Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013998

Physical Location & Seq

Genomic Coordinates Forward (+)

19635200 .. 19636015

Gene Structure 816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTTGCAGGGTTGGGATTGGACTCCATTTGTAGCAGTGCACTTGTTTCAGCTTACTCAAGACTCAGCCTTGTTGATGAAGCAAGCAGGGTGTTTAATGGGATTCGACAGCCGGATTTGGTTTTAAGGAATTTGATGATTTCGGGTTATGGAAGTGGCGGGTTTTGGGATAAAGGTTTGCAGCTGTTTAGTGAGATGAGAAGCATGGAGATGGTGCCGGATGGATACACAATTGTTGGATTGCTTTCGGGTTTAGCGGATTCGAGCTTGATAAGTATTGGAGAAGGACTACATGGTCTTTGTTTGAAATGGAATTTAGATTCTAATGCTCATGTGAGCAGTGTACTTGTGAGCATGTATTCGAGATGTATGTCTATGAATTCTGCACATAGAGTTTTTAGTGGTTTGTTCGAGCCAGATTTAGTTACATGGTCTGCTTTGATCACTGGGTTTTCGCAGTCGGGAGATTTTGACAAGGCATTGTTCTTTTTCAAGAATTTGAACATGGAAGGTAAGAAGCCGGATTCGGTTTTGATTGCCAGTGTGTTGGCTGCTGCTGCTCAGATGGCGCATGTAGGGCCTGGTTGTGAGATACATGCTTATGTTCTTCGACATGGAATCGAATCGGATGTCATGATTTCCTCTGCACTTATAGCCATGTATTCAAAGTGCGGCTTCTTGGGGATGGGTACTCGCGTTTTTGAGATCATGCCAGAGAAGAATATTGTTTCGTACAATTCTTTAATATTGGGTCTTGGTTTGCATGGACTTGCCTCCGAGGCCTTTAGAATGTTTGATGAGATACTCGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

272

Amino Acids

29.22

Weight (kDa)

