Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009706

Physical Location & Seq

Genomic Coordinates Forward (+)

13089586 .. 13092779

Gene Structure 3194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAATTTGGACACCGGAAAAGTTGAGTTTTTGTGGTCGTCAAAGGAGATTAATGCGAGAGCACATGAGTACTGGCCTCGTGTGATGGATATAGCTCGAAAAAATAAACTTCCTAGAATCATTAGGTGTAGTCAGATTATGTGTCGAACTGAGCAAGATGAGTTAACGGCAGCCCAAATTCTCTACCCATGCATGCAGTGTGCAGATATATTCTTCCTTCAGGCGGACATCTGCCAGTTGGGAATGGATCAACGTAAAGTCAATGTGCTTGCAAGAGAGTATTGTGATGACATAAAAAAGAAGAACAAACCTATTATCTTGTCACACCACATGTTACCTGGTTTGCAGCAAGGGCAGGAGAAAATGTCAAAAAGTGATGTATCATCCTCCATATTCATGGAAGATGAAGAGGCTGAAGTGAATTTGAAGATAAAGAAAGCTTACTGTCCTCCAAATGTTGTTGATGGGAATCCATGTATGGAGTATGTGAAGTATCTAATTCTACCTTGGTTCAATGAGTTTGTTGTAGAGCGGACTGAAAAGAATGGTGGAAATAAAACCTTCAAAACCTTTGAAGAATTAACTGCAGATTATGAAAGCGGCGAGCTACATCCAGCAGACCTTAAATCAGCTTTATCAAAAGCATTGAACAAGATACTCGAGCCTGTACGAGCACACTTCAAGAATGACAAAGCTGCCAAACAGCTATTGCAAAGTGTTAAGAACTATAGAATCACCAGGGTGGAACCTGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

253

Amino Acids

29.05

Weight (kDa)

