Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014584

Physical Location & Seq

Genomic Coordinates Reverse (-)

8528355 .. 8534834

Gene Structure 6480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGTTTACGTGAGCTCGAAAAAGGACCTGAAACGAAGGGAGATACAGAAGAAGAAGGCCAAGTCTGGAGGCTTTGAGTCTCTGAATCTAAGTCCCAATGTCTTCAATGCAATCAAGCGCAAGGGCTACAAAGTACCCACACCCATCCAGCGCAAGACCATGCCGCTTATTCTAGCTGGAAACGATGTCGTTGCCATGGCCAGAACCGGTTCTGGCAAGACCGCCGCTTTTCTGATCCCCATGCTCGAGCGTCTCAAGGAGCACGTACCTCAGGGCGGCGTTCGGGCTCTCATTCTATCTCCCACCAGGGACTTGGCGCTACAGACTCACAAGTTTACCAAAGAGCTCAGCCGTTTCATGGATGTCCGTATTAGTTTACTAGTTGGTGGCGATAGCATGGAAACTCAGTTTGAAGAATTAGCCCAAAACCCTGATATTATAATTGCAACTCCCGGTAGGTTGATGCACCATTTAGCTGAGGTTGATGACATGACACTTAGGACAGTGGAGTATGTTGTTTTTGATGAAGCGGATTGCCTCTTTGGCATGGGTTTCGCGGAGCAGTTGCATAAAATCCTTGGACAGCTGAGTGAGAATCGCCAGACCCTGCTTTTTAGTGCAACACTACCCTCTGCTCTTGCAGAATTTGCCAAGGCTGGTCTGCAAGACCCTCGGCTTGTGCGGCTTGATTTGGATACTAAGATTAGCCCTGACTTGAAGCTTATGTTTTTCACCTTGAGACAGGAAGAAAAGCACGCTGCAATACTTTATTTGATAAGGGAGCATATTAGTTCGGGTGAGCAGACATTGATATTTGTATCTACAAAACATCATGTGGAGTTTCTGAATATCTTGTTTAGAGAAGAGGGCATTGAGCCGTCTGTATGTTATGGTGACATGGATCATGATGCTCGCCAGATTAATGTATCAAGGTTTAGGTCAAGAAAGACTATGCAGTTAATTGTTACTGATGTTGCAGCTAGAGGAATTGACATTCCATTGCTTGACAATGTCATCAATTGGGACTTTCCCCCAAAGCCTAAACTTTTTGTTCATCGAGTAGGCCGAGCTGCAAGGGCTGGTCGGACTGGTACTGCATTCTCCTTTGTGACATCTGAAGATATGCCTAACCTTTTAGATCTACATCTGTTTCTTTCAAAGCCAATTAGGGCTGCACCCACAGAGGAGGAAGTTTTACATGATATGGATGGAGTGATGTCTAAGATTGATCAAGCAATTGCTAATGGAGAAACTGTTTATGGGCGTTTTCCCCAAACAGTTATAGATCTTGTTTCGGATAGAGTTAGAGAGATAATAGATTCTTCTTCTGAACTCAGTAATATGGTGAAAACCTGTGCAAATGCATTCCGCTTGTATTCAAAGACAAAACCCCCACCTTCAAAGGAGTCTGTTAAAAGAGCAAAAGATTTACCTCGCGAAGGGTTGCATCCAATTTTTAAAAGTGTACTGGATGGTGGAGAGTTGAAGGCATTGGCATTTTCTGAGCGGTTGAAGACATTCAGACCCAAGCAGACAATTCTAGAAACTGAAGGTGAAGCTGCTAAGTCAAAGAATCTGAAGGGTTCTTCTCGTCACTGGGTTGATGTAATGAAGGAAAAAAGAGCTATTCATGAAGAGGTCATTAATTTATTTCATCAACAACGTTCTAATAATAATCATGCGGAAAAGGAAGATGAAGATGATTTTATTCCCTCAAAGACCAAGGAGAAGAAAGTATCTTCAGGCTCCAAAAGGAAGGCAAAGAGCTTCAAGGATGATGAAAACTTTATAAGTTCAATACCAACTAATCATCATACCGAAGCAGGACTTTCAGTGAGAGGGAAGGACGACTTTGACTCAAATAGGTTGGAAGCTGCTGTTATTGATCTCATTGCAGATGATAATGTTGGCATGAAGAAACAGAAATCAGTATTTCATTGGGATAAGAGGGGGAAAAAGTACATAAAGCTAAACAATGGCGATCGTGTGACAGCTAGCGGCAAGATAAAGACAGAGAGTGGTGCAAAAGCAAAGCTTGAGAAAACTGGGATATACAAGAAGTGGAAAGAACGTTCACACAAGAGAGTATCTCTTACAGGAACTAATGAAGGGAATGCTGAGGATTCCACAGGTAACCGTAGATGGCAGGGGAAGGGTAAGTCTTTTGGAGGCAGGAAGCAACACTCTGTGCCTAATGCTCACGTGCGTTCTGAAATCAAAGACTTAGAACAGGTTCGCAAGGAGCGACAGAAAAAGGCCGACAGGGTCTCTTATATGAAGAGCAAGTCGGCCAAGGGTGGTAAAAAGTTTGGTAAAAATGGTAAAAGAGGAAAGGGAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBP10CT DEAD Helicase_C

