pycom06g13780

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0019270
Physical Location & Seq
Reverse (-)
18654644 .. 18655834
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1191 bp
ATGTCTTCAGCTTCGACGTCCCAACCTATTGTTCCTAAAACCGATTATATTGAGGAGAAGGAAGACGAAGAAGCCTACCGGAAAATTGATGCCGAAATATGTGGAATGCTGCCAAATCTTCCGAAAGAGAAGGGTTGGACCTCCGAAGACTTGGTTCAGTACCAAGGCTTCTGGATACATCCTACCTTTGCCTTAAAAGCAGCGGTGCACCTTCAACACCATTTCAACTTTTTCCAAACAACCGGAAGTTCTACCAGCGCCGCCCGTGGGTCGTTGCCCATATACTTCTTAGCCACACTTCCGAAATCAGGTACGACGTGGCTTAGAGCACTCATGTTTGCTACCCTCAACAGAAGCCTCTATGATGCTGCCTCTCCTCACCATCCCTTGCTCACAACTGGGCCCCACGACTGTTTTCCTTTCTTGGAGATGGATAACATGCTTGGAAACCATGATCACAGCCGTCCCGTAACCTCACTTGATCATGATCATCACGACGATCGTGACGGTGGTGATGCTATGATTGATAATTATGTCCCGCCTACAAGCACTACTCAACTCTTTGCGACCCACCTGCCTTACTCTTTGTTCCCAAAATCTGTGACTACTTCTAGTAGTACTTACGGTGTGTCAAAATTCGTTTACGTTTGCCGCAACCCTAAAGATGTATTCATTTCTTTATGGAAGTTCGGGAGCAAAGTTAAAGCAGTAAACACAGGACTTGCACCCTTCTCACTAGAAGAAGCATTTGAGCTTTTCTGCCGCGGAGTCTGCCCATACGGGCCCTATTGGGACCATGTGCTAGGGTTTTGGAAAGCAAGCTTGGAAATGCCAGAGCAAGTTTTGTTCTTAAAATATGAGGATCTGAGGAAGGAGCCATCTGCTAATGTGAAGAGACTGGCTGAGTTCTTGGGTCAACCTTTTTCAGAGGAGGAGGAGAGCGAAGGGGTGGTGCAGCAGATCATAAAGCTTTGTAGTTTTGAGAATCTGAGCAGCATGGAGATAAATAAAACCTCCAGGGCGCAACAGTACCTTGTTAAAGCCAATATTGTAGTCGAGAACAGTGATTTCTTCAGGAAAGGCCAAGTTGGGGATTGGAAAAACTTCTTCACTGATGACATGGCAAAACGTATGGATCAGATCATAGATGAGAGGTTCAGTGGTTCTGGATTGACATTTGCTAATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

397

Amino Acids

44.84

Weight (kDa)

5.54

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 96 - 390 3.6e-66 Sulfotransferase domain
Sulfotransfer_3 PF13469 96 - 310 5.1e-09 Sulfotransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 582
AatII GACGTC 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 582
AccII CGCG 1 cut(s) 765
AciI CCGC 6 cut(s) 203, 261, 539, 652, 763, 765
AclWI GGATC 2 cut(s) 870, 1143
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 1 cut(s) 1057
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 4 cut(s) 161, 313, 619, 1031
AfiI CCNNNNNNNGG 3 cut(s) 267, 308, 1090
AgsI TTSAA 2 cut(s) 215, 226
AjiI CACGTC 1 cut(s) 318
AjnI CCWGG 1 cut(s) 1016
AjuI GAANNNNNNNTTGG 4 cut(s) 15, 47, 806, 838
AluBI AGCT 4 cut(s) 11, 754, 822, 970
AluI AGCT 4 cut(s) 11, 754, 822, 970
Alw21I GWGCWC 2 cut(s) 210, 331
Alw26I GTCTC 1 cut(s) 889
Alw44I GTGCAC 1 cut(s) 206
AlwI GGATC 2 cut(s) 870, 1143
AoxI GGCC 3 cut(s) 401, 782, 1081
ApaI GGGCCC 2 cut(s) 405, 786
ApaLI GTGCAC 1 cut(s) 206
