Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013125

Physical Location & Seq

Genomic Coordinates Reverse (-)

18449923 .. 18453642

Gene Structure 3720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGCTCATAACTCTTCTAAAATTACAAACTATTGCCACTCGTTCGCATGCATCAATGGTTGTCAGAGAAAAAAAATACAAAGTCCCAAAAGCTCAAAGGAAATACCGAAGAAAAGGAACAACTTTATCGCGAGGACACACAGAGCGGGTCACTGAGTCAGCTCAGCCCAGCACAGGGGAGATGGCAAAGCAAGAACCGGACTCCGTCGTCTCTGATCTCATCGGCTTCCTAAACGCCGCCCCCACCGCCTTCCACGCCGTCGACGAGGCGAAGAAGCGGCTGCGAAGCGCGGGCTACGAACAAGTTTCGGAGAGGGAGGATTGGAAATTGGAGGCTGGTAAAAAGTATTTCTTCACCAGGAATTACTCCACCATTGTTGCTTTCGCAATCGGTAAAAAGTATGTTGCTGGAAACGGATTTCATATAGTTGGTGCTCATACAGATAGTCCTTGTCTCAAATTGAAACCGGTTTCCAAGGTAGCTAAAGGCGGGTACTTGGAAGTGGGTGTCCAAACATATGGCAGTGGCTTGTGGCATACATGGTTCGACCGTGACTTGACAATTGCTGGAAGGGTGATAGTAAGAGAAGAAAAGGATGGCTCTGTTTCGTATTTGCATAAACTTGTTAGAATTGAGGAGCCCATAATGCGGATCCCTACTTTGGCAATTCACTTAGACAGGGATGTTAGAGATGCATTCAAGGTGAATGCGCAGACGCATCTTCTTCCCGTCTTGGCAACGGCAGTCAAGGCAGAGCTCAATAAAGTGGTTGCTGAAGATGGTGAGGCTGATAACGATATTCTGACTTCTGGAGAGAAATCTAATGAGAAAACAACCTCAAATGCCTTGAAGCATCATTCACTTCTACTACAGCTACTTGCAGATCAGCTTGGATGTGAACCGGAACATATCTCTGATTTTGAATTGCAAGCGTGTGATACTCAACCAAGCATAATAGCTGGTGCAGCAAAAGAATTTGTTTTCTCAGGAAGGCTTGATAATCTTTGCATGTCGTTTTGTTCTCTAAAGGCATTGGTAGACGCAACATCTTCTGACAGCAACCTTGAAGATGAGTCCGGCGTTAGAATGGTGGCTTTGTTTGATCATGAGGAGGTTGGATCTGATTCCGCCCAAGGGGCTGGTTCTCCAGCCATGTTAAATACTCTTTCACGAATTACACACTCCTTCACCACAGATTCTAAGAAAGCTATTCAGAGGAGCTTTCTTGTATCTGCTGACATGGCACATGCCTTGCATCCTAATTATATGGACAAACATGAACAGAATCACCAGCCCAAGTTGCATGGCGGACTTGTGATCAAACACAATGCAAATCAACGCTATGCAACCAATGCTGTCACTGCATTAATATTCAGGGAGATAGCAAGGAATCATAGCCTTCCTGTCCAGGACTTTGTGGTTCGTAATGACATGGCATGCGGTTCAACCATCGGTCCCATTCTTGCAAGTGGAGTGGGAATACGAACAGTTGATGTAGGTGCGCCGCAGCTGTCAATGCACAGCATACGAGAAATGTGTGCTGTTGATGATGTGAAGTATTCCTACGAGCATTTCAAAGCCTTTTTCCAGGAGTTCACTCGTCTGGATGCAAAGATTAAAGTGGATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0042802 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

544

Amino Acids

59.99

Weight (kDa)