Protein Analysis

782

Amino Acids

87.98

Weight (kDa)

9.72

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	47 - 215	1.1e-50	DEAD/DEAH box helicase
Helicase_C	PF00271	253 - 361	3.6e-24	Helicase conserved C-terminal domain
DBP10CT	PF08147	629 - 690	7.8e-12	DBP10CT (NUC160) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77030
fragaria_vesca	FvH4_2g15160 FvH4_2g15160
malus_domestica	MD07G1108300.v1.1
prunus_persica	Prupe.2G131100_v2.0.a1 Prupe.2G131100_v2.0.a1
pyrus_communis	pycom07g09270
rosa_chinensis	RchiOBHm_Chr6g0277821
rosa_laevigata	RLG00000013266
rosa_multiflora	Rmu_sc0001874.1_g000004
rosa_roxburghii	Rroxscaffold_7G00190870
rosa_rugosa	Rorug06G0111700
rosa_samantha	Rh6AG222500 Rh6BG226000 Rh6CG228500 Rh6DG219600
rosa_wichuraiana	Rw6G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	440, 1790
AccBSI	CCGCTC	1 cut(s)	1507
AccII	CGCG	2 cut(s)	557, 1437
AclI	AACGTT	2 cut(s)	1663, 2071
AclWI	GGATC	2 cut(s)	229, 909
AcoI	YGGCCR	2 cut(s)	198, 2289
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	4 cut(s)	1137, 1569, 1598, 1725
AcvI	CACGTG	1 cut(s)	2203
AdeI	CACNNNGTG	1 cut(s)	2188
AfaI	GTAC	5 cut(s)	135, 267, 1093, 1467, 1961
AfiI	CCNNNNNNNGG	3 cut(s)	275, 358, 1439
AgeI	ACCGGT	1 cut(s)	206
AhlI	ACTAGT	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	305
AloI	GAACNNNNNNTCC	2 cut(s)	2056, 2088
Alw21I	GWGCWC	3 cut(s)	17, 264, 348
Alw26I	GTCTC	4 cut(s)	84, 257, 733, 2272
AlwI	GGATC	2 cut(s)	229, 909
AlwNI	CAGNNNCTG	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	5 cut(s)	57, 198, 1063, 2256, 2289
ApeKI	GCWGC	6 cut(s)	758, 977, 1070, 1172, 1559, 1874
ApoI	RAATTY	1 cut(s)	644
AseI	ATTAAT	2 cut(s)	921, 1644
AsiGI	ACCGGT	1 cut(s)	206
Asp700I	GAANNNNTTC	3 cut(s)	208, 1517, 2232
AspLEI	GCGC	3 cut(s)	120, 153, 319
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	5 cut(s)	724, 809, 905, 1357, 1565
AsuNHI	GCTAGC	1 cut(s)	1994
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	3 cut(s)	17, 289, 348
BbrPI	CACGTG	1 cut(s)	2203
BbsI	GAAGAC	2 cut(s)	94, 1520
Bbv12I	GWGCWC	3 cut(s)	17, 264, 348
BbvCI	CCTCAGC	2 cut(s)	477, 2118
BbvI	GCAGC	6 cut(s)	745, 989, 1057, 1159, 1546, 1861
BccI	CCATC	4 cut(s)	152, 1202, 1466, 2136
BceAI	ACGGC	2 cut(s)	336, 862
BcgI	CGANNNNNNTGC	6 cut(s)	173, 207, 535, 569, 653, 687
BciT130I	CCWGG	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	688
BclI	TGATCA	1 cut(s)	1228
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	4 cut(s)	84, 257, 733, 2272
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	5 cut(s)	173, 380, 981, 1541, 1995
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	543
BglII	AGATCT	2 cut(s)	1138, 1285
BlpI	GCTNAGC	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	307, 453
