Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004673.1

Orthogroup ID

OG0007527

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2291

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004673.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 997 bp

gttgattttgatcgatgaagatgagaaaagtgtgccttttgattcaggcgttttcccatttgcagaagttggagatattgctgggtttcagattctcaattacattaactctaccaaaaaccctaaagcgacaatcctcccaacagttgacattcacaggtatagacctgcaccaacagtcgcgtatttttcatcgagaggtcctgcacagcttaccgaaaatgttctcaagcctgacataatggctccgggagtggcaattttagctgccatcagtcccgacaataaatcagggagtatcccccatggagaaaagccatccaagttttccataaagtctggaacatcaatggcttgcccacatgtaacaggcgctgctgcattcatcaagtcagtgcatcgtggatggacatcttccatgatcaaatcagcacttatgacaacagcaaccatgtacaacaacatgaaaaagcctttgataaacagcactaacaactatgcaaatccacatgaggtgggggttggagaaataaacccaatcaaggctcttaacccaggtctagtctttgaaaccataacagaaaattatcttgagttcctctgttattatggctacaaggagaagaatataagatcaatgtcaaacacaaagttcaactgcccgaaaatctccactgaagaactcatctctaatatcaactacccatcaatctctgttagtaaactgaaccggcacaaacctgtaatgacaattaaaagaactgcaaccaatgttggagccccgaattctacatatattgcaaaggtgaatgctcctgtaggcttagtagtcaaggttctaccagagaggatagtttttgctgaaggtgtgaggaaggtgtctttccaagtctcatttaatggcaaggaggctcctactggctacagttttgggtcaataacatggtttgatggtcgacattcagttaatactgtgtttggtgtgaatgtagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

331

Amino Acids

36.11

Weight (kDa)

