Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007527

Physical Location & Seq

Genomic Coordinates Forward (+)

3220961 .. 3222090

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCCAGGTCGATCTCATTGTCACAAATCAGTCAGCACCCACAAAAAATGTGCTTACCCGTACATTTACCAAGTTTCGGTAATGTACCAGTTGTTTGCAAAACTAACTGTATTTACTTTTCGTGTTTCTTTATGTGCTATTCAGCCTGATATAATGGCTCCAGGAGTGGCCATTTTAGCTGCCATAGCTCCCAAGAATGAAAAAGGGGCAGTCCCAAATGGGAAAAAGCCATCAAAATTTTCCATAAAATCCGGGACATCAATGGCTTGTCCACACGTAACGGGGGCTGCTGCATTCATCAAGTCAGTGCATCGTCGATGGACTAGTTCCATGATCAAATCAGCCCTTATGACCACAGCAACCATTTACAACAACATGAAAAAGCCTTTGACAAACAGCTCTAACCACTTTGCAAATCCACACGAGGTGGGGGTCGGAGAAATAAACCCACTTAAAGCTCTTAACCCGGGACTAGTCTTCGAAACCACAACAGAAAACTATCTCGAATTCCTTTGCAATTACGGCTACCCAGAGAAGAACATAAGATTTATGTCAAACATAAAGTTCAACTGCCCAAAAATCTCCACTGAAGAACTCATCTCTAACATCAACTACCCCTCCATCTCCATTAGTAAGCTCAGCCGGCGCCAACCTGCAAAGGCTATTGAAAGAACCGTGACCAATGTTGGAGCCCGGAATTCTACGTACATTGCAAAGGTGCAGGCTCCGGTAGGATTAACAGTCAAGGTACTTCCGGAGAAGTTGGTTTTTTCTGAGGGTGTGAGGAGAGTGTCTTTCCAAGTGTCATTTTATGGCAAGAAGGCTACTAGCGGCTACAATTTTGGGTCCATTATATGGTTTAATGGTCAACATTCAGTTCGTACTGTGTTTAGTGTGAATGTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

303

Amino Acids

33.39

Weight (kDa)