5.45

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	38 - 86	4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64310
fragaria_vesca	FvH4_5g21730
malus_domestica	MD06G1168400.v1.1 MD06G1168500.v1.1 MD06G1168800.v1.1 MD06G1168900.v1.1
pyrus_communis	pycom06g15010 pycom06g15040
rosa_chinensis	RchiOBHm_Chr7g0192851
rosa_laevigata	RLG00000004320
rosa_roxburghii	Rroxscaffold_3G00262620
rosa_rugosa	Rorug07G0005100
rosa_samantha	Rh7AG130700 Rh7BG131600 Rh7CG134900 Rh7DG132700
rosa_wichuraiana	Rw7G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	214
AccII	CGCG	1 cut(s)	696
AciI	CCGC	3 cut(s)	159, 257, 672
AcsI	RAATTY	4 cut(s)	130, 313, 379, 496
AfaI	GTAC	3 cut(s)	345, 691, 734
AgsI	TTSAA	4 cut(s)	307, 493, 502, 666
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	3 cut(s)	53, 184, 267
AluI	AGCT	3 cut(s)	53, 184, 267
Alw21I	GWGCWC	1 cut(s)	43
Alw44I	GTGCAC	1 cut(s)	39
AoxI	GGCC	2 cut(s)	578, 780
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	4 cut(s)	181, 551, 554, 557
ApoI	RAATTY	4 cut(s)	130, 313, 379, 496
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	43
BaeI	ACNNNNGTAYC	2 cut(s)	681, 714
BanI	GGYRCC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	4 cut(s)	193, 538, 541, 544
BccI	CCATC	4 cut(s)	205, 215, 559, 679
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	218
BglI	GCCNNNNNGGC	1 cut(s)	779
BisI	GCNGC	5 cut(s)	182, 552, 555, 558, 673
BlsI	GCNGC	5 cut(s)	183, 553, 556, 559, 674
Bme1390I	CCNGG	1 cut(s)	582
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	582
BmrI	ACTGGG	1 cut(s)	456
BmuI	ACTGGG	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	777
Bse1I	ACTGG	2 cut(s)	451, 540
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	1 cut(s)	777
BseGI	GGATG	3 cut(s)	226, 634, 690
BseMII	CTCAG	2 cut(s)	79, 575
BseNI	ACTGG	2 cut(s)	451, 540
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	4 cut(s)	193, 538, 541, 544
BsgI	GTGCAG	2 cut(s)	369, 630
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	2 cut(s)	580, 782
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	113, 218, 521
BsnI	GGCC	2 cut(s)	580, 782
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	441, 705
BspACI	CCGC	3 cut(s)	159, 257, 672
BspANI	GGCC	2 cut(s)	580, 782
BspCNI	CTCAG	2 cut(s)	78, 574
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	451, 540
BssECI	CCNNGG	1 cut(s)	777
BssMI	GATC	2 cut(s)	441, 705
Bst2UI	CCWGG	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	65, 561
BstF5I	GGATG	3 cut(s)	226, 634, 690
BstFNI	CGCG	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	2 cut(s)	444, 708
BstMBI	GATC	2 cut(s)	441, 705
BstMWI	GCNNNNNNNGC	5 cut(s)	557, 566, 577, 653, 779
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	3 cut(s)	358, 575, 599
BstSCI	CCNGG	1 cut(s)	580
BstSLI	GKGCMC	1 cut(s)	43
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	4 cut(s)	193, 538, 541, 544
BstXI	CCANNNNNNTGG	1 cut(s)	547
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	580, 782
BtsCI	GGATG	3 cut(s)	226, 634, 690
BtsI	GCAGTG	2 cut(s)	43, 346
BtsIMutI	CAGTG	4 cut(s)	43, 346, 444, 547
Cac8I	GCNNGC	1 cut(s)	85
CciI	TCATGA	1 cut(s)	633
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	344, 690, 733
CviQI	GTAC	3 cut(s)	344, 690, 733
DdeI	CTNAG	2 cut(s)	65, 561
DpnI	GATC	2 cut(s)	443, 707
DpnII	GATC	2 cut(s)	441, 705
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	782
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	580
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	182, 552, 555, 558, 673
FokI	GGATG	3 cut(s)	233, 641, 697
Fsp4HI	GCNGC	5 cut(s)	182, 552, 555, 558, 673
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	5 cut(s)	182, 552, 555, 558, 673
HaeIII	GGCC	2 cut(s)	580, 782
HapII	CCGG	3 cut(s)	113, 218, 521
HhaI	GCGC	1 cut(s)	571
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HinfI	GANTC	8 cut(s)	23, 63, 103, 260, 320, 524, 618, 623
HpaII	CCGG	3 cut(s)	113, 218, 521
Hpy166II	GTNNAC	2 cut(s)	41, 344
Hpy188I	TCNGA	4 cut(s)	564, 628, 778, 809
Hpy188III	TCNNGA	5 cut(s)	60, 363, 462, 493, 634
Hpy8I	GTNNAC	2 cut(s)	41, 344
HpyAV	CCTTC	2 cut(s)	278, 503
HpyCH4V	TGCA	6 cut(s)	8, 41, 181, 386, 647, 763
HpyF10VI	GCNNNNNNNGC	5 cut(s)	557, 566, 577, 653, 779
HpyF3I	CTNAG	2 cut(s)	65, 561
HspAI	GCGC	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	2 cut(s)	441, 705
Lsp1109I	GCAGC	4 cut(s)	193, 538, 541, 544
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	443, 707
MboI	GATC	2 cut(s)	441, 705
MboII	GAAGA	2 cut(s)	599, 730
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	6 cut(s)	130, 231, 313, 379, 496, 736
MlyI	GAGTC	2 cut(s)	17, 57
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	3 cut(s)	652, 772, 784
MseI	TTAA	3 cut(s)	96, 125, 743
MslI	CAYNNNNRTG	2 cut(s)	209, 600
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	3 cut(s)	113, 218, 521
MspR9I	CCNGG	1 cut(s)	582
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	582
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	5 cut(s)	557, 566, 577, 653, 779
NdeII	GATC	2 cut(s)	441, 705
NlaIV	GGNNCC	1 cut(s)	216
NspI	RCATGY	3 cut(s)	358, 575, 599
PagI	TCATGA	1 cut(s)	633
PceI	AGGCCT	1 cut(s)	782
PfeI	GAWTC	6 cut(s)	103, 260, 320, 524, 618, 623
PkrI	GCNGC	5 cut(s)	183, 553, 556, 559, 674
PleI	GAGTC	2 cut(s)	17, 57
PpsI	GAGTC	2 cut(s)	17, 57
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	3 cut(s)	345, 691, 734
RsaNI	GTAC	3 cut(s)	344, 690, 733
RseI	CAYNNNNRTG	2 cut(s)	209, 600
SaqAI	TTAA	3 cut(s)	96, 125, 743
SatI	GCNGC	5 cut(s)	182, 552, 555, 558, 673
Sau3AI	GATC	2 cut(s)	441, 705
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	2 cut(s)	17, 57
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	5 cut(s)	55, 178, 186, 269, 514
SmiMI	CAYNNNNRTG	2 cut(s)	209, 600
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	6 cut(s)	130, 231, 313, 379, 496, 736
SseBI	AGGCCT	1 cut(s)	782
SsiI	CCGC	3 cut(s)	159, 257, 672
SspI	AATATT	2 cut(s)	724, 747
StuI	AGGCCT	1 cut(s)	782
StyD4I	CCNGG	1 cut(s)	580
TaqI	TCGA	6 cut(s)	106, 263, 362, 411, 610, 621
TasI	AATT	6 cut(s)	130, 231, 313, 379, 496, 736
TatI	WGTACW	1 cut(s)	343
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	6 cut(s)	103, 260, 320, 524, 618, 623
Tru1I	TTAA	3 cut(s)	96, 125, 743
Tru9I	TTAA	3 cut(s)	96, 125, 743
TscAI	CASTG	4 cut(s)	43, 346, 451, 547
TseI	GCWGC	4 cut(s)	181, 551, 554, 557
TspDTI	ATGAA	2 cut(s)	93, 392
TspRI	CASTG	4 cut(s)	43, 346, 451, 547
VneI	GTGCAC	1 cut(s)	39
XapI	RAATTY	4 cut(s)	130, 313, 379, 496
XceI	RCATGY	3 cut(s)	358, 575, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.