8.03

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	3 - 221	2.8e-47	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0009706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47320 FvH4_6g47330
pyrus_communis	pycom06g08020
rosa_chinensis	RchiOBHm_Chr5g0057211 RchiOBHm_Chr6g0257261 RchiOBHm_Chr6g0275951
rosa_laevigata	RLG00000019640
rosa_multiflora	Rmu_sc0004043.1_g000002 Rmu_sc0009253.1_g000002 Rmu_sc0009253.1_g000003
rosa_roxburghii	Rroxscaffold_2G00106350
rosa_rugosa	Rorug02G0522500
rosa_samantha	Rh2AG397200 Rh2CG383800 Rh4AG189900 Rh4DG188700 Rh6AG209300 Rh6BG213500 Rh6CG216500 Rh6DG205600
rosa_wichuraiana	Rw4G016200 Rw6G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	532
AciI	CCGC	3 cut(s)	224, 532, 600
AclWI	GGATC	1 cut(s)	255
AcsI	RAATTY	3 cut(s)	4, 177, 421
AcuI	CTGAAG	2 cut(s)	203, 435
AfaI	GTAC	2 cut(s)	71, 669
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	6 cut(s)	427, 514, 565, 575, 649, 682
AjnI	CCWGG	3 cut(s)	337, 737, 748
AleI	CACNNNNGTG	1 cut(s)	740
AluBI	AGCT	6 cut(s)	95, 440, 607, 632, 695, 706
AluI	AGCT	6 cut(s)	95, 440, 607, 632, 695, 706
Alw21I	GWGCWC	2 cut(s)	64, 676
AlwI	GGATC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	3 cut(s)	170, 346, 695
ApoI	RAATTY	3 cut(s)	4, 177, 421
AseI	ATTAAT	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	659
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	64, 676
BbvI	GCAGC	3 cut(s)	182, 358, 682
BccI	CCATC	2 cut(s)	79, 458
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	3 cut(s)	339, 739, 750
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	585, 727
BisI	GCNGC	4 cut(s)	171, 347, 601, 696
BlsI	GCNGC	4 cut(s)	172, 348, 602, 697
BmcAI	AGTACT	1 cut(s)	71
Bme1390I	CCNGG	3 cut(s)	339, 739, 750
BmeT110I	CYCGRG	1 cut(s)	659
BmiI	GGNNCC	1 cut(s)	747
BmrFI	CCNGG	3 cut(s)	339, 739, 750
BsaBI	GATNNNNATC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	506, 738
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	77, 235
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	3 cut(s)	339, 739, 750
BseDI	CCNNGG	2 cut(s)	506, 738
BseGI	GGATG	2 cut(s)	383, 610
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	77, 235
BseXI	GCAGC	3 cut(s)	182, 358, 682
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	64, 676
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	64, 676
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	3 cut(s)	224, 532, 600
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	747
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	532
BsrI	ACTGG	2 cut(s)	77, 235
BssECI	CCNNGG	2 cut(s)	506, 738
BssMI	GATC	1 cut(s)	247
BssSI	CACGAG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	78
Bst2UI	CCWGG	3 cut(s)	339, 739, 750
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	3 cut(s)	194, 270, 605
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	383, 610
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	3 cut(s)	339, 739, 750
BstNSI	RCATGY	2 cut(s)	196, 334
BstSCI	CCNGG	3 cut(s)	337, 737, 748
BstSFI	CTRYAG	2 cut(s)	585, 727
BstV1I	GCAGC	3 cut(s)	182, 358, 682
BstXI	CCANNNNNNTGG	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	383, 610
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	3 cut(s)	194, 270, 605
CsiI	ACCWGGT	2 cut(s)	337, 748
Csp6I	GTAC	2 cut(s)	70, 668
CviAII	CATG	6 cut(s)	65, 189, 193, 331, 397, 474
CviQI	GTAC	2 cut(s)	70, 668
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	506
Eco57I	CTGAAG	2 cut(s)	203, 435
Eco88I	CYCGRG	1 cut(s)	659
EcoRII	CCWGG	3 cut(s)	337, 737, 748
EcoT14I	CCWWGG	1 cut(s)	506
EcoT22I	ATGCAT	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	6 cut(s)	68, 192, 196, 334, 400, 477
FatI	CATG	6 cut(s)	64, 188, 192, 330, 396, 473
Fnu4HI	GCNGC	4 cut(s)	171, 347, 601, 696
FokI	GGATG	2 cut(s)	370, 597
Fsp4HI	GCNGC	4 cut(s)	171, 347, 601, 696
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	4 cut(s)	171, 347, 601, 696
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	6 cut(s)	68, 192, 196, 334, 400, 477
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	3 cut(s)	117, 469, 732
HpaI	GTTAAC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	682
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	2 cut(s)	227, 571
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	7 cut(s)	192, 196, 203, 272, 346, 587, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	6 cut(s)	68, 192, 196, 334, 400, 477
KspAI	GTTAAC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	182, 358, 682
MabI	ACCWGGT	2 cut(s)	337, 748
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	2 cut(s)	321, 333
MalI	GATC	1 cut(s)	249
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	1 cut(s)	247
MboII	GAAGA	6 cut(s)	205, 313, 413, 419, 439, 587
MhlI	GDGCHC	2 cut(s)	64, 676
MluCI	AATT	5 cut(s)	4, 177, 421, 498, 578
MnlI	CCTC	4 cut(s)	87, 397, 403, 459
Mph1103I	ATGCAT	1 cut(s)	194
MseI	TTAA	6 cut(s)	51, 164, 581, 624, 720, 757
MslI	CAYNNNNRTG	2 cut(s)	395, 740
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	3 cut(s)	339, 739, 750
MvaI	CCWGG	3 cut(s)	339, 739, 750
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	6 cut(s)	68, 192, 196, 334, 400, 477
NlaIV	GGNNCC	1 cut(s)	747
NmuCI	GTSAC	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	194
NspI	RCATGY	2 cut(s)	196, 334
OliI	CACNNNNGTG	1 cut(s)	740
PaeI	GCATGC	1 cut(s)	196
PaeR7I	CTCGAG	1 cut(s)	659
PciI	ACATGT	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	117, 469, 732
PkrI	GCNGC	4 cut(s)	172, 348, 602, 697
PscI	ACATGT	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	337, 737, 748
PspGI	CCWGG	3 cut(s)	337, 737, 748
PspN4I	GGNNCC	1 cut(s)	747
PspXI	VCTCGAGB	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	589
RsaI	GTAC	2 cut(s)	71, 669
RsaNI	GTAC	2 cut(s)	70, 668
RseI	CAYNNNNRTG	2 cut(s)	395, 740
SaqAI	TTAA	6 cut(s)	51, 164, 581, 624, 720, 757
SatI	GCNGC	4 cut(s)	171, 347, 601, 696
Sau3AI	GATC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	339, 739, 750
SduI	GDGCHC	2 cut(s)	64, 676
SexAI	ACCWGGT	2 cut(s)	337, 748
SfcI	CTRYAG	2 cut(s)	585, 727
Sfr274I	CTCGAG	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	659
SmiMI	CAYNNNNRTG	2 cut(s)	395, 740
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SphI	GCATGC	1 cut(s)	196
Sse9I	AATT	5 cut(s)	4, 177, 421, 498, 578
SsiI	CCGC	3 cut(s)	224, 532, 600
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	337, 737, 748
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	97, 145, 660
TasI	AATT	5 cut(s)	4, 177, 421, 498, 578
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	3 cut(s)	117, 469, 732
Tru1I	TTAA	6 cut(s)	51, 164, 581, 624, 720, 757
Tru9I	TTAA	6 cut(s)	51, 164, 581, 624, 720, 757
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	3 cut(s)	170, 346, 695
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	4 cut(s)	17, 385, 420, 609
TspRI	CASTG	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	3 cut(s)	4, 177, 421
XceI	RCATGY	2 cut(s)	196, 334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	659
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	71
Zsp2I	ATGCAT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.