Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007527

Physical Location & Seq

Genomic Coordinates Forward (+)

3219160 .. 3220091

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTGTGCAAGATACTATAATGTTTCGCTGACAACAAACGATAACCAGAGCCATTTAGCCACTACAAATGGCTCACCAAGAGATTCTGTTGGCCATGGAACTCACACTACATCCATAGCAGCCGGTGTGCAAGTTCCCAATGCTAGTTATTATGGCTTAGCACAAGGTATAGCAAGGGGAGGCTCACCGTCAGCTAGAATTGCGTGTTACAAGGCATGCTCTGATGTTGGTTGCTCTGGTGCCACCATATTGAAGGCTATTGATGATGCAGTTAGAGATGGAGTAGACGTAATATCTATTTCCATTGGGATGAGTTCACTGTTTCAGCCTGACTACTTAAATGACCCCATAGCCATCGGAGCATTTCATGCTGAGCAAATGGGAGTGATGGTAATTTGCTCTGCAGGAAATGATGGTCCCGATCCTTACACTATTGTAAACACAGCACCGTGGATCTTCACCATTGCAGCTTCTAACATTGATAGGGATTTCCAATCTAATATCGTTCTTGGAAATGGGAGAACATTCACAGGTTCAGCCATCAATTTCTCCAATCTCACTCATGCGAAGACATATCCTCTTGTATTTGGAAAAGATGCCGCTGGCATTTACACGCCTGTATCTGAAGCAAGAAATTGCTATCCAGGATCCCATGATTGGATCAAAAGAAAGTGGTTGGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

229

Amino Acids

24.15

Weight (kDa)

6.57

Isoelectric Point (pI)