9.91

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	46 - 139	3.8e-15	Subtilase family
fn3_6	PF17766	202 - 299	8.2e-25	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04630 FvH4_7g04630 FvH4_7g04630 FvH4_7g04630 FvH4_7g04630 FvH4_7g04630
malus_domestica	MD02G1268900.v1.1 MD07G1085300.v1.1
prunus_persica	Prupe.2G051800_v2.0.a1 Prupe.2G051800_v2.0.a1
pyrus_communis	pycom02g23060 pycom07g03800 pycom07g03810
rosa_chinensis	RchiOBHm_Chr1g0330061
rosa_laevigata	RLG00000029837
rosa_multiflora	Rmu_co8353995.1_g000001 Rmu_sc0004673.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320400
rosa_rugosa	Rorug01G0085500 Rorug01G0085600
rosa_samantha	Rh1AG104100 Rh1BG082500 Rh1CG099000 Rh1DG106200
rosa_wichuraiana	Rw0G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
AccB1I	GGYRCC	1 cut(s)	645
AccB7I	CCANNNNNTGG	1 cut(s)	855
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	1 cut(s)	831
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	3 cut(s)	236, 506, 697
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	646
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	5 cut(s)	62, 86, 707, 750, 883
AfiI	CCNNNNNNNGG	2 cut(s)	76, 855
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	568, 668
AhlI	ACTAGT	2 cut(s)	323, 472
AjnI	CCWGG	2 cut(s)	4, 160
AluBI	AGCT	5 cut(s)	179, 188, 399, 458, 637
AluI	AGCT	5 cut(s)	179, 188, 399, 458, 637
Ama87I	CYCGRG	1 cut(s)	466
Aor13HI	TCCGGA	1 cut(s)	754
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	179, 287, 290
ApoI	RAATTY	3 cut(s)	236, 506, 697
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	846
AsuC2I	CCSGG	4 cut(s)	253, 467, 468, 694
AsuII	TTCGAA	1 cut(s)	480
AvaI	CYCGRG	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	846
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	694
BauI	CACGAG	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	469
BbvI	GCAGC	3 cut(s)	166, 274, 277
BccI	CCATC	3 cut(s)	238, 312, 629
BceAI	ACGGC	1 cut(s)	538
BciT130I	CCWGG	2 cut(s)	6, 162
BclI	TGATCA	1 cut(s)	333
BcnI	CCSGG	4 cut(s)	253, 467, 468, 694
BcuI	ACTAGT	2 cut(s)	323, 472
BfaI	CTAG	3 cut(s)	324, 473, 828
BfoI	RGCGCY	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	4 cut(s)	180, 288, 291, 832
BlpI	GCTNAGC	1 cut(s)	638
BlsI	GCNGC	4 cut(s)	181, 289, 292, 833
Bme1390I	CCNGG	6 cut(s)	6, 162, 253, 467, 468, 694
Bme18I	GGWCC	1 cut(s)	846
BmeT110I	CYCGRG	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	846
BmiI	GGNNCC	5 cut(s)	159, 647, 691, 726, 847
BmrFI	CCNGG	6 cut(s)	6, 162, 253, 467, 468, 694
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	638
Bpu14I	TTCGAA	1 cut(s)	480
BpuMI	CCSGG	4 cut(s)	253, 467, 468, 694
BsaAI	YACGTR	2 cut(s)	277, 705
BsaHI	GRCGYC	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	2 cut(s)	727, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 855
Bse118I	RCCGGY	1 cut(s)	642
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	708
BseAI	TCCGGA	1 cut(s)	754
BseBI	CCWGG	2 cut(s)	6, 162
BseDI	CCNNGG	1 cut(s)	466
BseLI	CCNNNNNNNGG	2 cut(s)	76, 855
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	2 cut(s)	652, 765
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	799
BseXI	GCAGC	3 cut(s)	166, 274, 277
BsgI	GTGCAG	1 cut(s)	740
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	645
