Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010884

Physical Location & Seq

Genomic Coordinates Reverse (-)

15801671 .. 15804775

Gene Structure 3105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTTTCTGCAGATGCTATGCGAACTGTCGTCGGTATCATCGGAAACGTCATCTCATTCATTTTGTTCCTCTCACCAGTGCAAACTTTTGTTCGAATTTGGAAAAAGGGGTCAGTGGAGCAATACTCACCAGTCCCATACCTTGCAACCCTATTTAACTGCATGGCATGGGCCCTGTACGGATTGCCTGTGGTGCACCCCAACAGTCTTCTGGTGGTGACCATCAATGGCTCTGCAATTTTCATTGAGCTTTCCTACGTCATCCTCTTCCTCATCTACTCATCTGACAAGAAGCAGAGGCTCAAAGTGCTTCTCGTGCTGCTTTTGGAGCTCGGTTTCATGGCTCTTCTGGCATTTCTTGTTATCAAATTGGCTCACACACACAACAAGAGGTCACTGATTGTTGGCTTAGTTTGCATTCTAGGTAACATCATGATGTATGCTTCACCTCTCTCTGTCATGAAATTGGTGATTACAACAAAAAGTGTGGAATACATGCCGTTTTTCCTCTCACTCTTTTCCTTTTTCAATAGCGTTGCCTGGTTCACATATGCTCTCATCCGTTTTGACATCTTCTTGACTATTCCGAATGGGTTGGGCTTACTTTTTGGATCAGCTCAACTGCTTCTCTATGCCACATACTACAAGAACACTAAAATACTGATGGCAGAAAAAAAAGCCAGACAATTGAGTTTGACAGAGGTGGTTTCCGGCAGAGATGAACCCAAAAAGATAGGCCGCATTCATCACAACGGCCGTGCTCCCTCTCAGAACAACGGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009507 GO:0009536 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

262

Amino Acids

29.21

Weight (kDa)