26.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04630 FvH4_7g04630 FvH4_7g04630 FvH4_7g04630 FvH4_7g04630 FvH4_7g04630
malus_domestica	MD02G1268900.v1.1 MD07G1085300.v1.1
prunus_persica	Prupe.2G051800_v2.0.a1 Prupe.2G051800_v2.0.a1
pyrus_communis	pycom02g23060 pycom07g03800 pycom07g03810
rosa_chinensis	RchiOBHm_Chr1g0330061
rosa_laevigata	RLG00000029837
rosa_multiflora	Rmu_co8353995.1_g000001 Rmu_sc0004673.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320400
rosa_rugosa	Rorug01G0085500 Rorug01G0085600
rosa_samantha	Rh1AG104100 Rh1BG082500 Rh1CG099000 Rh1DG106200
rosa_wichuraiana	Rw0G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	5 cut(s)	416, 461, 642, 655, 668
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	645
AfiI	CCNNNNNNNGG	1 cut(s)	657
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	2 cut(s)	194, 470
AluI	AGCT	2 cut(s)	194, 470
AlwI	GGATC	5 cut(s)	416, 461, 642, 655, 668
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	119, 467
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	66, 177, 451
AvaII	GGWCC	1 cut(s)	416
BaeI	ACNNNNGTAYC	2 cut(s)	603, 636
BalI	TGGCCA	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	131, 479
BccI	CCATC	5 cut(s)	272, 362, 382, 407, 548
BciT130I	CCWGG	1 cut(s)	645
BfaI	CTAG	2 cut(s)	144, 195
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	3 cut(s)	120, 468, 600
BlpI	GCTNAGC	2 cut(s)	157, 372
BlsI	GCNGC	3 cut(s)	121, 469, 601
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	3 cut(s)	241, 418, 649
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	2 cut(s)	256, 586
BpiI	GAAGAC	1 cut(s)	575
Bpu1102I	GCTNAGC	2 cut(s)	157, 372
BsaJI	CCNNGG	2 cut(s)	94, 449
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	657
Bse118I	RCCGGY	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	94, 449
BseGI	GGATG	2 cut(s)	110, 315
BseLI	CCNNNNNNNGG	1 cut(s)	657
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	131, 479
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	657
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	421, 453, 647, 660
Bsp1720I	GCTNAGC	2 cut(s)	157, 372
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	241, 418, 649
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	5 cut(s)	416, 461, 642, 655, 668
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	94, 449
BssMI	GATC	4 cut(s)	421, 453, 647, 660
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	3 cut(s)	189, 321, 450
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	217, 604
BstDEI	CTNAG	2 cut(s)	157, 372
BstDSI	CCRYGG	2 cut(s)	94, 449
BstF5I	GGATG	2 cut(s)	110, 315
BstKTI	GATC	4 cut(s)	424, 456, 650, 663
BstMBI	GATC	4 cut(s)	421, 453, 647, 660
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 359, 368
BstNI	CCWGG	1 cut(s)	645
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	643
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	131, 479
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	2 cut(s)	453, 647
BstYI	RGATCY	2 cut(s)	453, 647
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	2 cut(s)	94, 449
BtsCI	GGATG	2 cut(s)	110, 315
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	217, 604
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	416
CviAII	CATG	5 cut(s)	95, 216, 368, 563, 653
DdeI	CTNAG	2 cut(s)	157, 372
DpnI	GATC	4 cut(s)	423, 455, 649, 662
DpnII	GATC	4 cut(s)	421, 453, 647, 660
EaeI	YGGCCR	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	5 cut(s)	98, 219, 371, 566, 656
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	5 cut(s)	94, 215, 367, 562, 652
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	120, 468, 600
FokI	GGATG	2 cut(s)	97, 322
Fsp4HI	GCNGC	3 cut(s)	120, 468, 600
FspBI	CTAG	2 cut(s)	144, 195
GluI	GCNGC	3 cut(s)	120, 468, 600
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	5 cut(s)	98, 219, 371, 566, 656
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	3 cut(s)	66, 177, 451
Hpy166II	GTNNAC	3 cut(s)	286, 317, 439
Hpy188I	TCNGA	3 cut(s)	223, 359, 625
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	3 cut(s)	286, 317, 439
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	3 cut(s)	189, 321, 450
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	5 cut(s)	8, 130, 269, 404, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 359, 368
HpyF3I	CTNAG	2 cut(s)	157, 372
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	98, 219, 371, 566, 656
Kzo9I	GATC	4 cut(s)	421, 453, 647, 660
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	2 cut(s)	131, 479
LweI	GCATC	2 cut(s)	256, 586
MaeI	CTAG	2 cut(s)	144, 195
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	4 cut(s)	423, 455, 649, 662
MboI	GATC	4 cut(s)	421, 453, 647, 660
MboII	GAAGA	2 cut(s)	448, 580
MflI	RGATCY	2 cut(s)	453, 647
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	4 cut(s)	198, 393, 544, 634
MluNI	TGGCCA	1 cut(s)	93
MnlI	CCTC	2 cut(s)	173, 588
Mox20I	TGGCCA	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	3 cut(s)	200, 359, 368
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	421, 453, 647, 660
NlaIII	CATG	5 cut(s)	98, 219, 371, 566, 656
NlaIV	GGNNCC	3 cut(s)	241, 418, 649
NspI	RCATGY	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	83
PfoI	TCCNGGA	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	121, 469, 601
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	3 cut(s)	241, 418, 649
PspPI	GGNCC	1 cut(s)	416
PsrI	GAACNNNNNNTAC	2 cut(s)	91, 123
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	453, 647
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	3 cut(s)	120, 468, 600
Sau3AI	GATC	4 cut(s)	421, 453, 647, 660
Sau96I	GGNCC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	645
SetI	ASST	5 cut(s)	169, 196, 291, 472, 535
SfaNI	GCATC	2 cut(s)	256, 586
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	4 cut(s)	198, 393, 544, 634
SsiI	CCGC	1 cut(s)	600
SspMI	CTAG	2 cut(s)	144, 195
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	3 cut(s)	189, 321, 450
TaiI	ACGT	1 cut(s)	291
TasI	AATT	4 cut(s)	198, 393, 544, 634
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	2 cut(s)	119, 467
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	416
XceI	RCATGY	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	2 cut(s)	144, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.