Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0019132

Physical Location & Seq

Genomic Coordinates Reverse (-)

3800887 .. 3802507

Gene Structure 1621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGCGTAACAATGCATTGGATTTGGGGTTCGAATGTTTGTTCCAGAAACTGCGGTGCTATTTGATTAACTGGGTTCCAAGCTTCTTCTCTCCCCACAAAACAACCCGTCTTATTTGCCGCGGTCTTCGCGCGAGTAAGCAATTCTCACCCCCAAACTCCGACAACATTTTCTTCAAAATATCCCCCACTCTAACCAGTTCATTAGTCAGCCGTGTTGTTCGCGAGTTTCGGAACTCGCCGCAGTTGGCTTTAGAGTTTTACAACTGGGTTCGTACGAACCAGAGTTGTTGTCCTCAATTTTTGGATTCATCTTGTACTTTAATTCATGTTTTGATCAATTCTAGGAGGTACGATGATGCCCTGTCTCTTATGGAGAGTCTAATGGGGGAAGAGGGTTTGCCCCCATTGGTTGTTTTGGAAGGGTTGGTTACTAGCTATGATGAAGGTTGTGGTTGTTCAAGCCCTGCAGTGTTTGATGCACTTGTGAGGGCTTGTACTCGGCTTGGGGCCACGGATGGTGCTTATGAGGTGATTAAAAAGCTGAGATTGGATGGTTACTGGGTTTCGATTCACGCTTGGAATAACTTTCTTAACCATGTGATTAAGTTGAATGAGATTGATAGGTTTTGGAAGATGTACAAGGAAATGCTTTCATATGGTTATGTTGAAAATGTTAATACTTTCAATTTGGTTATGTATGCTCTTTGTAAGGAGTGCAAGTTATTAGGAGCAATGTCGCGATATTATCGGATGTTGAAGAGTGGAATTTGGCCTAGTGTTGTTACTTTTAACATGATTATAGATGGAGCATGCAGGATGGGTGATATGGAACTTGCCTTGAAGGTTTTGAGAAGGATGGGGGTAATGTCGGAGGACTGTGTTACGCCCAATTCAGTTACTTACAACTGTATCATTAACGGTTTTTGCAAAATTGGTGGTTTATCGGTTGCAGAAGAAATTCGTGGTGAAATGACCGAGGCAGGTGTTGAGGCCAATTTGAGGACTTATGCAACTCTAGTAGATGGGTATGCAAAACAGGGGAGTTTGGAGGTGGCACTTCAATTGTGCGATGAAATGGTGGAAGGGGGTTTGACCCCTAATCCTGTTGTTTACAATTCAATTATCCATCGGCTTTACATAGAAGGAGATACTGAGGAAGCTCTTTCCTTATTGTCTGACATGATTGATAGGCATATATTCCCTGATCAGTTCACCTACTCAATCCTCATCAAGGGGCTCTCTAGAAGTGGGCTTCTGACGGAAGCAATTAGATTCATAACCACATCCTTGAGAAGAACCTCGTCAAGGATGTTTTCTCCCACAATATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

444

Amino Acids

50.07

Weight (kDa)