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	1747
BmrFI	CCNGG	2 cut(s)	307, 453
BmrI	ACTGGG	2 cut(s)	1606, 2055
BmsI	GCATC	3 cut(s)	453, 898, 1456
BmtI	GCTAGC	1 cut(s)	1998
BmuI	ACTGGG	2 cut(s)	1606, 2055
BpiI	GAAGAC	2 cut(s)	94, 1520
BplI	GAGNNNNNCTC	2 cut(s)	2074, 2106
BpmI	CTGGAG	1 cut(s)	87
Bpu10I	CCTNAGC	2 cut(s)	477, 2118
Bpu1102I	GCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	3 cut(s)	239, 757, 2057
BpuMI	CCSGG	1 cut(s)	453
BsaAI	YACGTR	3 cut(s)	10, 265, 2203
BsaBI	GATNNNNATC	1 cut(s)	1143
BsaI	GGTCTC	1 cut(s)	2272
BsaJI	CCNNGG	7 cut(s)	195, 306, 577, 651, 671, 1722, 2292
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	1239, 1269
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 358, 1439
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	4 cut(s)	1093, 1473, 1601, 2050
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	998, 1890
Bse8I	GATNNNNATC	1 cut(s)	1143
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	7 cut(s)	195, 306, 577, 651, 671, 1722, 2292
BseGI	GGATG	6 cut(s)	144, 367, 1213, 1447, 1477, 1780
BseJI	GATNNNNATC	1 cut(s)	1143
BseLI	CCNNNNNNNGG	3 cut(s)	275, 358, 1439
BseMI	GCAATG	2 cut(s)	998, 1890
BseMII	CTCAG	8 cut(s)	284, 361, 419, 468, 578, 1348, 1494, 2109
BseNI	ACTGG	4 cut(s)	1093, 1473, 1601, 2050
BseRI	GAGGAG	1 cut(s)	1199
BseXI	GCAGC	6 cut(s)	745, 989, 1057, 1159, 1546, 1861
BsgI	GTGCAG	1 cut(s)	1158
Bsh1236I	CGCG	2 cut(s)	557, 1437
Bsh1285I	CGRYCG	1 cut(s)	1984
BshFI	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
BshTI	ACCGGT	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	1984
BsiHKAI	GWGCWC	3 cut(s)	17, 264, 348
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	207, 453
BslFI	GGGAC	3 cut(s)	78, 323, 1037
BslI	CCNNNNNNNGG	3 cut(s)	275, 358, 1439
BsmAI	GTCTC	4 cut(s)	84, 257, 733, 2272
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	3 cut(s)	78, 323, 1037
BsmI	GAATGC	3 cut(s)	1097, 1364, 2119
BsnI	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
Bso31I	GGTCTC	1 cut(s)	2272
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	4 cut(s)	17, 264, 289, 348
Bsp143I	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
Bsp1720I	GCTNAGC	1 cut(s)	347
Bsp19I	CCATGG	1 cut(s)	195
Bsp68I	TCGCGA	1 cut(s)	1437
BspANI	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
BspCNI	CTCAG	8 cut(s)	283, 360, 418, 469, 579, 1347, 1495, 2110
BspFNI	CGCG	2 cut(s)	557, 1437
BspHI	TCATGA	2 cut(s)	904, 1630
BspLI	GGNNCC	1 cut(s)	1747
BspOI	GCTAGC	1 cut(s)	1998
BspPI	GGATC	2 cut(s)	229, 909
BspQI	GCTCTTC	1 cut(s)	2273
BspTNI	GGTCTC	1 cut(s)	2272
BsrBI	CCGCTC	1 cut(s)	1507
BsrDI	GCAATG	2 cut(s)	998, 1890
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	4 cut(s)	1093, 1473, 1601, 2050