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	6 cut(s)	252, 467, 643, 694, 728, 755
BslFI	GGGAC	3 cut(s)	197, 268, 483
BslI	CCNNNNNNNGG	2 cut(s)	76, 855
BsmFI	GGGAC	3 cut(s)	197, 268, 483
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	466
Bsp119I	TTCGAA	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp13I	TCCGGA	1 cut(s)	754
Bsp143I	GATC	2 cut(s)	11, 333
Bsp1720I	GCTNAGC	1 cut(s)	638
BspACI	CCGC	1 cut(s)	831
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	651, 766
BspEI	TCCGGA	1 cut(s)	754
BspLI	GGNNCC	5 cut(s)	159, 647, 691, 726, 847
BspMI	ACCTGC	1 cut(s)	661
BspT104I	TTCGAA	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	2 cut(s)	11, 333
BssNI	GRCGYC	1 cut(s)	646
BssSI	CACGAG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	422
Bst2UI	CCWGG	2 cut(s)	6, 162
Bst4CI	ACNGT	4 cut(s)	109, 676, 742, 886
BstACI	GRCGYC	1 cut(s)	646
BstBAI	YACGTR	2 cut(s)	277, 705
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	644, 723
BstDEI	CTNAG	2 cut(s)	638, 774
BstH2I	RGCGCY	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	2 cut(s)	14, 336
BstMBI	GATC	2 cut(s)	11, 333
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 185, 522, 643
BstNI	CCWGG	2 cut(s)	6, 162
BstSCI	CCNGG	6 cut(s)	4, 160, 251, 465, 466, 692
BstSNI	TACGTA	1 cut(s)	705
BstV1I	GCAGC	3 cut(s)	166, 274, 277
BstV2I	GAAGAC	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	312, 585
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	2 cut(s)	644, 723
CfoI	GCGC	1 cut(s)	648
Cfr10I	RCCGGY	1 cut(s)	642
Cfr13I	GGNCC	1 cut(s)	846
Cfr9I	CCCGGG	1 cut(s)	466
Csp6I	GTAC	5 cut(s)	61, 85, 706, 749, 882
CviAII	CATG	2 cut(s)	331, 376
CviQI	GTAC	5 cut(s)	61, 85, 706, 749, 882
DdeI	CTNAG	2 cut(s)	638, 774
DinI	GGCGCC	1 cut(s)	647
DpnI	GATC	2 cut(s)	13, 335
DpnII	GATC	2 cut(s)	11, 333
DraIII	CACNNNGTG	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	168
Eco105I	TACGTA	1 cut(s)	705
Eco24I	GRGCYC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	846
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	466
EcoRI	GAATTC	2 cut(s)	506, 697
EcoRII	CCWGG	2 cut(s)	4, 160
EcoT38I	GRGCYC	1 cut(s)	694
EgeI	GGCGCC	1 cut(s)	647
EheI	GGCGCC	1 cut(s)	647
FaeI	CATG	2 cut(s)	334, 379
FaqI	GGGAC	3 cut(s)	197, 268, 483
FatI	CATG	2 cut(s)	330, 375
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	4 cut(s)	180, 288, 291, 832
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	4 cut(s)	180, 288, 291, 832
FspBI	CTAG	3 cut(s)	324, 473, 828
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	4 cut(s)	180, 288, 291, 832
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	649
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	6 cut(s)	252, 467, 643, 694, 728, 755
HhaI	GCGC	1 cut(s)	648
Hin1I	GRCGYC	1 cut(s)	646
Hin1II	CATG	2 cut(s)	334, 379
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HincII	GTYRAC	1 cut(s)	869
HindII	GTYRAC	1 cut(s)	869
HpaII	CCGG	6 cut(s)	252, 467, 643, 694, 728, 755
Hpy166II	GTNNAC	2 cut(s)	272, 869
Hpy188I	TCNGA	2 cut(s)	437, 775
Hpy188III	TCNNGA	2 cut(s)	503, 755
Hpy8I	GTNNAC	2 cut(s)	272, 869
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	814
HpyCH4III	ACNGT	4 cut(s)	109, 676, 742, 886
HpyCH4IV	ACGT	2 cut(s)	276, 704
HpyCH4V	TGCA	8 cut(s)	98, 293, 310, 413, 516, 656, 713, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 185, 522, 643
