Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019821

Physical Location & Seq

Genomic Coordinates Reverse (-)

17381100 .. 17383519

Gene Structure 2420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG192400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCTGATACCAAAACAGAGCACATGAACGACCACCTCTCGGAACCCACCTCCATTTTTGGCCTGAGCTTGTGGGTGGTTCTCGGAGTTTGTGTTGGAGCCGCCTTTGTGCTTGTTTTGGTTCTCATTTCGCTCTACTTGGCCTCCAAGCGATCCAAGAACAAGTCTTTACAGACACCCACAATCCCTATTGTTTCCAAGGAGATCCAGGAGATCAGGGTTGACCATGTTCGGACCCAAGTCCAAGCTTACGCGAACCCTGAACCCGACCCGGCTCCGAGAATCGAGAGGCAGGCTTTGCTCAAGTCTGCAGAGGAAGAGAGCCCAACTGGGTACCAGAAGGTGAATTTAGTTGAGTGGCTTAAGAAGATGGTTGCTAACAGAGAACCAGAGAAAGTATTGGATCCTAAGTTATCTGAGAAACCTCGTTCCAGAGCACTTAAGAGGGCTCTTCTTGTAGCTTTGAAGTGTGTGGACCCAAATGCACTGAAGCGGCCAAAAATGGGACATGTTGTTCATATGCTAGAAGCTGAAGAGGCGCAATTCAAAGATGATGGGAGATCTATAAGGGACCTTGGATGCTCAGATGTTGACAATGTGAAGAATGGGTTGAAGGAAAAGCAGGTAACAGAATCAGGTGATAGTAGCAGATATGAAAATGGAATGCATGCTGATAAGACAAGACAGAGACATGAAGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

234

Amino Acids

26.34

Weight (kDa)