9.3

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04630 FvH4_7g04630 FvH4_7g04630 FvH4_7g04630 FvH4_7g04630 FvH4_7g04630
malus_domestica	MD02G1268900.v1.1 MD07G1085300.v1.1
prunus_persica	Prupe.2G051800_v2.0.a1 Prupe.2G051800_v2.0.a1
pyrus_communis	pycom02g23060 pycom07g03800 pycom07g03810
rosa_chinensis	RchiOBHm_Chr1g0330061
rosa_laevigata	RLG00000029837
rosa_multiflora	Rmu_co8353995.1_g000001 Rmu_sc0004673.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320400
rosa_rugosa	Rorug01G0085500 Rorug01G0085600
rosa_samantha	Rh1AG104100 Rh1BG082500 Rh1CG099000 Rh1DG106200
rosa_wichuraiana	Rw0G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	956
AccII	CGCG	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	785
AcuI	CTGAAG	2 cut(s)	697, 883
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	570, 656
AjnI	CCWGG	1 cut(s)	554
AluBI	AGCT	2 cut(s)	212, 267
AluI	AGCT	2 cut(s)	212, 267
Alw26I	GTCTC	1 cut(s)	896
AlwNI	CAGNNNCTG	1 cut(s)	375
ApeKI	GCWGC	3 cut(s)	267, 375, 378
ApoI	RAATTY	1 cut(s)	785
Asp700I	GAANNNNTTC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	818
AvaII	GGWCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	782
BbvI	GCAGC	3 cut(s)	254, 362, 365
BccI	CCATC	5 cut(s)	279, 326, 400, 713, 945
BciT130I	CCWGG	1 cut(s)	556
BciVI	GTATCC	1 cut(s)	309
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	896
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	817, 923
BfoI	RGCGCY	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	309
BisI	GCNGC	3 cut(s)	268, 376, 379
BlsI	GCNGC	3 cut(s)	269, 377, 380
Bme1390I	CCNGG	2 cut(s)	250, 556
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	3 cut(s)	247, 779, 913
BmrFI	CCNGG	2 cut(s)	250, 556
BmsI	GCATC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	213, 612
BpuMI	CCSGG	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	13
BsaBI	GATNNNNATC	2 cut(s)	9, 410
BsaJI	CCNNGG	2 cut(s)	305, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	1 cut(s)	923
Bse8I	GATNNNNATC	2 cut(s)	9, 410
BseBI	CCWGG	1 cut(s)	556
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	305, 554
BseGI	GGATG	2 cut(s)	318, 411
BseJI	GATNNNNATC	2 cut(s)	9, 410
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseNI	ACTGG	1 cut(s)	923
BseXI	GCAGC	3 cut(s)	254, 362, 365
BseYI	CCCAGC	1 cut(s)	81
BsgI	GTGCAG	2 cut(s)	154, 190
Bsh1236I	CGCG	1 cut(s)	183
BshVI	ATCGAT	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	249, 731
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	2 cut(s)	381, 815
Bsp1286I	GDGCHC	1 cut(s)	782
Bsp1407I	TGTACA	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	10, 421, 633
Bsp19I	CCATGG	1 cut(s)	305
BspDI	ATCGAT	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	247, 779, 913
BspMI	ACCTGC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	730
BsrGI	TGTACA	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	923
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	2 cut(s)	305, 554
BssMI	GATC	3 cut(s)	10, 421, 633
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	4 cut(s)	146, 179, 927, 974
BstAUI	TGTACA	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	824
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	318, 411
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	3 cut(s)	13, 424, 636
BstMAI	GTCTC	1 cut(s)	896
BstMBI	GATC	3 cut(s)	10, 421, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	556
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	248, 554
BstSFI	CTRYAG	2 cut(s)	817, 923
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	254, 362, 365
Bsu15I	ATCGAT	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	309
BsuTUI	ATCGAT	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	318, 411
BtsIMutI	CAGTG	2 cut(s)	400, 673
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	375
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	7 cut(s)	306, 363, 419, 452, 464, 510, 943
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	1 cut(s)	824
DpnI	GATC	3 cut(s)	12, 423, 635
DpnII	GATC	3 cut(s)	10, 421, 633
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	201
Eco57I	CTGAAG	2 cut(s)	697, 883
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	785
EcoRII	CCWGG	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	782
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	7 cut(s)	309, 366, 422, 455, 467, 513, 946
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	7 cut(s)	305, 362, 418, 451, 463, 509, 942
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	956
Fnu4HI	GCNGC	3 cut(s)	268, 376, 379
FokI	GGATG	2 cut(s)	305, 418
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	3 cut(s)	268, 376, 379
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	3 cut(s)	268, 376, 379
GsaI	CCCAGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	376
HapII	CCGG	2 cut(s)	249, 731
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	7 cut(s)	309, 366, 422, 455, 467, 513, 946
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HincII	GTYRAC	2 cut(s)	149, 957
HindII	GTYRAC	2 cut(s)	149, 957
HinfI	GANTC	2 cut(s)	42, 92
HpaII	CCGG	2 cut(s)	249, 731
HphI	GGTGA	1 cut(s)	818
Hpy166II	GTNNAC	3 cut(s)	149, 723, 957
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	4 cut(s)	196, 279, 340, 591
Hpy8I	GTNNAC	3 cut(s)	149, 723, 957
HpyAV	CCTTC	2 cut(s)	858, 869
HpyCH4III	ACNGT	4 cut(s)	146, 179, 927, 974
HpyCH4V	TGCA	8 cut(s)	63, 171, 207, 381, 398, 501, 765, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	824
Hsp92II	CATG	7 cut(s)	309, 366, 422, 455, 467, 513, 946
HspAI	GCGC	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	10, 421, 633
LmnI	GCTCC	4 cut(s)	251, 777, 818, 917
Lsp1109I	GCAGC	3 cut(s)	254, 362, 365
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	12, 423, 635
MboI	GATC	3 cut(s)	10, 421, 633
MboII	GAAGA	4 cut(s)	30, 406, 635, 690
MhlI	GDGCHC	1 cut(s)	782
MluCI	AATT	5 cut(s)	98, 259, 584, 751, 785
MmeI	TCCRAC	3 cut(s)	50, 503, 755
MnlI	CCTC	7 cut(s)	147, 192, 506, 609, 841, 865, 902
MroXI	GAANNNNTTC	1 cut(s)	223
MseI	TTAA	5 cut(s)	106, 550, 754, 898, 967
MspI	CCGG	2 cut(s)	249, 731
MspR9I	CCNGG	2 cut(s)	250, 556
Mva1269I	GAATGC	2 cut(s)	381, 815
MvaI	CCWGG	1 cut(s)	556
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	3 cut(s)	10, 421, 633
NlaIII	CATG	7 cut(s)	309, 366, 422, 455, 467, 513, 946
NlaIV	GGNNCC	3 cut(s)	247, 779, 913
NspI	RCATGY	1 cut(s)	366
PciI	ACATGT	1 cut(s)	362
PctI	GAATGC	2 cut(s)	381, 815
PdmI	GAANNNNTTC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	42, 92
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	269, 377, 380
PpuMI	RGGWCCY	1 cut(s)	201
PscI	ACATGT	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	3 cut(s)	247, 779, 913
PspPI	GGNCC	1 cut(s)	201
PspPPI	RGGWCCY	1 cut(s)	201
PsrI	GAACNNNNNNTAC	2 cut(s)	820, 852
PstNI	CAGNNNCTG	1 cut(s)	375
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SalI	GTCGAC	1 cut(s)	955
SaqAI	TTAA	5 cut(s)	106, 550, 754, 898, 967
SatI	GCNGC	3 cut(s)	268, 376, 379
Sau3AI	GATC	3 cut(s)	10, 421, 633
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	2 cut(s)	250, 556
SduI	GDGCHC	1 cut(s)	782
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	2 cut(s)	817, 923
SinI	GGWCC	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	228, 591
SmoI	CTYRAG	2 cut(s)	228, 591
Sse9I	AATT	5 cut(s)	98, 259, 584, 751, 785
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	248, 554
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	4 cut(s)	146, 179, 927, 974
TaqI	TCGA	3 cut(s)	13, 195, 956
TasI	AATT	5 cut(s)	98, 259, 584, 751, 785
TatI	WGTACW	1 cut(s)	454
TfiI	GAWTC	2 cut(s)	42, 92
Tru1I	TTAA	5 cut(s)	106, 550, 754, 898, 967
Tru9I	TTAA	5 cut(s)	106, 550, 754, 898, 967
TscAI	CASTG	2 cut(s)	400, 680
TseI	GCWGC	3 cut(s)	267, 375, 378
TspDTI	ATGAA	4 cut(s)	31, 181, 374, 480
TspRI	CASTG	2 cut(s)	400, 680
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	1 cut(s)	785
XceI	RCATGY	1 cut(s)	366
XmiI	GTMKAC	1 cut(s)	956
XmnI	GAANNNNTTC	1 cut(s)	223
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.