7.71

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	76 - 529	1.9e-162	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60160
fragaria_vesca	FvH4_5g07860 FvH4_5g07860 FvH4_5g07860
malus_domestica	MD06G1145400.v1.1 MD14G1160100.v1.1
prunus_persica	Prupe.5G153700_v2.0.a1
pyrus_communis	pycom06g13470 pycom14g13360
rosa_chinensis	RchiOBHm_Chr7g0190601
rosa_laevigata	RLG00000004511
rosa_roxburghii	Rroxscaffold_3G00264470
rosa_rugosa	Rorug06G0505600
rosa_samantha	Rh7AG112200 Rh7BG115000 Rh7CG117100 Rh7DG116200
rosa_wichuraiana	Rw7G009790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
Acc16I	TGCGCA	1 cut(s)	711
AccBSI	CCGCTC	1 cut(s)	145
AccI	GTMKAC	2 cut(s)	261, 1038
AccII	CGCG	2 cut(s)	130, 290
AclWI	GGATC	3 cut(s)	646, 659, 1126
AcsI	RAATTY	1 cut(s)	974
AcuI	CTGAAG	1 cut(s)	795
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	5 cut(s)	173, 174, 648, 661, 1134
AgeI	ACCGGT	1 cut(s)	466
AgsI	TTSAA	7 cut(s)	463, 700, 850, 923, 1067, 1446, 1576
AjnI	CCWGG	3 cut(s)	356, 1407, 1587
Alw21I	GWGCWC	2 cut(s)	436, 759
Alw26I	GTCTC	2 cut(s)	214, 458
AlwI	GGATC	3 cut(s)	646, 659, 1126
ApeKI	GCWGC	3 cut(s)	280, 965, 1507
ApoI	RAATTY	1 cut(s)	974
AseI	ATTAAT	1 cut(s)	1367
AsiGI	ACCGGT	1 cut(s)	466
AspLEI	GCGC	3 cut(s)	290, 712, 1504
AspS9I	GGNCC	1 cut(s)	1454
AsuHPI	GGTGA	6 cut(s)	346, 586, 715, 794, 1180, 1280
AvaII	GGWCC	1 cut(s)	1454
BamHI	GGATCC	1 cut(s)	651
BanII	GRGCYC	2 cut(s)	642, 759
BarI	GAAGNNNNNNTAC	2 cut(s)	1547, 1579
Bbv12I	GWGCWC	2 cut(s)	436, 759
BbvI	GCAGC	3 cut(s)	267, 977, 1519
BccI	CCATC	4 cut(s)	175, 590, 773, 1457
BceAI	ACGGC	2 cut(s)	242, 756
BciT130I	CCWGG	3 cut(s)	358, 1409, 1589
BclI	TGATCA	2 cut(s)	1102, 1317
BcoDI	GTCTC	2 cut(s)	214, 458
BfmI	CTRYAG	1 cut(s)	869
BglI	GCCNNNNNGGC	1 cut(s)	1136
BisI	GCNGC	6 cut(s)	237, 278, 281, 966, 1505, 1508
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	6 cut(s)	238, 279, 282, 967, 1506, 1509
Bme1390I	CCNGG	3 cut(s)	358, 1409, 1589
Bme18I	GGWCC	1 cut(s)	1454
BmgT120I	GGNCC	1 cut(s)	1454
BmiI	GGNNCC	3 cut(s)	639, 653, 1456
BmrFI	CCNGG	3 cut(s)	358, 1409, 1589
BmsI	GCATC	7 cut(s)	59, 682, 727, 862, 1264, 1597, 1615
BpmI	CTGGAG	2 cut(s)	831, 1131
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	474, 1132
BsaWI	WCCGGW	3 cut(s)	196, 466, 901
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 174, 648, 661, 1134
Bse118I	RCCGGY	1 cut(s)	466
BseBI	CCWGG	3 cut(s)	358, 1409, 1589
BseDI	CCNNGG	2 cut(s)	474, 1132
BseGI	GGATG	6 cut(s)	601, 688, 899, 1255, 1612, 1630
BseLI	CCNNNNNNNGG	5 cut(s)	173, 174, 648, 661, 1134
BseMII	CTCAG	3 cut(s)	144, 176, 999
