG	3 cut(s)	134, 260, 744
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	4 cut(s)	42, 184, 778, 892
BstFNI	CGCG	1 cut(s)	674
BstKTI	GATC	4 cut(s)	94, 456, 736, 756
BstMAI	GTCTC	3 cut(s)	256, 290, 662
BstMBI	GATC	4 cut(s)	91, 453, 733, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 853, 862
BstNI	CCWGG	5 cut(s)	196, 293, 573, 623, 913
BstSCI	CCNGG	5 cut(s)	194, 291, 571, 621, 911
BstSLI	GKGCMC	1 cut(s)	858
BstUI	CGCG	1 cut(s)	674
BstV2I	GAAGAC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	309, 982, 1048
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	42, 184, 778, 892
BtsIMutI	CAGTG	4 cut(s)	101, 459, 648, 1012
CaiI	CAGNNNCTG	1 cut(s)	622
Cfr13I	GGNCC	3 cut(s)	338, 371, 981
CseI	GACGC	2 cut(s)	319, 864
CsiI	ACCWGGT	1 cut(s)	621
Csp6I	GTAC	5 cut(s)	62, 384, 793, 953, 973
CviAII	CATG	4 cut(s)	377, 634, 644, 838
CviQI	GTAC	5 cut(s)	62, 384, 793, 953, 973
DdeI	CTNAG	3 cut(s)	134, 260, 744
DpnI	GATC	4 cut(s)	93, 455, 735, 755
DpnII	GATC	4 cut(s)	91, 453, 733, 753
DraIII	CACNNNGTG	1 cut(s)	853
DriI	GACNNNNNGTC	1 cut(s)	344
Eam1105I	GACNNNNNGTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	768
Eco31I	GGTCTC	2 cut(s)	290, 662
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	338, 371
Eco57I	CTGAAG	1 cut(s)	966
Eco72I	CACGTG	1 cut(s)	850
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	5 cut(s)	194, 291, 571, 621, 911
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	4 cut(s)	380, 637, 647, 841
FaiI	YATR	9 cut(s)	71, 167, 378, 416, 468, 635, 645, 839, 909
FatI	CATG	4 cut(s)	376, 633, 643, 837
FauI	CCCGC	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	878
FokI	GGATG	4 cut(s)	29, 191, 785, 899
FspBI	CTAG	1 cut(s)	903
GsaI	CCCAGC	2 cut(s)	492, 783
HaeIII	GGCC	3 cut(s)	309, 982, 1048
HapII	CCGG	1 cut(s)	956
HgaI	GACGC	2 cut(s)	319, 864
Hin1II	CATG	4 cut(s)	380, 637, 647, 841
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HinfI	GANTC	5 cut(s)	191, 225, 822, 869, 1020
HpaII	CCGG	1 cut(s)	956
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	5 cut(s)	123, 722, 741, 879, 1010
Hpy188I	TCNGA	4 cut(s)	451, 523, 552, 821
Hpy188III	TCNNGA	4 cut(s)	209, 349, 473, 994
Hpy8I	GTNNAC	5 cut(s)	123, 722, 741, 879, 1010
Hpy99I	CGWCG	4 cut(s)	20, 335, 880, 883
HpyAV	CCTTC	4 cut(s)	76, 149, 658, 953
HpyCH4III	ACNGT	2 cut(s)	120, 652
HpyCH4IV	ACGT	2 cut(s)	185, 849
HpyCH4V	TGCA	6 cut(s)	165, 423, 515, 540, 806, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 853, 862
HpyF3I	CTNAG	3 cut(s)	134, 260, 744
HpySE526I	ACGT	2 cut(s)	185, 849
Hsp92II	CATG	4 cut(s)	380, 637, 647, 841
Kzo9I	GATC	4 cut(s)	91, 453, 733, 753
LmnI	GCTCC	1 cut(s)	490
LweI	GCATC	2 cut(s)	432, 947
MabI	ACCWGGT	1 cut(s)	621
MaeI	CTAG	1 cut(s)	903
MaeII	ACGT	2 cut(s)	185, 849