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	7 cut(s)	195, 306, 577, 651, 671, 1722, 2292
BssMI	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
BssT1I	CCWWGG	5 cut(s)	195, 577, 651, 1722, 2292
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	4 cut(s)	505, 1255, 1279, 2138
Bst6I	CTCTTC	3 cut(s)	858, 1629, 2273
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	3 cut(s)	10, 265, 2203
BstC8I	GCNNGC	3 cut(s)	756, 913, 1996
BstDSI	CCRYGG	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	2132
BstENI	CCTNNNNNAGG	1 cut(s)	1437
BstF5I	GGATG	6 cut(s)	144, 367, 1213, 1447, 1477, 1780
BstFNI	CGCG	2 cut(s)	557, 1437
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	3 cut(s)	120, 153, 319
BstKTI	GATC	7 cut(s)	237, 904, 1141, 1231, 1288, 1888, 1984
BstMAI	GTCTC	4 cut(s)	84, 257, 733, 2272
BstMBI	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
BstMCI	CGRYCG	1 cut(s)	1984
BstMWI	GCNNNNNNNGC	4 cut(s)	543, 647, 682, 1076
BstNI	CCWGG	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	2132
BstSCI	CCNGG	2 cut(s)	305, 451
BstSFI	CTRYAG	1 cut(s)	320
BstUI	CGCG	2 cut(s)	557, 1437
BstV1I	GCAGC	6 cut(s)	745, 989, 1057, 1159, 1546, 1861
BstV2I	GAAGAC	2 cut(s)	94, 1520
BstX2I	RGATCY	2 cut(s)	1138, 1285
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	2 cut(s)	1138, 1285
Bsu36I	CCTNAGG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	6 cut(s)	144, 367, 1213, 1447, 1477, 1780
BtsIMutI	CAGTG	3 cut(s)	510, 1594, 1839
BtuMI	TCGCGA	1 cut(s)	1437
Cac8I	GCNNGC	3 cut(s)	756, 913, 1996
CaiI	CAGNNNCTG	1 cut(s)	607
CciI	TCATGA	2 cut(s)	904, 1630
CfoI	GCGC	3 cut(s)	120, 153, 319
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	5 cut(s)	134, 266, 1092, 1466, 1960
CspAI	ACCGGT	1 cut(s)	206
CviQI	GTAC	5 cut(s)	134, 266, 1092, 1466, 1960
DpnI	GATC	7 cut(s)	236, 903, 1140, 1230, 1287, 1887, 1983
DpnII	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
DraI	TTTAAA	1 cut(s)	1459
DraIII	CACNNNGTG	1 cut(s)	2188
EaeI	YGGCCR	2 cut(s)	198, 2289
Eam1104I	CTCTTC	3 cut(s)	858, 1629, 2273
EarI	CTCTTC	3 cut(s)	858, 1629, 2273
Ecl136II	GAGCTC	2 cut(s)	15, 346
Eco130I	CCWWGG	5 cut(s)	195, 577, 651, 1722, 2292
Eco24I	GRGCYC	3 cut(s)	17, 289, 348
Eco31I	GGTCTC	1 cut(s)	2272
Eco47I	GGWCC	1 cut(s)	25
Eco53kI	GAGCTC	2 cut(s)	15, 346
Eco57I	CTGAAG	4 cut(s)	1137, 1569, 1598, 1725
Eco72I	CACGTG	1 cut(s)	2203
Eco81I	CCTNAGG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	2132
EcoICRI	GAGCTC	2 cut(s)	15, 346
EcoNI	CCTNNNNNAGG	1 cut(s)	1437
EcoO109I	RGGNCCY	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	2132
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	5 cut(s)	195, 577, 651, 1722, 2292
EcoT22I	ATGCAT	1 cut(s)	1366
EcoT38I	GRGCYC	3 cut(s)	17, 289, 348
ErhI	CCWWGG	5 cut(s)	195, 577, 651, 1722, 2292