6.61

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	189 - 237	1.1e-06	PPR repeat family
PPR_2	PF13041	224 - 272	4.5e-09	PPR repeat family
PPR_long	PF17177	237 - 366	4.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	251 - 308	6.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	255 - 286	2.4e-09	PPR repeat
PPR_2	PF13041	258 - 286	2.4e-06	PPR repeat family
PPR_1	PF12854	293 - 325	3.5e-09	PPR repeat
PPR_2	PF13041	296 - 345	9.6e-13	PPR repeat family
PPR_3	PF13812	322 - 376	2.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	328 - 360	1.4e-07	PPR repeat
PPR_2	PF13041	366 - 414	2.2e-14	PPR repeat family
PPR_1	PF12854	398 - 425	2.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11710 AT1G11710
malus_domestica	MD02G1262300.v1.1 MD07G1057900.v1.1 MD07G1059400.v1.1
prunus_persica	Prupe.2G064100_v2.0.a1
pyrus_communis	pycom02g22430 pycom07g04410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	971
Acc36I	ACCTGC	1 cut(s)	971
AccII	CGCG	5 cut(s)	120, 129, 131, 222, 739
AciI	CCGC	4 cut(s)	52, 118, 120, 239
AcsI	RAATTY	2 cut(s)	765, 957
AfaI	GTAC	5 cut(s)	274, 316, 350, 496, 638
AfiI	CCNNNNNNNGG	3 cut(s)	999, 1231, 1305
AgsI	TTSAA	9 cut(s)	175, 459, 610, 668, 685, 757, 841, 1061, 1119
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	4 cut(s)	81, 435, 541, 1160
AluI	AGCT	4 cut(s)	81, 435, 541, 1160
Alw26I	GTCTC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	3 cut(s)	507, 770, 990
ApoI	RAATTY	2 cut(s)	765, 957
Asp700I	GAANNNNTTC	1 cut(s)	957
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	507
AsuHPI	GGTGA	5 cut(s)	138, 541, 833, 977, 1204
AsuII	TTCGAA	1 cut(s)	30
BaeI	ACNNNNGTAYC	2 cut(s)	892, 925
BanII	GRGCYC	1 cut(s)	1239
BbsI	GAAGAC	1 cut(s)	116
BccI	CCATC	7 cut(s)	509, 545, 797, 811, 850, 1016, 1134
BceAI	ACGGC	1 cut(s)	195
BclI	TGATCA	2 cut(s)	333, 1204
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	5 cut(s)	342, 432, 774, 1016, 1242
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	971
BisI	GCNGC	2 cut(s)	118, 239
BlsI	GCNGC	2 cut(s)	119, 240
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	2 cut(s)	75, 508
BmrI	ACTGGG	3 cut(s)	79, 274, 568
BmsI	GCATC	2 cut(s)	346, 466
BmuI	ACTGGG	3 cut(s)	79, 274, 568
BpiI	GAAGAC	1 cut(s)	116
Bpu14I	TTCGAA	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	1309
BsaJI	CCNNGG	3 cut(s)	118, 510, 975
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bsc4I	CCNNNNNNNGG	3 cut(s)	999, 1231, 1305
Bse1I	ACTGG	4 cut(s)	74, 195, 269, 563
Bse3DI	GCAATG	1 cut(s)	738
BseDI	CCNNGG	3 cut(s)	118, 510, 975
BseGI	GGATG	7 cut(s)	520, 556, 756, 822, 861, 1283, 1314
BseLI	CCNNNNNNNGG	3 cut(s)	999, 1231, 1305
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	2 cut(s)	533, 1143
BseNI	ACTGG	4 cut(s)	74, 195, 269, 563
Bsh1236I	CGCG	5 cut(s)	120, 129, 131, 222, 739
BshFI	GGCC	3 cut(s)	509, 772, 992
BsiWI	CGTACG	1 cut(s)	272
BslI	CCNNNNNNNGG	3 cut(s)	999, 1231, 1305
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	509, 772, 992
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	1239
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	2 cut(s)	333, 1204
Bsp68I	TCGCGA	2 cut(s)	222, 739
BspACI	CCGC	4 cut(s)	52, 118, 120, 239
BspANI	GGCC	3 cut(s)	509, 772, 992
BspCNI	CTCAG	2 cut(s)	534, 1144
BspFNI	CGCG	5 cut(s)	120, 129, 131, 222, 739
BspLI	GGNNCC	2 cut(s)	75, 508
BspMAI	CTGCAG	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	971
BspT104I	TTCGAA	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	738
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	4 cut(s)	74, 195, 269, 563
BssECI	CCNNGG	3 cut(s)	118, 510, 975
BssMI	GATC	2 cut(s)	333, 1204
Bst4CI	ACNGT	3 cut(s)	878, 908, 920
Bst6I	CTCTTC	2 cut(s)	384, 752
BstAUI	TGTACA	1 cut(s)	636
BstBI	TTCGAA	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	811
BstDEI	CTNAG	2 cut(s)	542, 1152
BstDSI	CCRYGG	2 cut(s)	118, 510
BstENI	CCTNNNNNAGG	2 cut(s)	1229, 1303
BstF5I	GGATG	7 cut(s)	520, 556, 756, 822, 861, 1283, 1314
BstFNI	CGCG	5 cut(s)	120, 129, 131, 222, 739
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	336, 1207
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	2 cut(s)	333, 1204
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	813
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	5 cut(s)	120, 129, 131, 222, 739
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	509, 772, 992
BtgI	CCRYGG	2 cut(s)	118, 510
BtgZI	GCGATG	1 cut(s)	1083
BtsCI	GGATG	7 cut(s)	520, 556, 756, 822, 861, 1283, 1314
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
BtuMI	TCGCGA	2 cut(s)	222, 739