ApeKI GCWGC 5 cut(s) 109, 200, 368, 955, 993
ApoI RAATTY 1 cut(s) 635
Asp700I GAANNNNTTC 1 cut(s) 1103
AspLEI GCGC 2 cut(s) 260, 1024
AspS9I GGNCC 6 cut(s) 138, 401, 402, 782, 783, 793
AsuHPI GGTGA 2 cut(s) 371, 524
AvaII GGWCC 2 cut(s) 138, 793
BaeGI GKGCMC 3 cut(s) 210, 405, 786
BanII GRGCYC 2 cut(s) 405, 786
BarI GAAGNNNNNNTAC 2 cut(s) 152, 184
BbsI GAAGAC 2 cut(s) 69, 153
Bbv12I GWGCWC 2 cut(s) 210, 331
BbvI GCAGC 5 cut(s) 96, 212, 355, 967, 1005
BccI CCATC 3 cut(s) 390, 424, 886
BceAI ACGGC 1 cut(s) 447
BcgI CGANNNNNNTGC 2 cut(s) 556, 590
BciT130I CCWGG 1 cut(s) 1018
BciVI GTATCC 1 cut(s) 168
BclI TGATCA 3 cut(s) 454, 481, 487
BcoDI GTCTC 1 cut(s) 889
BfaI CTAG 3 cut(s) 612, 737, 803
BfoI RGCGCY 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 582
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 8 cut(s) 110, 201, 261, 369, 652, 763, 956, 994
BlsI GCNGC 8 cut(s) 111, 202, 262, 370, 653, 764, 957, 995
BmcAI AGTACT 1 cut(s) 619
Bme1390I CCNGG 1 cut(s) 1018
Bme18I GGWCC 2 cut(s) 138, 793
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 6 cut(s) 138, 401, 402, 782, 783, 793
BmiI GGNNCC 5 cut(s) 403, 404, 784, 794, 876
BmrFI CCNGG 1 cut(s) 1018
BmrI ACTGGG 1 cut(s) 408
BmsI GCATC 3 cut(s) 79, 355, 505
BmuI ACTGGG 1 cut(s) 408
BpiI GAAGAC 2 cut(s) 69, 153
BpmI CTGGAG 1 cut(s) 1000
BsaBI GATNNNNATC 1 cut(s) 486
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 4 cut(s) 163, 265, 763, 1017
BsaWI WCCGGW 2 cut(s) 78, 242
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 308, 1090
Bse1I ACTGG 2 cut(s) 403, 903
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 1018
BseDI CCNNGG 4 cut(s) 163, 265, 763, 1017
BseGI GGATG 2 cut(s) 178, 382
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 3 cut(s) 267, 308, 1090
BseMII CTCAG 3 cut(s) 857, 894, 980
BseNI ACTGG 2 cut(s) 403, 903
BseRI GAGGAG 5 cut(s) 68, 366, 944, 947, 950
BseSI GKGCMC 3 cut(s) 210, 405, 786
BseXI GCAGC 5 cut(s) 96, 212, 355, 967, 1005
BsgI GTGCAG 1 cut(s) 974
Bsh1236I CGCG 1 cut(s) 765
Bsh1285I CGRYCG 1 cut(s) 502
BshFI GGCC 3 cut(s) 403, 784, 1083
BsiEI CGRYCG 1 cut(s) 502
BsiHKAI GWGCWC 2 cut(s) 210, 331
BsiSI CCGG 2 cut(s) 79, 243
BslFI GGGAC 4 cut(s) 4, 450, 521, 806
BslI CCNNNNNNNGG 3 cut(s) 267, 308, 1090
BsmAI GTCTC 1 cut(s) 889
BsmFI GGGAC 4 cut(s) 4, 450, 521, 806
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 3 cut(s) 403, 784, 1083
Bsp120I GGGCCC 2 cut(s) 401, 782
Bsp1286I GDGCHC 4 cut(s) 210, 331, 405, 786