Esp3I	CGTCTC	1 cut(s)	257
FalI	AAGNNNNNCTT	6 cut(s)	1812, 1844, 1835, 1867, 2019, 2051
FaqI	GGGAC	3 cut(s)	78, 323, 1037
FbaI	TGATCA	1 cut(s)	1228
FokI	GGATG	6 cut(s)	131, 374, 1220, 1434, 1484, 1787
FriOI	GRGCYC	3 cut(s)	17, 289, 348
FspBI	CTAG	5 cut(s)	173, 380, 981, 1541, 1995
GlaI	GCGC	3 cut(s)	119, 152, 318
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
HapII	CCGG	2 cut(s)	207, 453
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	3 cut(s)	120, 153, 319
Hin6I	GCGC	3 cut(s)	118, 151, 317
HinP1I	GCGC	3 cut(s)	118, 151, 317
HindIII	AAGCTT	2 cut(s)	719, 2033
HinfI	GANTC	9 cut(s)	77, 85, 325, 595, 1319, 1406, 1573, 1856, 2123
HpaII	CCGG	2 cut(s)	207, 453
HphI	GGTGA	5 cut(s)	724, 809, 905, 1357, 1565
Hpy166II	GTNNAC	5 cut(s)	7, 336, 377, 1466, 2075
Hpy188III	TCNNGA	6 cut(s)	66, 905, 942, 1436, 1541, 1631
Hpy8I	GTNNAC	5 cut(s)	7, 336, 377, 1466, 2075
HpyCH4III	ACNGT	4 cut(s)	505, 1255, 1279, 2138
HpyCH4IV	ACGT	5 cut(s)	9, 264, 1663, 2071, 2202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	543, 647, 682, 1076
HpySE526I	ACGT	5 cut(s)	9, 264, 1663, 2071, 2202
HspAI	GCGC	3 cut(s)	118, 151, 317
Ksp22I	TGATCA	1 cut(s)	1228
Kzo9I	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
LguI	GCTCTTC	1 cut(s)	2273
LmnI	GCTCC	5 cut(s)	259, 559, 781, 1751, 2242
Lsp1109I	GCAGC	6 cut(s)	745, 989, 1057, 1159, 1546, 1861
LweI	GCATC	3 cut(s)	453, 898, 1456
MaeI	CTAG	5 cut(s)	173, 380, 981, 1541, 1995
MaeII	ACGT	5 cut(s)	9, 264, 1663, 2071, 2202
MaeIII	GTNAC	6 cut(s)	893, 964, 1108, 1592, 1987, 2132
MalI	GATC	7 cut(s)	236, 903, 1140, 1230, 1287, 1887, 1983
MbiI	CCGCTC	1 cut(s)	1507
MboI	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
MfeI	CAATTG	2 cut(s)	1018, 1236
MflI	RGATCY	2 cut(s)	1138, 1285
MhlI	GDGCHC	4 cut(s)	17, 264, 289, 348
MlsI	TGGCCA	1 cut(s)	200
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	4 cut(s)	86, 319, 1415, 1850
MmeI	TCCRAC	2 cut(s)	1064, 1848
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	1366
MroXI	GAANNNNTTC	3 cut(s)	208, 1517, 2232
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	5 cut(s)	921, 959, 1413, 1458, 1644
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	2 cut(s)	207, 453
MspR9I	CCNGG	2 cut(s)	307, 453
MunI	CAATTG	2 cut(s)	1018, 1236
Mva1269I	GAATGC	3 cut(s)	1097, 1364, 2119
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	2 cut(s)	557, 1437
MwoI	GCNNNNNNNGC	4 cut(s)	543, 647, 682, 1076
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
NheI	GCTAGC	1 cut(s)	1994
NlaIV	GGNNCC	1 cut(s)	1747
NmeAIII	GCCGAG	2 cut(s)	652, 1091
NmuCI	GTSAC	4 cut(s)	893, 1108, 1592, 1987
NruI	TCGCGA	1 cut(s)	1437
NsiI	ATGCAT	1 cut(s)	1366
PaeR7I	CTCGAG	1 cut(s)	245
PagI	TCATGA	2 cut(s)	904, 1630
PciSI	GCTCTTC	1 cut(s)	2273