9.81

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	8e-22	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	134 - 218	4.4e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66770 AT4G10850
fragaria_vesca	FvH4_5g11560 FvH4_5g11560 FvH4_5g11560
malus_domestica	MD06G1112000.v1.1 MD14G1133400.v1.1
prunus_persica	Prupe.5G125100_v2.0.a1
pyrus_communis	pycom06g10500
rosa_chinensis	RchiOBHm_Chr7g0186191
rosa_laevigata	RLG00000004857
rosa_multiflora	Rmu_sc0009528.1_g000015
rosa_roxburghii	Rroxscaffold_3G00268330
rosa_rugosa	Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068800 Rh7BG084700 Rh7CG079300 Rh7DG079600
rosa_wichuraiana	Rw7G006620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	739
AclWI	GGATC	1 cut(s)	619
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	250, 331, 617
AluI	AGCT	3 cut(s)	250, 331, 617
Alw21I	GWGCWC	3 cut(s)	198, 333, 763
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	619
AoxI	GGCC	3 cut(s)	171, 736, 754
ApaI	GGGCCC	1 cut(s)	175
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	171, 172
AsuHPI	GGTGA	5 cut(s)	66, 120, 229, 438, 481
AsuII	TTCGAA	1 cut(s)	94
BaeGI	GKGCMC	2 cut(s)	175, 198
BanII	GRGCYC	2 cut(s)	175, 333
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	3 cut(s)	198, 333, 763
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	2 cut(s)	230, 658
BceAI	ACGGC	3 cut(s)	484, 741, 769
BciT130I	CCWGG	1 cut(s)	541
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	2 cut(s)	320, 739
BlsI	GCNGC	2 cut(s)	321, 740
Bme1390I	CCNGG	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	171, 172
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bpu14I	TTCGAA	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	77, 131
BseBI	CCWGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	261, 558
BseMII	CTCAG	1 cut(s)	782
BseNI	ACTGG	2 cut(s)	77, 131
BseSI	GKGCMC	2 cut(s)	175, 198
BseX3I	CGGCCG	1 cut(s)	754
BseXI	GCAGC	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	757
BshFI	GGCC	3 cut(s)	173, 738, 756
BsiEI	CGRYCG	1 cut(s)	757
BsiHKAI	GWGCWC	3 cut(s)	198, 333, 763
BsiSI	CCGG	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	2 cut(s)	417, 741
BsnI	GGCC	3 cut(s)	173, 738, 756
Bsp119I	TTCGAA	1 cut(s)	94
Bsp120I	GGGCCC	1 cut(s)	171
Bsp1286I	GDGCHC	4 cut(s)	175, 198, 333, 763
Bsp143I	GATC	1 cut(s)	611
BspACI	CCGC	1 cut(s)	739
BspANI	GGCC	3 cut(s)	173, 738, 756
BspCNI	CTCAG	1 cut(s)	781
BspHI	TCATGA	2 cut(s)	432, 459
BspLI	GGNNCC	1 cut(s)	173
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	619
BspQI	GCTCTTC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	77, 131
BssMI	GATC	1 cut(s)	611
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	2 cut(s)	28, 206
Bst6I	CTCTTC	2 cut(s)	272, 351
BstBI	TTCGAA	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	409, 768
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	261, 558
BstKTI	GATC	1 cut(s)	614
BstMBI	GATC	1 cut(s)	611
BstMCI	CGRYCG	1 cut(s)	757
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 307, 316, 328, 350, 414
BstNI	CCWGG	1 cut(s)	541
BstNSI	RCATGY	1 cut(s)	499
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	175, 198
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	200
BstZI	CGGCCG	1 cut(s)	754
BsuRI	GGCC	3 cut(s)	173, 738, 756
BtsCI	GGATG	2 cut(s)	261, 558
BtsIMutI	CAGTG	3 cut(s)	84, 120, 395
CciI	TCATGA	2 cut(s)	432, 459
Cfr13I	GGNCC	2 cut(s)	171, 172
Csp6I	GTAC	1 cut(s)	178
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	7 cut(s)	163, 168, 340, 433, 460, 496, 783
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	409, 768
DpnI	GATC	1 cut(s)	613
DpnII	GATC	1 cut(s)	611
EaeI	YGGCCR	1 cut(s)	754
EagI	CGGCCG	1 cut(s)	754
Eam1104I	CTCTTC	2 cut(s)	272, 351
EarI	CTCTTC	2 cut(s)	272, 351
Ecl136II	GAGCTC	1 cut(s)	331
EclXI	CGGCCG	1 cut(s)	754
Eco24I	GRGCYC	2 cut(s)	175, 333
Eco52I	CGGCCG	1 cut(s)	754
Eco53kI	GAGCTC	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	539
EcoT38I	GRGCYC	2 cut(s)	175, 333
FaeI	CATG	7 cut(s)	166, 171, 343, 436, 463, 499, 786
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	7 cut(s)	162, 167, 339, 432, 459, 495, 782
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	320, 739
FokI	GGATG	2 cut(s)	248, 545
FriOI	GRGCYC	2 cut(s)	175, 333
Fsp4HI	GCNGC	2 cut(s)	320, 739
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	2 cut(s)	320, 739
HaeIII	GGCC	3 cut(s)	173, 738, 756
HapII	CCGG	1 cut(s)	711
Hin1II	CATG	7 cut(s)	166, 171, 343, 436, 463, 499, 786
HpaII	CCGG	1 cut(s)	711
HphI	GGTGA	5 cut(s)	66, 120, 229, 438, 481
Hpy166II	GTNNAC	2 cut(s)	196, 546
Hpy188I	TCNGA	4 cut(s)	44, 286, 588, 771
Hpy188III	TCNNGA	3 cut(s)	433, 460, 577
Hpy8I	GTNNAC	2 cut(s)	196, 546
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	28, 206
HpyCH4IV	ACGT	2 cut(s)	48, 258
HpyCH4V	TGCA	7 cut(s)	11, 82, 146, 162, 196, 236, 417
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 307, 316, 328, 350, 414
HpyF3I	CTNAG	2 cut(s)	409, 768
HpySE526I	ACGT	2 cut(s)	48, 258
Hsp92II	CATG	7 cut(s)	166, 171, 343, 436, 463, 499, 786
Kzo9I	GATC	1 cut(s)	611
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	118, 328, 766
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	48, 258
MaeIII	GTNAC	3 cut(s)	217, 393, 425
MalI	GATC	1 cut(s)	613
MboI	GATC	1 cut(s)	611
MboII	GAAGA	4 cut(s)	200, 259, 338, 565
MfeI	CAATTG	1 cut(s)	686
MhlI	GDGCHC	4 cut(s)	175, 198, 333, 763
MluCI	AATT	5 cut(s)	96, 237, 368, 464, 686
MnlI	CCTC	9 cut(s)	80, 275, 281, 291, 384, 459, 518, 694, 775
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	1 cut(s)	541
MunI	CAATTG	1 cut(s)	686
Mva1269I	GAATGC	2 cut(s)	417, 741
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	6 cut(s)	193, 307, 316, 328, 350, 414
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	1 cut(s)	611
NlaIII	CATG	7 cut(s)	166, 171, 343, 436, 463, 499, 786
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	2 cut(s)	217, 393
NspI	RCATGY	1 cut(s)	499
NspV	TTCGAA	1 cut(s)	94
PagI	TCATGA	2 cut(s)	432, 459
PciSI	GCTCTTC	1 cut(s)	351
PctI	GAATGC	2 cut(s)	417, 741
PkrI	GCNGC	2 cut(s)	321, 740
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	539
PspEI	GGTNACC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	173
PspOMI	GGGCCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	171, 172
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	320, 739
Sau3AI	GATC	1 cut(s)	611
Sau96I	GGNCC	2 cut(s)	171, 172
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	4 cut(s)	175, 198, 333, 763
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	5 cut(s)	96, 237, 368, 464, 686
SsiI	CCGC	1 cut(s)	739
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	539
TaaI	ACNGT	2 cut(s)	28, 206
TaiI	ACGT	2 cut(s)	51, 261
TaqI	TCGA	1 cut(s)	94
TasI	AATT	5 cut(s)	96, 237, 368, 464, 686
TauI	GCSGC	1 cut(s)	741
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	3 cut(s)	84, 120, 402
TseFI	GTSAC	2 cut(s)	217, 393
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	2 cut(s)	217, 393
TspDTI	ATGAA	6 cut(s)	49, 232, 328, 476, 734, 735
TspGWI	ACGGA	2 cut(s)	195, 551
TspRI	CASTG	3 cut(s)	84, 120, 402
VneI	GTGCAC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.