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	1 cut(s)	811
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	507
Cfr42I	CCGCGG	1 cut(s)	121
Csp6I	GTAC	5 cut(s)	273, 315, 349, 495, 637
CspCI	CAANNNNNGTGG	2 cut(s)	916, 951
CviAII	CATG	5 cut(s)	326, 596, 793, 810, 1180
CviQI	GTAC	5 cut(s)	273, 315, 349, 495, 637
DdeI	CTNAG	2 cut(s)	542, 1152
DpnI	GATC	2 cut(s)	335, 1206
DpnII	GATC	2 cut(s)	333, 1204
Eam1104I	CTCTTC	2 cut(s)	384, 752
EarI	CTCTTC	2 cut(s)	384, 752
Eco24I	GRGCYC	1 cut(s)	1239
EcoNI	CCTNNNNNAGG	2 cut(s)	1229, 1303
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	1239
FaeI	CATG	5 cut(s)	329, 599, 796, 813, 1183
FatI	CATG	5 cut(s)	325, 595, 792, 809, 1179
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	2 cut(s)	333, 1204
Fnu4HI	GCNGC	2 cut(s)	118, 239
FokI	GGATG	7 cut(s)	527, 563, 763, 829, 868, 1270, 1321
FriOI	GRGCYC	1 cut(s)	1239
Fsp4HI	GCNGC	2 cut(s)	118, 239
FspBI	CTAG	5 cut(s)	342, 432, 774, 1016, 1242
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	118, 239
HaeIII	GGCC	3 cut(s)	509, 772, 992
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	329, 599, 796, 813, 1183
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	4 cut(s)	305, 376, 568, 1272
HphI	GGTGA	5 cut(s)	138, 541, 833, 977, 1204
Hpy166II	GTNNAC	2 cut(s)	1111, 1212
Hpy188I	TCNGA	6 cut(s)	160, 231, 750, 871, 1177, 1257
Hpy188III	TCNNGA	5 cut(s)	43, 221, 738, 1242, 1329
Hpy8I	GTNNAC	2 cut(s)	1111, 1212
HpyAV	CCTTC	6 cut(s)	413, 437, 835, 846, 1076, 1136
HpyCH4III	ACNGT	3 cut(s)	878, 908, 920
HpyCH4V	TGCA	9 cut(s)	14, 467, 479, 717, 813, 927, 950, 1010, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	2 cut(s)	542, 1152
Hsp92II	CATG	5 cut(s)	329, 599, 796, 813, 1183
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	2 cut(s)	333, 1204
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	333, 1204
LmnI	GCTCC	2 cut(s)	728, 806
LweI	GCATC	2 cut(s)	346, 466
MaeI	CTAG	5 cut(s)	342, 432, 774, 1016, 1242
MaeIII	GTNAC	6 cut(s)	5, 427, 554, 781, 880, 895
MalI	GATC	2 cut(s)	335, 1206
MboI	GATC	2 cut(s)	333, 1204
MboII	GAAGA	8 cut(s)	76, 116, 163, 401, 643, 769, 965, 1305
MfeI	CAATTG	1 cut(s)	1061
MhlI	GDGCHC	1 cut(s)	1239
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	2 cut(s)	183, 849
Mph1103I	ATGCAT	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	957
MseI	TTAA	8 cut(s)	66, 320, 534, 591, 603, 675, 789, 915
MspA1I	CMGCKG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	1061
MvnI	CGCG	5 cut(s)	120, 129, 131, 222, 739
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	2 cut(s)	333, 1204
NlaIII	CATG	5 cut(s)	329, 599, 796, 813, 1183
NlaIV	GGNNCC	2 cut(s)	75, 508
NmeAIII	GCCGAG	1 cut(s)	478
NruI	TCGCGA	2 cut(s)	222, 739
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	813
NspV	TTCGAA	1 cut(s)	30
PaeI	GCATGC	1 cut(s)	813
PaqCI	CACCTGC	1 cut(s)	971
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	3 cut(s)	305, 568, 1272
Pfl23II	CGTACG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	119, 240
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PspLI	CGTACG	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	75, 508
PspPI	GGNCC	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	49
RruI	TCGCGA	2 cut(s)	222, 739
RsaI	GTAC	5 cut(s)	274, 316, 350, 496, 638
RsaNI	GTAC	5 cut(s)	273, 315, 349, 495, 637
SacII	CCGCGG	1 cut(s)	121
SaqAI	TTAA	8 cut(s)	66, 320, 534, 591, 603, 675, 789, 915
SatI	GCNGC	2 cut(s)	118, 239
Sau3AI	GATC	2 cut(s)	333, 1204
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	1239
SfaNI	GCATC	2 cut(s)	346, 466
SfcI	CTRYAG	1 cut(s)	465
Sfr303I	CCGCGG	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	30
SgrBI	CCGCGG	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	1288
SmoI	CTYRAG	1 cut(s)	1288
SphI	GCATGC	1 cut(s)	813
SsiI	CCGC	4 cut(s)	52, 118, 120, 239
SspMI	CTAG	5 cut(s)	342, 432, 774, 1016, 1242
TaaI	ACNGT	3 cut(s)	878, 908, 920
TaqI	TCGA	2 cut(s)	30, 566
TaqII	GACCGA	1 cut(s)	989
TatI	WGTACW	3 cut(s)	314, 494, 636
TauI	GCSGC	2 cut(s)	120, 241
TfiI	GAWTC	3 cut(s)	305, 568, 1272
Tru1I	TTAA	8 cut(s)	66, 320, 534, 591, 603, 675, 789, 915
Tru9I	TTAA	8 cut(s)	66, 320, 534, 591, 603, 675, 789, 915
TscAI	CASTG	1 cut(s)	474
TspDTI	ATGAA	7 cut(s)	189, 297, 314, 456, 642, 1086, 1264
TspGWI	ACGGA	2 cut(s)	527, 1274
TspRI	CASTG	1 cut(s)	474
XagI	CCTNNNNNAGG	2 cut(s)	1229, 1303
XapI	RAATTY	2 cut(s)	765, 957
XbaI	TCTAGA	1 cut(s)	1241
XceI	RCATGY	1 cut(s)	813
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	5 cut(s)	342, 432, 774, 1016, 1242
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.