PcsI	WCGNNNNNNNCGW	2 cut(s)	1063, 2242
PctI	GAATGC	3 cut(s)	1097, 1364, 2119
PdmI	GAANNNNTTC	3 cut(s)	208, 1517, 2232
PfeI	GAWTC	5 cut(s)	85, 595, 1319, 1573, 2123
PflFI	GACNNNGTC	2 cut(s)	1010, 2264
PinAI	ACCGGT	1 cut(s)	206
Ple19I	CGATCG	1 cut(s)	1984
PleI	GAGTC	4 cut(s)	85, 319, 1414, 1850
PmaCI	CACGTG	1 cut(s)	2203
PmlI	CACGTG	1 cut(s)	2203
PpsI	GAGTC	4 cut(s)	85, 319, 1414, 1850
Ppu21I	YACGTR	3 cut(s)	10, 265, 2203
PpuMI	RGGWCCY	1 cut(s)	25
PshBI	ATTAAT	2 cut(s)	921, 1644
PsiI	TTATAA	2 cut(s)	440, 1790
Psp124BI	GAGCTC	2 cut(s)	17, 348
Psp1406I	AACGTT	2 cut(s)	1663, 2071
Psp5II	RGGWCCY	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	305
PspCI	CACGTG	1 cut(s)	2203
PspEI	GGTNACC	1 cut(s)	2132
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	1747
PspPI	GGNCC	1 cut(s)	25
PspPPI	RGGWCCY	1 cut(s)	25
PspXI	VCTCGAGB	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	1138, 1285
PsyI	GACNNNGTC	2 cut(s)	1010, 2264
PvuI	CGATCG	1 cut(s)	1984
PvuII	CAGCTG	1 cut(s)	586
RruI	TCGCGA	1 cut(s)	1437
RsaI	GTAC	5 cut(s)	135, 267, 1093, 1467, 1961
RsaNI	GTAC	5 cut(s)	134, 266, 1092, 1466, 1960
SacI	GAGCTC	2 cut(s)	17, 348
SapI	GCTCTTC	1 cut(s)	2273
SaqAI	TTAA	5 cut(s)	921, 959, 1413, 1458, 1644
Sau3AI	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	4 cut(s)	86, 319, 1415, 1850
ScrFI	CCNGG	2 cut(s)	307, 453
SduI	GDGCHC	4 cut(s)	17, 264, 289, 348
SfaNI	GCATC	3 cut(s)	453, 898, 1456
SfcI	CTRYAG	1 cut(s)	320
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	4 cut(s)	245, 254, 736, 2036
SmoI	CTYRAG	4 cut(s)	245, 254, 736, 2036
SpeI	ACTAGT	1 cut(s)	379
SspMI	CTAG	5 cut(s)	173, 380, 981, 1541, 1995
SstI	GAGCTC	2 cut(s)	17, 348
StyD4I	CCNGG	2 cut(s)	305, 451
StyI	CCWWGG	5 cut(s)	195, 577, 651, 1722, 2292
TaaI	ACNGT	4 cut(s)	505, 1255, 1279, 2138
TaiI	ACGT	5 cut(s)	12, 267, 1666, 2074, 2205
TaqI	TCGA	3 cut(s)	17, 246, 1057
TatI	WGTACW	2 cut(s)	1465, 1959
TauI	GCSGC	5 cut(s)	166, 227, 279, 685, 2001
TfiI	GAWTC	5 cut(s)	85, 595, 1319, 1573, 2123
Tru1I	TTAA	5 cut(s)	921, 959, 1413, 1458, 1644
Tru9I	TTAA	5 cut(s)	921, 959, 1413, 1458, 1644
TscAI	CASTG	3 cut(s)	510, 1601, 1839
TseFI	GTSAC	4 cut(s)	893, 1108, 1592, 1987
TseI	GCWGC	6 cut(s)	758, 977, 1070, 1172, 1559, 1874
Tsp45I	GTSAC	4 cut(s)	893, 1108, 1592, 1987
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	3 cut(s)	510, 1601, 1839
Tth111I	GACNNNGTC	2 cut(s)	1010, 2264
VpaK11BI	GGWCC	1 cut(s)	25
VspI	ATTAAT	2 cut(s)	921, 1644
XagI	CCTNNNNNAGG	1 cut(s)	1437
XapI	RAATTY	1 cut(s)	644
XbaI	TCTAGA	1 cut(s)	1540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	245
XmnI	GAANNNNTTC	3 cut(s)	208, 1517, 2232
XspI	CTAG	5 cut(s)	173, 380, 981, 1541, 1995
Zsp2I	ATGCAT	1 cut(s)	1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.