8.65

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019821)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g12980
rosa_roxburghii	Rroxscaffold_2G00137730
rosa_samantha	Rh1AG269000 Rh1CG252700 Rh1DG264000 Rh2BG192400 Rh2DG188900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	613
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	333
AccII	CGCG	1 cut(s)	254
AciI	CCGC	2 cut(s)	102, 493
AclWI	GGATC	4 cut(s)	147, 199, 398, 411
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	509, 552
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	40, 503
AflII	CTTAAG	2 cut(s)	362, 440
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	3 cut(s)	466, 547, 613
AjnI	CCWGG	1 cut(s)	207
AloI	GAACNNNNNNTCC	2 cut(s)	498, 530
AluBI	AGCT	4 cut(s)	69, 248, 461, 530
AluI	AGCT	4 cut(s)	69, 248, 461, 530
Alw21I	GWGCWC	2 cut(s)	24, 439
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	4 cut(s)	147, 199, 398, 411
AoxI	GGCC	3 cut(s)	61, 141, 494
ApoI	RAATTY	1 cut(s)	346
Asp718I	GGTACC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	3 cut(s)	234, 475, 571
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	355, 650
AvaII	GGWCC	3 cut(s)	234, 475, 571
BamHI	GGATCC	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	2 cut(s)	326, 451
Bbv12I	GWGCWC	2 cut(s)	24, 439
BccI	CCATC	2 cut(s)	364, 548
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	309
BfrI	CTTAAG	2 cut(s)	362, 440
BfuAI	ACCTGC	1 cut(s)	613
BglII	AGATCT	1 cut(s)	560
BisI	GCNGC	2 cut(s)	102, 494
BlsI	GCNGC	2 cut(s)	103, 495
Bme1390I	CCNGG	2 cut(s)	209, 272
Bme18I	GGWCC	3 cut(s)	234, 475, 571
BmgT120I	GGNCC	3 cut(s)	234, 475, 571
BmiI	GGNNCC	8 cut(s)	45, 100, 236, 276, 335, 405, 477, 572
BmrFI	CCNGG	2 cut(s)	209, 272
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	339
BoxI	GACNNNNGTC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	198, 574
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 503
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	198, 574
BseGI	GGATG	1 cut(s)	584
BseLI	CCNNNNNNNGG	2 cut(s)	40, 503
BseMII	CTCAG	3 cut(s)	56, 408, 597
BseNI	ACTGG	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	63, 143, 496
BshNI	GGYRCC	1 cut(s)	333
BsiHKAI	GWGCWC	2 cut(s)	24, 439
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	519, 584
BslI	CCNNNNNNNGG	2 cut(s)	40, 503
BsmAI	GTCTC	1 cut(s)	682
BsmFI	GGGAC	2 cut(s)	519, 584
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	3 cut(s)	63, 143, 496
Bsp1286I	GDGCHC	4 cut(s)	24, 326, 439, 451
Bsp143I	GATC	5 cut(s)	152, 204, 213, 403, 560
BspACI	CCGC	2 cut(s)	102, 493
BspANI	GGCC	3 cut(s)	63, 143, 496
BspCNI	CTCAG	3 cut(s)	57, 409, 596
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	8 cut(s)	45, 100, 236, 276, 335, 405, 477, 572
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	4 cut(s)	147, 199, 398, 411
BspQI	GCTCTTC	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	333
BspTI	CTTAAG	2 cut(s)	362, 440
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	198, 574
BssMI	GATC	5 cut(s)	152, 204, 213, 403, 560
BssT1I	CCWWGG	2 cut(s)	198, 574
Bst2UI	CCWGG	1 cut(s)	209
Bst6I	CTCTTC	4 cut(s)	312, 456, 528, 690
BstAFI	CTTAAG	2 cut(s)	362, 440
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	294, 669
BstDEI	CTNAG	4 cut(s)	65, 408, 417, 583
BstF5I	GGATG	1 cut(s)	584
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	5 cut(s)	155, 207, 216, 406, 563
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	5 cut(s)	152, 204, 213, 403, 560
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 536
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	2 cut(s)	512, 671
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	207, 270
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	254
BstX2I	RGATCY	3 cut(s)	204, 403, 560
BstYI	RGATCY	3 cut(s)	204, 403, 560
BsuRI	GGCC	3 cut(s)	63, 143, 496
BtsCI	GGATG	1 cut(s)	584
BtsIMutI	CAGTG	1 cut(s)	485
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	294, 669
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	3 cut(s)	234, 475, 571
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	5 cut(s)	25, 227, 509, 668, 692
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	4 cut(s)	65, 408, 417, 583
DpnI	GATC	5 cut(s)	154, 206, 215, 405, 562
DpnII	GATC	5 cut(s)	152, 204, 213, 403, 560
EaeI	YGGCCR	1 cut(s)	494
