Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019821

Physical Location & Seq

Genomic Coordinates Forward (+)

75764801 .. 75767613

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTGAATGAGAGAAGTGATGTGTATAGCTTTGGGATTCTTATCATGGAGATAATATCTGGGAGGAATCCAGTTGATTATAGCCAGCCTCCCGGAGAGGTGAACTTAGTTGAGTGGCTTAAGAAGATGGTTGCTAACAGAGAACCAGAGAAAGTATTGGATCCTAAGTTATCTGAGAAACCTCGTTCCAGAGCACTTAAGAGGGCTCTTCTTGTAGCTTTGAAGTGTGTGGACCCAAATGCACTGAAGCGGCCAAAAATGGGACATGTTGTTCATATGCTAGAAGCTGAAGAGGCGCAATTCAAAGATGATGGGAGATCTATAAGGGACCTTGGATGCTCAGATGTTGACAATGTGAAGAATGGGTTGAAGGAAAAGCAGGTAACAGAATCAGGTGATAGTAGCAGATATGAAAATGGAATGCATGCCGATAAGACAAGACAGAGACATGAAGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

153

Amino Acids

17.41

Weight (kDa)

7.77

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019821)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g12980
rosa_roxburghii	Rroxscaffold_2G00137730
rosa_samantha	Rh1AG269000 Rh1CG252700 Rh1DG264000 Rh2BG192400 Rh2DG188900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	155, 168
AcoI	YGGCCR	1 cut(s)	251
AcuI	CTGAAG	2 cut(s)	266, 309
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflII	CTTAAG	2 cut(s)	119, 197
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	7, 223, 304, 370
AloI	GAACNNNNNNTCC	2 cut(s)	255, 287
AluBI	AGCT	3 cut(s)	30, 218, 287
AluI	AGCT	3 cut(s)	30, 218, 287
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	155, 168
AoxI	GGCC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	232, 328
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	112, 407
AvaII	GGWCC	2 cut(s)	232, 328
BamHI	GGATCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	196
BccI	CCATC	2 cut(s)	121, 305
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	1 cut(s)	281
BfrI	CTTAAG	2 cut(s)	119, 197
BfuAI	ACCTGC	1 cut(s)	370
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	2 cut(s)	232, 328
BmgT120I	GGNCC	2 cut(s)	232, 328
BmiI	GGNNCC	3 cut(s)	162, 234, 329
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	71
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	341
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	2 cut(s)	165, 354
BseNI	ACTGG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	276, 341
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	439
BsmFI	GGGAC	2 cut(s)	276, 341
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	196, 208
Bsp143I	GATC	2 cut(s)	160, 317
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	2 cut(s)	166, 353
BspLI	GGNNCC	3 cut(s)	162, 234, 329
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	2 cut(s)	155, 168
BspQI	GCTCTTC	1 cut(s)	213
BspTI	CTTAAG	2 cut(s)	119, 197
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	2 cut(s)	160, 317
BssT1I	CCWWGG	1 cut(s)	331
Bst6I	CTCTTC	3 cut(s)	213, 285, 447
BstAFI	CTTAAG	2 cut(s)	119, 197
BstC8I	GCNNGC	2 cut(s)	86, 426
BstDEI	CTNAG	4 cut(s)	106, 165, 174, 340
BstF5I	GGATG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	2 cut(s)	163, 320
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	2 cut(s)	160, 317
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	2 cut(s)	269, 428
BstSCI	CCNGG	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	160, 317
BstYI	RGATCY	2 cut(s)	160, 317
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	86, 426
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	232, 328
CviAII	CATG	4 cut(s)	46, 266, 425, 449
CviJI	RGCY	8 cut(s)	30, 84, 88, 118, 206, 218, 253, 287
CviKI_1	RGCY	8 cut(s)	30, 84, 88, 118, 206, 218, 253, 287
DdeI	CTNAG	4 cut(s)	106, 165, 174, 340
DpnI	GATC	2 cut(s)	162, 319
DpnII	GATC	2 cut(s)	160, 317
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	3 cut(s)	213, 285, 447
EarI	CTCTTC	3 cut(s)	213, 285, 447
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	232, 328
Eco57I	CTGAAG	2 cut(s)	266, 309
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	4 cut(s)	49, 269, 428, 452
FaqI	GGGAC	2 cut(s)	276, 341
FatI	CATG	4 cut(s)	45, 265, 424, 448
FauNDI	CATATG	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	348
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	4 cut(s)	49, 269, 428, 452
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	37, 67, 389
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	112, 407
Hpy166II	GTNNAC	3 cut(s)	103, 232, 349
Hpy188I	TCNGA	2 cut(s)	175, 343
Hpy188III	TCNNGA	1 cut(s)	189
Hpy8I	GTNNAC	3 cut(s)	103, 232, 349
HpyAV	CCTTC	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	242, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	106, 165, 174, 340
Hsp92II	CATG	4 cut(s)	49, 269, 428, 452
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	160, 317
LguI	GCTCTTC	1 cut(s)	213
LpnPI	CCDG	8 cut(s)	45, 84, 98, 106, 159, 202, 365, 378
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	162, 319
MboI	GATC	2 cut(s)	160, 317
MboII	GAAGA	4 cut(s)	136, 200, 302, 370
MflI	RGATCY	2 cut(s)	160, 317
MhlI	GDGCHC	2 cut(s)	196, 208
MluCI	AATT	1 cut(s)	299
MnlI	CCTC	6 cut(s)	57, 91, 99, 192, 195, 286
Mph1103I	ATGCAT	1 cut(s)	426
MseI	TTAA	2 cut(s)	120, 198
MspCI	CTTAAG	2 cut(s)	119, 197
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	2 cut(s)	160, 317
NlaIII	CATG	4 cut(s)	49, 269, 428, 452
NlaIV	GGNNCC	3 cut(s)	162, 234, 329
NsiI	ATGCAT	1 cut(s)	426
NspI	RCATGY	2 cut(s)	269, 428
PaeI	GCATGC	1 cut(s)	428
PciI	ACATGT	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	213
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	37, 67, 389
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	252
PpuMI	RGGWCCY	1 cut(s)	328
PscI	ACATGT	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	162, 234, 329
PspPI	GGNCC	2 cut(s)	232, 328
PspPPI	RGGWCCY	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	160, 317
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	120, 198
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	2 cut(s)	160, 317
Sau96I	GGNCC	2 cut(s)	232, 328
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	2 cut(s)	196, 208
SetI	ASST	8 cut(s)	32, 102, 184, 220, 289, 333, 384, 397
SfaNI	GCATC	1 cut(s)	326
SinI	GGWCC	2 cut(s)	232, 328
SmlI	CTYRAG	2 cut(s)	119, 197
SmoI	CTYRAG	2 cut(s)	119, 197
SphI	GCATGC	1 cut(s)	428
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	331
TasI	AATT	1 cut(s)	299
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	3 cut(s)	37, 67, 389
Tru1I	TTAA	2 cut(s)	120, 198
Tru9I	TTAA	2 cut(s)	120, 198
TscAI	CASTG	1 cut(s)	249
TspDTI	ATGAA	2 cut(s)	263, 426
TspRI	CASTG	1 cut(s)	249
Vha464I	CTTAAG	2 cut(s)	119, 197
VpaK11BI	GGWCC	2 cut(s)	232, 328
XceI	RCATGY	2 cut(s)	269, 428
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.