HpyF3I	CTNAG	2 cut(s)	638, 774
HpySE526I	ACGT	2 cut(s)	276, 704
Hsp92I	GRCGYC	1 cut(s)	646
Hsp92II	CATG	2 cut(s)	334, 379
HspAI	GCGC	1 cut(s)	646
KasI	GGCGCC	1 cut(s)	645
Kpn2I	TCCGGA	1 cut(s)	754
KroI	GCCGGC	1 cut(s)	642
KroNI	GCCGGC	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	11, 333
LmnI	GCTCC	4 cut(s)	163, 193, 689, 730
Lsp1109I	GCAGC	3 cut(s)	166, 274, 277
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	3 cut(s)	324, 473, 828
MaeII	ACGT	2 cut(s)	276, 704
MaeIII	GTNAC	3 cut(s)	20, 277, 676
MalI	GATC	2 cut(s)	13, 335
MboI	GATC	2 cut(s)	11, 333
MboII	GAAGA	3 cut(s)	469, 547, 602
MhlI	GDGCHC	1 cut(s)	694
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	5 cut(s)	236, 506, 517, 697, 838
MluNI	TGGCCA	1 cut(s)	170
Mly113I	GGCGCC	1 cut(s)	646
MmeI	TCCRAC	2 cut(s)	415, 667
MnlI	CCTC	4 cut(s)	418, 628, 769, 777
Mox20I	TGGCCA	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	754
MroNI	GCCGGC	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	4 cut(s)	453, 462, 737, 861
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	6 cut(s)	252, 467, 643, 694, 728, 755
MspR9I	CCNGG	6 cut(s)	6, 162, 253, 467, 468, 694
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	2 cut(s)	6, 162
MwoI	GCNNNNNNNGC	4 cut(s)	176, 185, 522, 643
NaeI	GCCGGC	1 cut(s)	644
NarI	GGCGCC	1 cut(s)	646
NciI	CCSGG	4 cut(s)	253, 467, 468, 694
NdeII	GATC	2 cut(s)	11, 333
NgoMIV	GCCGGC	1 cut(s)	642
NlaIII	CATG	2 cut(s)	334, 379
NlaIV	GGNNCC	5 cut(s)	159, 647, 691, 726, 847
NmuCI	GTSAC	2 cut(s)	20, 676
NspV	TTCGAA	1 cut(s)	480
PctI	GAATGC	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	644
PflMI	CCANNNNNTGG	1 cut(s)	855
PfoI	TCCNGGA	2 cut(s)	160, 251
PkrI	GCNGC	4 cut(s)	181, 289, 292, 833
PluTI	GGCGCC	1 cut(s)	649
Ppu21I	YACGTR	2 cut(s)	277, 705
Psp6I	CCWGG	2 cut(s)	4, 160
PspGI	CCWGG	2 cut(s)	4, 160
PspN4I	GGNNCC	5 cut(s)	159, 647, 691, 726, 847
PspPI	GGNCC	1 cut(s)	846
RsaI	GTAC	5 cut(s)	62, 86, 707, 750, 883
RsaNI	GTAC	5 cut(s)	61, 85, 706, 749, 882
SaqAI	TTAA	4 cut(s)	453, 462, 737, 861
SatI	GCNGC	4 cut(s)	180, 288, 291, 832
Sau3AI	GATC	2 cut(s)	11, 333
Sau96I	GGNCC	1 cut(s)	846
ScrFI	CCNGG	6 cut(s)	6, 162, 253, 467, 468, 694
SduI	GDGCHC	1 cut(s)	694
SfaNI	GCATC	1 cut(s)	319
SfoI	GGCGCC	1 cut(s)	647
SfuI	TTCGAA	1 cut(s)	480
SinI	GGWCC	1 cut(s)	846
SmaI	CCCGGG	1 cut(s)	468
SnaBI	TACGTA	1 cut(s)	705
SpeI	ACTAGT	2 cut(s)	323, 472
Sse9I	AATT	5 cut(s)	236, 506, 517, 697, 838
SsiI	CCGC	1 cut(s)	831
SspDI	GGCGCC	1 cut(s)	645
SspMI	CTAG	3 cut(s)	324, 473, 828
StyD4I	CCNGG	6 cut(s)	4, 160, 251, 465, 466, 692
TaaI	ACNGT	4 cut(s)	109, 676, 742, 886
TaiI	ACGT	2 cut(s)	279, 707
TaqI	TCGA	4 cut(s)	10, 316, 480, 504
TasI	AATT	5 cut(s)	236, 506, 517, 697, 838
TauI	GCSGC	1 cut(s)	834
Tru1I	TTAA	4 cut(s)	453, 462, 737, 861
Tru9I	TTAA	4 cut(s)	453, 462, 737, 861
TscAI	CASTG	2 cut(s)	312, 592
TseFI	GTSAC	2 cut(s)	20, 676
TseI	GCWGC	3 cut(s)	179, 287, 290
Tsp45I	GTSAC	2 cut(s)	20, 676
TspDTI	ATGAA	3 cut(s)	213, 286, 392
TspMI	CCCGGG	1 cut(s)	466
TspRI	CASTG	2 cut(s)	312, 592
Van91I	CCANNNNNTGG	1 cut(s)	855
VpaK11BI	GGWCC	1 cut(s)	846
XapI	RAATTY	3 cut(s)	236, 506, 697
XmaI	CCCGGG	1 cut(s)	466
XspI	CTAG	3 cut(s)	324, 473, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.