Bsp143I GATC 8 cut(s) 454, 481, 487, 499, 862, 960, 1135, 1140
BspACI CCGC 6 cut(s) 203, 261, 539, 652, 763, 765
BspANI GGCC 3 cut(s) 403, 784, 1083
BspCNI CTCAG 3 cut(s) 858, 895, 981
BspFNI CGCG 1 cut(s) 765
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 5 cut(s) 403, 404, 784, 794, 876
BspMI ACCTGC 1 cut(s) 582
BspPI GGATC 2 cut(s) 870, 1143
BsrI ACTGG 2 cut(s) 403, 903
BssECI CCNNGG 4 cut(s) 163, 265, 763, 1017
BssMI GATC 8 cut(s) 454, 481, 487, 499, 862, 960, 1135, 1140
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 1018
Bst4CI ACNGT 5 cut(s) 413, 509, 626, 1029, 1064
Bst6I CTCTTC 1 cut(s) 887
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 820
BstDEI CTNAG 5 cut(s) 289, 323, 866, 903, 989
BstDSI CCRYGG 2 cut(s) 265, 763
BstF5I GGATG 2 cut(s) 178, 382
BstFNI CGCG 1 cut(s) 765
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 2 cut(s) 260, 1024
BstKTI GATC 8 cut(s) 457, 484, 490, 502, 865, 963, 1138, 1143
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 8 cut(s) 454, 481, 487, 499, 862, 960, 1135, 1140
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 2 cut(s) 197, 771
BstNI CCWGG 1 cut(s) 1018
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 1016
BstSLI GKGCMC 3 cut(s) 210, 405, 786
BstUI CGCG 1 cut(s) 765
BstV1I GCAGC 5 cut(s) 96, 212, 355, 967, 1005
BstV2I GAAGAC 2 cut(s) 69, 153
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 3 cut(s) 403, 784, 1083
BtgI CCRYGG 2 cut(s) 265, 763
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 2 cut(s) 178, 382
BtsIMutI CAGTG 3 cut(s) 1069, 1110, 1165
BveI ACCTGC 1 cut(s) 582
Cac8I GCNNGC 1 cut(s) 820
CciI TCATGA 1 cut(s) 484
CfoI GCGC 2 cut(s) 260, 1024
Cfr13I GGNCC 6 cut(s) 138, 401, 402, 782, 783, 793
Cfr42I CCGCGG 1 cut(s) 766
Csp6I GTAC 4 cut(s) 160, 312, 618, 1030
CviAII CATG 7 cut(s) 334, 439, 452, 485, 797, 997, 1120
CviQI GTAC 4 cut(s) 160, 312, 618, 1030
DdeI CTNAG 5 cut(s) 289, 323, 866, 903, 989
DpnI GATC 8 cut(s) 456, 483, 489, 501, 864, 962, 1137, 1142
DpnII GATC 8 cut(s) 454, 481, 487, 499, 862, 960, 1135, 1140
Eam1104I CTCTTC 1 cut(s) 887
EarI CTCTTC 1 cut(s) 887
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 2 cut(s) 405, 786
Eco47I GGWCC 2 cut(s) 138, 793
Eco57I CTGAAG 1 cut(s) 1057
EcoO109I RGGNCCY 2 cut(s) 402, 783
EcoRII CCWGG 1 cut(s) 1016
EcoT14I CCWWGG 1 cut(s) 163
EcoT38I GRGCYC 2 cut(s) 405, 786
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 7 cut(s) 337, 442, 455, 488, 800, 1000, 1123