BseRI	GAGGAG	3 cut(s)	650, 1124, 1231
BseXI	GCAGC	3 cut(s)	267, 977, 1519
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	984
Bsh1236I	CGCG	2 cut(s)	130, 290
Bsh1285I	CGRYCG	1 cut(s)	550
BshTI	ACCGGT	1 cut(s)	466
BsiEI	CGRYCG	1 cut(s)	550
BsiHKAI	GWGCWC	2 cut(s)	436, 759
BsiSI	CCGG	4 cut(s)	197, 467, 902, 1077
BslFI	GGGAC	2 cut(s)	68, 1440
BslI	CCNNNNNNNGG	5 cut(s)	173, 174, 648, 661, 1134
BsmAI	GTCTC	2 cut(s)	214, 458
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	2 cut(s)	68, 1440
BsmI	GAATGC	2 cut(s)	695, 712
Bsp1286I	GDGCHC	3 cut(s)	436, 642, 759
Bsp143I	GATC	6 cut(s)	214, 651, 883, 1102, 1118, 1317
Bsp1720I	GCTNAGC	1 cut(s)	162
Bsp68I	TCGCGA	1 cut(s)	130
BspCNI	CTCAG	3 cut(s)	145, 175, 998
BspFNI	CGCG	2 cut(s)	130, 290
BspHI	TCATGA	1 cut(s)	1105
BspLI	GGNNCC	3 cut(s)	639, 653, 1456
BspPI	GGATC	3 cut(s)	646, 659, 1126
BsrBI	CCGCTC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	474, 1132
BssMI	GATC	6 cut(s)	214, 651, 883, 1102, 1118, 1317
BssT1I	CCWWGG	2 cut(s)	474, 1132
Bst2UI	CCWGG	3 cut(s)	358, 1409, 1589
Bst4CI	ACNGT	2 cut(s)	551, 1489
Bst6I	CTCTTC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	1352
BstC8I	GCNNGC	4 cut(s)	48, 292, 930, 1438
BstDEI	CTNAG	5 cut(s)	153, 162, 673, 985, 1200
BstF5I	GGATG	6 cut(s)	601, 688, 899, 1255, 1612, 1630
BstFNI	CGCG	2 cut(s)	130, 290
BstHHI	GCGC	3 cut(s)	290, 712, 1504
BstKTI	GATC	6 cut(s)	217, 654, 886, 1105, 1121, 1320
BstMAI	GTCTC	2 cut(s)	214, 458
BstMBI	GATC	6 cut(s)	214, 651, 883, 1102, 1118, 1317
BstMCI	CGRYCG	1 cut(s)	550
BstNI	CCWGG	3 cut(s)	358, 1409, 1589
BstNSI	RCATGY	4 cut(s)	50, 1012, 1250, 1440
BstSCI	CCNGG	3 cut(s)	356, 1407, 1587
BstSFI	CTRYAG	1 cut(s)	869
BstUI	CGCG	2 cut(s)	130, 290
BstV1I	GCAGC	3 cut(s)	267, 977, 1519
BstX2I	RGATCY	2 cut(s)	651, 1118
BstXI	CCANNNNNNTGG	2 cut(s)	518, 1139
BstYI	RGATCY	2 cut(s)	651, 1118
BtsCI	GGATG	6 cut(s)	601, 688, 899, 1255, 1612, 1630
BtsI	GCAGTG	2 cut(s)	529, 1359
BtsIMutI	CAGTG	3 cut(s)	150, 529, 1359
BtuMI	TCGCGA	1 cut(s)	130
Cac8I	GCNNGC	4 cut(s)	48, 292, 930, 1438
CciI	TCATGA	1 cut(s)	1105
CfoI	GCGC	3 cut(s)	290, 712, 1504
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	1454
CseI	GACGC	2 cut(s)	724, 1049
Csp6I	GTAC	1 cut(s)	493
CspAI	ACCGGT	1 cut(s)	466
CspCI	CAANNNNNGTGG	4 cut(s)	358, 393, 1455, 1490
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	5 cut(s)	153, 162, 673, 985, 1200
DpnI	GATC	6 cut(s)	216, 653, 885, 1104, 1120, 1319
DpnII	GATC	6 cut(s)	214, 651, 883, 1102, 1118, 1317
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	2 cut(s)	1117, 1323
