Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0019821

Physical Location & Seq

Genomic Coordinates Forward (+)

14462326 .. 14462804

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGAGCTTATATCCGGGAGAAGCCCTGTTGATCATAGTCGACCACAAGGAGAGGTGAATCTAGTTGAATGGTTAAAAACCATGGTTGGGAAACGAAAAGCAGAGGATGTGGTTGATCCCAAGCTGCAAGAGATGCCTGCTTCAAAAGCACTTAAACGTGCTATGTTGATTGCTCTTCGATGTGTTGATCCTGATGCCACAAAAAGGCCAAAAATGGGACATGTGATCCACATGCTCGAGGCTGATGACTTGCTATTCCGTGATGAACGCCAACCTGGTAGAGATACGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

98

Amino Acids

10.99

Weight (kDa)

7.92

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019821)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g12980
rosa_roxburghii	Rroxscaffold_2G00137730
rosa_samantha	Rh1AG269000 Rh1CG252700 Rh1DG264000 Rh2BG192400 Rh2DG188900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	40
AclWI	GGATC	3 cut(s)	110, 182, 220
AfiI	CCNNNNNNNGG	3 cut(s)	87, 204, 215
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	68, 144
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	7, 124
AluI	AGCT	2 cut(s)	7, 124
AlwI	GGATC	3 cut(s)	110, 182, 220
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	16, 276
BmeT110I	CYCGRG	1 cut(s)	236
BmrFI	CCNGG	2 cut(s)	16, 276
BmsI	GCATC	2 cut(s)	123, 184
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 204, 215
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	3 cut(s)	87, 204, 215
BseXI	GCAGC	1 cut(s)	111
BshFI	GGCC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	87, 204, 215
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	236
Bsp143I	GATC	4 cut(s)	31, 115, 187, 225
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	1 cut(s)	208
BspPI	GGATC	3 cut(s)	110, 182, 220
BspQI	GCTCTTC	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	4 cut(s)	31, 115, 187, 225
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	4 cut(s)	34, 118, 190, 228
BstMBI	GATC	4 cut(s)	31, 115, 187, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 146
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	2 cut(s)	224, 235
BstSCI	CCNGG	2 cut(s)	14, 274
BstV1I	GCAGC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	274
CviAII	CATG	3 cut(s)	82, 221, 232
CviJI	RGCY	5 cut(s)	7, 24, 124, 208, 242
CviKI_1	RGCY	5 cut(s)	7, 24, 124, 208, 242
DpnI	GATC	4 cut(s)	33, 117, 189, 227
DpnII	GATC	4 cut(s)	31, 115, 187, 225
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	85, 224, 235
FaiI	YATR	6 cut(s)	11, 36, 83, 164, 222, 233
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	3 cut(s)	81, 220, 231
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	3 cut(s)	85, 224, 235
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188III	TCNNGA	2 cut(s)	191, 291
Hpy8I	GTNNAC	1 cut(s)	41
HpyCH4IV	ACGT	2 cut(s)	157, 287
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 146
HpySE526I	ACGT	2 cut(s)	157, 287
Hsp92II	CATG	3 cut(s)	85, 224, 235
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	31, 115, 187, 225
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	28, 39, 150, 204, 261, 288
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	123, 184
MabI	ACCWGGT	1 cut(s)	274
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	2 cut(s)	157, 287
MalI	GATC	4 cut(s)	33, 117, 189, 227
MboI	GATC	4 cut(s)	31, 115, 187, 225
MboII	GAAGA	1 cut(s)	167
MnlI	CCTC	3 cut(s)	46, 97, 232
MseI	TTAA	2 cut(s)	74, 153
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	16, 276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	133, 146
NciI	CCSGG	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	4 cut(s)	31, 115, 187, 225
NlaIII	CATG	3 cut(s)	85, 224, 235
NspI	RCATGY	2 cut(s)	224, 235
PaeR7I	CTCGAG	1 cut(s)	236
PciI	ACATGT	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	58
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	126
PscI	ACATGT	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	74, 153
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	4 cut(s)	31, 115, 187, 225
ScrFI	CCNGG	2 cut(s)	16, 276
SetI	ASST	6 cut(s)	9, 57, 126, 160, 277, 290
SexAI	ACCWGGT	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	123, 184
Sfr274I	CTCGAG	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	14, 274
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	2 cut(s)	160, 290
TaqI	TCGA	3 cut(s)	40, 178, 237
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	74, 153
Tru9I	TTAA	2 cut(s)	74, 153
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	248
XceI	RCATGY	2 cut(s)	224, 235
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	40
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.