FaqI GGGAC 4 cut(s) 4, 450, 521, 806
FatI CATG 7 cut(s) 333, 438, 451, 484, 796, 996, 1119
FauI CCCGC 1 cut(s) 546
FbaI TGATCA 3 cut(s) 454, 481, 487
Fnu4HI GCNGC 8 cut(s) 110, 201, 261, 369, 652, 763, 956, 994
FokI GGATG 2 cut(s) 165, 369
FriOI GRGCYC 2 cut(s) 405, 786
Fsp4HI GCNGC 8 cut(s) 110, 201, 261, 369, 652, 763, 956, 994
FspBI CTAG 3 cut(s) 612, 737, 803
GlaI GCGC 2 cut(s) 259, 1023
GluI GCNGC 8 cut(s) 110, 201, 261, 369, 652, 763, 956, 994
GsuI CTGGAG 1 cut(s) 1000
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 3 cut(s) 403, 784, 1083
HapII CCGG 2 cut(s) 79, 243
HhaI GCGC 2 cut(s) 260, 1024
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 7 cut(s) 337, 442, 455, 488, 800, 1000, 1123
Hin6I GCGC 2 cut(s) 258, 1022
HinP1I GCGC 2 cut(s) 258, 1022
HincII GTYRAC 1 cut(s) 917
HindII GTYRAC 1 cut(s) 917
HindIII AAGCTT 2 cut(s) 820, 968
HinfI GANTC 2 cut(s) 768, 985
HpaII CCGG 2 cut(s) 79, 243
HphI GGTGA 2 cut(s) 371, 524
Hpy166II GTNNAC 4 cut(s) 208, 643, 712, 917
Hpy188I TCNGA 7 cut(s) 123, 145, 303, 867, 928, 990, 1140
Hpy188III TCNNGA 8 cut(s) 172, 485, 494, 503, 691, 1057, 1075, 1167
Hpy8I GTNNAC 4 cut(s) 208, 643, 712, 917
Hpy99I CGWCG 3 cut(s) 19, 319, 500
HpyAV CCTTC 6 cut(s) 52, 124, 221, 739, 865, 938
HpyCH4III ACNGT 5 cut(s) 413, 509, 626, 1029, 1064
HpyCH4IV ACGT 4 cut(s) 17, 317, 645, 1129
HpyCH4V TGCA 3 cut(s) 208, 725, 955
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 771
HpyF3I CTNAG 5 cut(s) 289, 323, 866, 903, 989
HpySE526I ACGT 4 cut(s) 17, 317, 645, 1129
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 7 cut(s) 337, 442, 455, 488, 800, 1000, 1123
HspAI GCGC 2 cut(s) 258, 1022
Ksp22I TGATCA 3 cut(s) 454, 481, 487
KspI CCGCGG 1 cut(s) 766
Kzo9I GATC 8 cut(s) 454, 481, 487, 499, 862, 960, 1135, 1140
LmnI GCTCC 2 cut(s) 693, 874
Lsp1109I GCAGC 5 cut(s) 96, 212, 355, 967, 1005
LweI GCATC 3 cut(s) 79, 355, 505
MaeI CTAG 3 cut(s) 612, 737, 803
MaeII ACGT 4 cut(s) 17, 317, 645, 1129
MaeIII GTNAC 3 cut(s) 469, 503, 601
MalI GATC 8 cut(s) 456, 483, 489, 501, 864, 962, 1137, 1142
MboI GATC 8 cut(s) 454, 481, 487, 499, 862, 960, 1135, 1140
MboII GAAGA 8 cut(s) 74, 80, 110, 158, 752, 904, 1063, 1099
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 4 cut(s) 210, 331, 405, 786
MluCI AATT 3 cut(s) 84, 529, 635
MlyI GAGTC 1 cut(s) 777
MmeI TCCRAC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 1103
MseI TTAA 4 cut(s) 194, 702, 851, 1038
MspA1I CMGCKG 2 cut(s) 203, 765
MspI CCGG 2 cut(s) 79, 243