Ecl136II	GAGCTC	1 cut(s)	757
Eco130I	CCWWGG	2 cut(s)	474, 1132
Eco24I	GRGCYC	2 cut(s)	642, 759
Eco47I	GGWCC	1 cut(s)	1454
Eco53kI	GAGCTC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	795
EcoICRI	GAGCTC	1 cut(s)	757
EcoRII	CCWGG	3 cut(s)	356, 1407, 1587
EcoT14I	CCWWGG	2 cut(s)	474, 1132
EcoT22I	ATGCAT	2 cut(s)	52, 697
EcoT38I	GRGCYC	2 cut(s)	642, 759
ErhI	CCWWGG	2 cut(s)	474, 1132
Esp3I	CGTCTC	1 cut(s)	214
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	2 cut(s)	68, 1440
FauI	CCCGC	3 cut(s)	138, 283, 482
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	2 cut(s)	1102, 1317
FblI	GTMKAC	2 cut(s)	261, 1038
Fnu4HI	GCNGC	6 cut(s)	237, 278, 281, 966, 1505, 1508
FokI	GGATG	5 cut(s)	608, 695, 906, 1242, 1619
FriOI	GRGCYC	2 cut(s)	642, 759
Fsp4HI	GCNGC	6 cut(s)	237, 278, 281, 966, 1505, 1508
FspI	TGCGCA	1 cut(s)	711
GlaI	GCGC	3 cut(s)	289, 711, 1503
GluI	GCNGC	6 cut(s)	237, 278, 281, 966, 1505, 1508
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	2 cut(s)	831, 1131
HapII	CCGG	4 cut(s)	197, 467, 902, 1077
HgaI	GACGC	2 cut(s)	724, 1049
HhaI	GCGC	3 cut(s)	290, 712, 1504
Hin6I	GCGC	3 cut(s)	288, 710, 1502
HinP1I	GCGC	3 cut(s)	288, 710, 1502
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	7 cut(s)	155, 200, 1073, 1124, 1196, 1285, 1390
HpaII	CCGG	4 cut(s)	197, 467, 902, 1077
HphI	GGTGA	6 cut(s)	346, 586, 715, 794, 1180, 1280
Hpy166II	GTNNAC	4 cut(s)	262, 899, 1039, 1596
Hpy188I	TCNGA	8 cut(s)	65, 214, 310, 804, 916, 1054, 1123, 1215
Hpy188III	TCNNGA	6 cut(s)	129, 810, 987, 1106, 1170, 1604
Hpy8I	GTNNAC	4 cut(s)	262, 899, 1039, 1596
Hpy99I	CGWCG	3 cut(s)	209, 263, 266
HpyAV	CCTTC	5 cut(s)	259, 564, 984, 1195, 1409
HpyCH4III	ACNGT	2 cut(s)	551, 1489
HpyF3I	CTNAG	5 cut(s)	153, 162, 673, 985, 1200
HspAI	GCGC	3 cut(s)	288, 710, 1502
Ksp22I	TGATCA	2 cut(s)	1102, 1317
Kzo9I	GATC	6 cut(s)	214, 651, 883, 1102, 1118, 1317
LmnI	GCTCC	2 cut(s)	637, 1218
Lsp1109I	GCAGC	3 cut(s)	267, 977, 1519
LweI	GCATC	7 cut(s)	59, 682, 727, 862, 1264, 1597, 1615
MaeIII	GTNAC	3 cut(s)	148, 551, 1357
MalI	GATC	6 cut(s)	216, 653, 885, 1104, 1120, 1319
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	6 cut(s)	214, 651, 883, 1102, 1118, 1317
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	651, 1118
MhlI	GDGCHC	3 cut(s)	436, 642, 759
MlyI	GAGTC	3 cut(s)	164, 194, 1082
MmeI	TCCRAC	1 cut(s)	1096
Mph1103I	ATGCAT	2 cut(s)	52, 697
MseI	TTAA	3 cut(s)	1157, 1367, 1617
MspA1I	CMGCKG	1 cut(s)	1510
MspI	CCGG	4 cut(s)	197, 467, 902, 1077
MspR9I	CCNGG	3 cut(s)	358, 1409, 1589
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	2 cut(s)	695, 712