MaeIII	GTNAC	2 cut(s)	269, 1035
MalI	GATC	4 cut(s)	93, 455, 735, 755
MboI	GATC	4 cut(s)	91, 453, 733, 753
MboII	GAAGA	6 cut(s)	13, 266, 539, 704, 853, 959
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	101, 858
MluCI	AATT	5 cut(s)	298, 323, 503, 711, 997
MlyI	GAGTC	1 cut(s)	1014
MroXI	GAANNNNTTC	1 cut(s)	1001
MseI	TTAA	4 cut(s)	114, 243, 501, 716
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	1 cut(s)	956
MspR9I	CCNGG	5 cut(s)	196, 293, 573, 623, 913
MvaI	CCWGG	5 cut(s)	196, 293, 573, 623, 913
MvnI	CGCG	1 cut(s)	674
MwoI	GCNNNNNNNGC	3 cut(s)	386, 853, 862
NdeII	GATC	4 cut(s)	91, 453, 733, 753
NlaIII	CATG	4 cut(s)	380, 637, 647, 841
NlaIV	GGNNCC	2 cut(s)	486, 855
NmeAIII	GCCGAG	2 cut(s)	335, 1024
NmuCI	GTSAC	1 cut(s)	1035
PasI	CCCWGGG	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	1001
PfeI	GAWTC	4 cut(s)	191, 225, 822, 869
PleI	GAGTC	1 cut(s)	1014
PmaCI	CACGTG	1 cut(s)	850
PmlI	CACGTG	1 cut(s)	850
PpsI	GAGTC	1 cut(s)	1014
Ppu21I	YACGTR	1 cut(s)	850
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	5 cut(s)	194, 291, 571, 621, 911
PspCI	CACGTG	1 cut(s)	850
PspFI	CCCAGC	2 cut(s)	488, 779
PspGI	CCWGG	5 cut(s)	194, 291, 571, 621, 911
PspN4I	GGNNCC	2 cut(s)	486, 855
PspPI	GGNCC	3 cut(s)	338, 371, 981
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	5 cut(s)	63, 385, 794, 954, 974
RsaNI	GTAC	5 cut(s)	62, 384, 793, 953, 973
RseI	CAYNNNNRTG	1 cut(s)	428
SalI	GTCGAC	1 cut(s)	877
SaqAI	TTAA	4 cut(s)	114, 243, 501, 716
Sau3AI	GATC	4 cut(s)	91, 453, 733, 753
Sau96I	GGNCC	3 cut(s)	338, 371, 981
SchI	GAGTC	1 cut(s)	1014
ScrFI	CCNGG	5 cut(s)	196, 293, 573, 623, 913
SduI	GDGCHC	2 cut(s)	101, 858
SexAI	ACCWGGT	1 cut(s)	621
SfaNI	GCATC	2 cut(s)	432, 947
SgrDI	CGTCGACG	1 cut(s)	877
SinI	GGWCC	2 cut(s)	338, 371
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	5 cut(s)	298, 323, 503, 711, 997
SsiI	CCGC	5 cut(s)	341, 380, 405, 492, 672
SspMI	CTAG	1 cut(s)	903
StyD4I	CCNGG	5 cut(s)	194, 291, 571, 621, 911
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	2 cut(s)	120, 652
TaiI	ACGT	2 cut(s)	188, 852
TaqI	TCGA	3 cut(s)	333, 587, 878
TaqII	GACCGA	1 cut(s)	746
TasI	AATT	5 cut(s)	298, 323, 503, 711, 997
TatI	WGTACW	1 cut(s)	792
TfiI	GAWTC	4 cut(s)	191, 225, 822, 869
Tru1I	TTAA	4 cut(s)	114, 243, 501, 716
Tru9I	TTAA	4 cut(s)	114, 243, 501, 716
TscAI	CASTG	4 cut(s)	101, 466, 655, 1012
TseFI	GTSAC	1 cut(s)	1035
Tsp45I	GTSAC	1 cut(s)	1035
TspDTI	ATGAA	4 cut(s)	13, 58, 789, 854
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	4 cut(s)	101, 466, 655, 1012
VpaK11BI	GGWCC	2 cut(s)	338, 371
XapI	RAATTY	2 cut(s)	323, 997
XmiI	GTMKAC	1 cut(s)	878
XmnI	GAANNNNTTC	1 cut(s)	1001
XspI	CTAG	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.