Eam1104I	CTCTTC	4 cut(s)	312, 456, 528, 690
EarI	CTCTTC	4 cut(s)	312, 456, 528, 690
Eco130I	CCWWGG	2 cut(s)	198, 574
Eco24I	GRGCYC	2 cut(s)	326, 451
Eco47I	GGWCC	3 cut(s)	234, 475, 571
Eco57I	CTGAAG	2 cut(s)	509, 552
EcoO109I	RGGNCCY	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	198, 574
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	2 cut(s)	326, 451
ErhI	CCWWGG	2 cut(s)	198, 574
FaeI	CATG	5 cut(s)	28, 230, 512, 671, 695
FaiI	YATR	9 cut(s)	26, 228, 510, 519, 521, 566, 654, 669, 693
FaqI	GGGAC	2 cut(s)	519, 584
FatI	CATG	5 cut(s)	24, 226, 508, 667, 691
FauNDI	CATATG	1 cut(s)	519
Fnu4HI	GCNGC	2 cut(s)	102, 494
FokI	GGATG	1 cut(s)	591
FriOI	GRGCYC	2 cut(s)	326, 451
Fsp4HI	GCNGC	2 cut(s)	102, 494
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	2 cut(s)	102, 494
HaeIII	GGCC	3 cut(s)	63, 143, 496
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	5 cut(s)	28, 230, 512, 671, 695
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	2 cut(s)	223, 592
HindII	GTYRAC	2 cut(s)	223, 592
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	2 cut(s)	282, 632
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	355, 650
Hpy166II	GTNNAC	3 cut(s)	223, 475, 592
Hpy188I	TCNGA	7 cut(s)	7, 43, 86, 234, 279, 418, 586
Hpy188III	TCNNGA	2 cut(s)	286, 432
Hpy8I	GTNNAC	3 cut(s)	223, 475, 592
HpyAV	CCTTC	2 cut(s)	334, 607
HpyCH4V	TGCA	3 cut(s)	311, 485, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 536
HpyF3I	CTNAG	4 cut(s)	65, 408, 417, 583
Hsp92II	CATG	5 cut(s)	28, 230, 512, 671, 695
HspAI	GCGC	1 cut(s)	539
KpnI	GGTACC	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	152, 204, 213, 403, 560
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	98, 280
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	1 cut(s)	524
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	5 cut(s)	154, 206, 215, 405, 562
MboI	GATC	5 cut(s)	152, 204, 213, 403, 560
MboII	GAAGA	5 cut(s)	329, 379, 443, 545, 613
MflI	RGATCY	3 cut(s)	204, 403, 560
MhlI	GDGCHC	4 cut(s)	24, 326, 439, 451
MluCI	AATT	2 cut(s)	346, 542
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	8 cut(s)	47, 61, 154, 282, 307, 435, 438, 529
Mph1103I	ATGCAT	1 cut(s)	669
MseI	TTAA	2 cut(s)	363, 441
MspCI	CTTAAG	2 cut(s)	362, 440
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	2 cut(s)	209, 272
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	298, 536
NciI	CCSGG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	519
NdeII	GATC	5 cut(s)	152, 204, 213, 403, 560
NlaIII	CATG	5 cut(s)	28, 230, 512, 671, 695
NlaIV	GGNNCC	8 cut(s)	45, 100, 236, 276, 335, 405, 477, 572
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	2 cut(s)	512, 671
PaeI	GCATGC	1 cut(s)	671
PciI	ACATGT	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	456
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	2 cut(s)	282, 632
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	103, 495
PpuMI	RGGWCCY	1 cut(s)	571
PscI	ACATGT	1 cut(s)	508
PshAI	GACNNNNGTC	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	8 cut(s)	45, 100, 236, 276, 335, 405, 477, 572
PspPI	GGNCC	3 cut(s)	234, 475, 571
PspPPI	RGGWCCY	1 cut(s)	571
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	3 cut(s)	204, 403, 560
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	363, 441
SatI	GCNGC	2 cut(s)	102, 494
Sau3AI	GATC	5 cut(s)	152, 204, 213, 403, 560
Sau96I	GGNCC	3 cut(s)	234, 475, 571
ScrFI	CCNGG	2 cut(s)	209, 272
SduI	GDGCHC	4 cut(s)	24, 326, 439, 451
SfaNI	GCATC	1 cut(s)	569
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	3 cut(s)	234, 475, 571
SmlI	CTYRAG	3 cut(s)	302, 362, 440
SmoI	CTYRAG	3 cut(s)	302, 362, 440
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	2 cut(s)	346, 542
SsiI	CCGC	2 cut(s)	102, 493
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	207, 270
StyI	CCWWGG	2 cut(s)	198, 574
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	346, 542
TauI	GCSGC	2 cut(s)	104, 496
TfiI	GAWTC	2 cut(s)	282, 632
Tru1I	TTAA	2 cut(s)	363, 441
Tru9I	TTAA	2 cut(s)	363, 441
TscAI	CASTG	1 cut(s)	492
TspDTI	ATGAA	3 cut(s)	41, 506, 669
TspRI	CASTG	1 cut(s)	492
Vha464I	CTTAAG	2 cut(s)	362, 440
VpaK11BI	GGWCC	3 cut(s)	234, 475, 571
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	2 cut(s)	512, 671
XspI	CTAG	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.