MvaI	CCWGG	3 cut(s)	358, 1409, 1589
MvnI	CGCG	2 cut(s)	130, 290
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	6 cut(s)	214, 651, 883, 1102, 1118, 1317
NlaIV	GGNNCC	3 cut(s)	639, 653, 1456
NmuCI	GTSAC	3 cut(s)	148, 551, 1357
NruI	TCGCGA	1 cut(s)	130
NsbI	TGCGCA	1 cut(s)	711
NsiI	ATGCAT	2 cut(s)	52, 697
NspI	RCATGY	4 cut(s)	50, 1012, 1250, 1440
PaeI	GCATGC	2 cut(s)	50, 1440
PagI	TCATGA	1 cut(s)	1105
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	2 cut(s)	695, 712
PfeI	GAWTC	4 cut(s)	1124, 1196, 1285, 1390
PflFI	GACNNNGTC	1 cut(s)	203
PfoI	TCCNGGA	2 cut(s)	1407, 1587
PinAI	ACCGGT	1 cut(s)	466
PkrI	GCNGC	6 cut(s)	238, 279, 282, 967, 1506, 1509
PleI	GAGTC	3 cut(s)	163, 194, 1081
PpsI	GAGTC	3 cut(s)	163, 194, 1081
PshBI	ATTAAT	1 cut(s)	1367
Psp124BI	GAGCTC	1 cut(s)	759
Psp6I	CCWGG	3 cut(s)	356, 1407, 1587
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	3 cut(s)	356, 1407, 1587
PspN4I	GGNNCC	3 cut(s)	639, 653, 1456
PspPI	GGNCC	1 cut(s)	1454
PsuI	RGATCY	2 cut(s)	651, 1118
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	1510
RruI	TCGCGA	1 cut(s)	130
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SacI	GAGCTC	1 cut(s)	759
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	1157, 1367, 1617
SatI	GCNGC	6 cut(s)	237, 278, 281, 966, 1505, 1508
Sau3AI	GATC	6 cut(s)	214, 651, 883, 1102, 1118, 1317
Sau96I	GGNCC	1 cut(s)	1454
SchI	GAGTC	3 cut(s)	164, 194, 1082
ScrFI	CCNGG	3 cut(s)	358, 1409, 1589
SduI	GDGCHC	3 cut(s)	436, 642, 759
SfaNI	GCATC	7 cut(s)	59, 682, 727, 862, 1264, 1597, 1615
SfcI	CTRYAG	1 cut(s)	869
SgrDI	CGTCGACG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	1454
SphI	GCATGC	2 cut(s)	50, 1440
SspI	AATATT	1 cut(s)	1371
SstI	GAGCTC	1 cut(s)	759
StyD4I	CCNGG	3 cut(s)	356, 1407, 1587
StyI	CCWWGG	2 cut(s)	474, 1132
TaaI	ACNGT	2 cut(s)	551, 1489
TaqI	TCGA	2 cut(s)	261, 546
TaqII	GACCGA	1 cut(s)	1442
TauI	GCSGC	3 cut(s)	239, 280, 1507
TfiI	GAWTC	4 cut(s)	1124, 1196, 1285, 1390
Tru1I	TTAA	3 cut(s)	1157, 1367, 1617
Tru9I	TTAA	3 cut(s)	1157, 1367, 1617
TscAI	CASTG	3 cut(s)	157, 529, 1366
TseFI	GTSAC	3 cut(s)	148, 551, 1357
TseI	GCWGC	3 cut(s)	280, 965, 1507
Tsp45I	GTSAC	3 cut(s)	148, 551, 1357
TspDTI	ATGAA	2 cut(s)	410, 1293
TspGWI	ACGGA	2 cut(s)	193, 429
TspRI	CASTG	3 cut(s)	157, 529, 1366
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	1454
VspI	ATTAAT	1 cut(s)	1367
XapI	RAATTY	1 cut(s)	974
XceI	RCATGY	4 cut(s)	50, 1012, 1250, 1440
XmiI	GTMKAC	2 cut(s)	261, 1038
Zsp2I	ATGCAT	2 cut(s)	52, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.