MspR9I CCNGG 1 cut(s) 1018
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 1018
MvnI CGCG 1 cut(s) 765
MwoI GCNNNNNNNGC 2 cut(s) 197, 771
NdeII GATC 8 cut(s) 454, 481, 487, 499, 862, 960, 1135, 1140
NlaIII CATG 7 cut(s) 337, 442, 455, 488, 800, 1000, 1123
NlaIV GGNNCC 5 cut(s) 403, 404, 784, 794, 876
NmuCI GTSAC 2 cut(s) 503, 601
NspI RCATGY 1 cut(s) 442
PagI TCATGA 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 582
PctI GAATGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 1103
PfeI GAWTC 1 cut(s) 985
PkrI GCNGC 8 cut(s) 111, 202, 262, 370, 653, 764, 957, 995
Ple19I CGATCG 1 cut(s) 502
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
Psp6I CCWGG 1 cut(s) 1016
PspGI CCWGG 1 cut(s) 1016
PspN4I GGNNCC 5 cut(s) 403, 404, 784, 794, 876
PspOMI GGGCCC 2 cut(s) 401, 782
PspPI GGNCC 6 cut(s) 138, 401, 402, 782, 783, 793
PsuI RGATCY 1 cut(s) 862
PvuI CGATCG 1 cut(s) 502
RsaI GTAC 4 cut(s) 161, 313, 619, 1031
RsaNI GTAC 4 cut(s) 160, 312, 618, 1030
SacII CCGCGG 1 cut(s) 766
SaqAI TTAA 4 cut(s) 194, 702, 851, 1038
SatI GCNGC 8 cut(s) 110, 201, 261, 369, 652, 763, 956, 994
Sau3AI GATC 8 cut(s) 454, 481, 487, 499, 862, 960, 1135, 1140
Sau96I GGNCC 6 cut(s) 138, 401, 402, 782, 783, 793
ScaI AGTACT 1 cut(s) 619
SchI GAGTC 1 cut(s) 777
ScrFI CCNGG 1 cut(s) 1018
SduI GDGCHC 4 cut(s) 210, 331, 405, 786
SfaNI GCATC 3 cut(s) 79, 355, 505
Sfr303I CCGCGG 1 cut(s) 766
SgrBI CCGCGG 1 cut(s) 766
SinI GGWCC 2 cut(s) 138, 793
Sse9I AATT 3 cut(s) 84, 529, 635
SsiI CCGC 6 cut(s) 203, 261, 539, 652, 763, 765
SspI AATATT 1 cut(s) 1048
SspMI CTAG 3 cut(s) 612, 737, 803
StyD4I CCNGG 1 cut(s) 1016
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 5 cut(s) 413, 509, 626, 1029, 1064
TaiI ACGT 4 cut(s) 20, 320, 648, 1132
TaqI TCGA 2 cut(s) 14, 1056
TasI AATT 3 cut(s) 84, 529, 635
TatI WGTACW 1 cut(s) 617
TauI GCSGC 3 cut(s) 263, 654, 765
TfiI GAWTC 1 cut(s) 985
Tru1I TTAA 4 cut(s) 194, 702, 851, 1038
Tru9I TTAA 4 cut(s) 194, 702, 851, 1038
TscAI CASTG 3 cut(s) 1069, 1117, 1165
TseFI GTSAC 2 cut(s) 503, 601
TseI GCWGC 5 cut(s) 109, 200, 368, 955, 993
Tsp45I GTSAC 2 cut(s) 503, 601
TspDTI ATGAA 1 cut(s) 661
TspRI CASTG 3 cut(s) 1069, 1117, 1165
VneI GTGCAC 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 138, 793
XapI RAATTY 1 cut(s) 635
XceI RCATGY 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 1103
XspI CTAG 3 cut(s) 612, 737, 803
ZraI GACGTC 1 cut(s) 18
ZrmI AGTACT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.