Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0019821

Physical Location & Seq

Genomic Coordinates Reverse (-)

51592114 .. 51594798

Gene Structure 2685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTCAGTGTACGATGCGGCGTTCGTGAACTCGGAGCTCTCGAAACCCACTTCCATCTTCGGCCTCCATCTCTGGGTCGTCATCGGAATCCTCGTCGGCTCTCTGATAGTCCTGACCCTCTTCCTCCTCTCCCTCTGCCTCACCGCCCGCCACCGCCACAAGGCCCACAAAGCCCACAACCCCAACAAGCTCGCCGCCTTGCCCAGCCCAGTAATCTCTAAAGAAATCCAGGAAATCGTCCACCACCCCAACCACTCCCAGCCAGAAGTCCACGTCGAGATCGGGAAGCCCGACCACCGCGTCGTCGTGTTCTCCGACCGCGTCTCCAGCGGCGAGAGCAGGGCCACCTTGAACAGCGAAACGGTGTCGTTTGCAAGCGGCAACGTGGTGAATCTAGTTGAATGGTTAAAAAACATGGTTGGAGACCGAAAATCTGAGGAAGTAGTTGATCCTAAGTTGCCTGAGATGCCTGCTTCAAAAGCACTTAAACGTGCTCTGCTGGTTGCTCTTCGATGTGTTGATCCTGATGCCACAAAAAGGCCAAAAATGGGACATGTGATCCACATGCTGGAGGCTGATGACTTGCTATTCCGTGATGAAAGGCGACCAGGGAGAGATACATCCCGTTCAGATCCCGATTATCGACGGGAGAATCATGTTGGTATGAAGATGGGTGATAAAGATAAACACTTGAGTGAAGGGACTTCCGATACTAGTGAAGGTGATAGTGGTAGGAACCATAATCAACCTACAAGGTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

254

Amino Acids

28.4

Weight (kDa)

8.52

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019821)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g12980
rosa_roxburghii	Rroxscaffold_2G00137730
rosa_samantha	Rh1AG269000 Rh1CG252700 Rh1DG264000 Rh2BG192400 Rh2DG188900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccII	CGCG	2 cut(s)	300, 321
AciI	CCGC	9 cut(s)	17, 144, 148, 154, 195, 298, 319, 330, 378
AclWI	GGATC	4 cut(s)	443, 515, 553, 626
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	5 cut(s)	73, 160, 537, 548, 568
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	3 cut(s)	352, 401, 477
AhlI	ACTAGT	1 cut(s)	713
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	228, 607
AleI	CACNNNNGTG	1 cut(s)	693
AluBI	AGCT	2 cut(s)	37, 190
AluI	AGCT	2 cut(s)	37, 190
Alw21I	GWGCWC	2 cut(s)	39, 496
Alw26I	GTCTC	2 cut(s)	328, 417
AlwI	GGATC	4 cut(s)	443, 515, 553, 626
AoxI	GGCC	4 cut(s)	61, 162, 342, 539
AspS9I	GGNCC	2 cut(s)	163, 342
AsuHPI	GGTGA	4 cut(s)	133, 400, 686, 734
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	2 cut(s)	39, 496
BccI	CCATC	3 cut(s)	62, 75, 664
BciT130I	CCWGG	2 cut(s)	230, 609
BcoDI	GTCTC	2 cut(s)	328, 417
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	2 cut(s)	395, 714
BisI	GCNGC	4 cut(s)	18, 195, 331, 379
BlsI	GCNGC	4 cut(s)	19, 196, 332, 380
Bme1390I	CCNGG	2 cut(s)	230, 609
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	163, 342
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	2 cut(s)	230, 609
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	3 cut(s)	4, 456, 517
BmuI	ACTGGG	1 cut(s)	203
BpmI	CTGGAG	2 cut(s)	310, 590
BpuEI	CTTGAG	1 cut(s)	712
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 160, 537, 548, 568
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	2 cut(s)	230, 609
BseDI	CCNNGG	1 cut(s)	608
BseGI	GGATG	1 cut(s)	620
BseLI	CCNNNNNNNGG	5 cut(s)	73, 160, 537, 548, 568
BseMII	CTCAG	2 cut(s)	426, 453
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	116
BseYI	CCCAGC	2 cut(s)	203, 258
Bsh1236I	CGCG	2 cut(s)	300, 321
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	4 cut(s)	63, 164, 344, 541
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	39, 496
BslFI	GGGAC	2 cut(s)	564, 715
BslI	CCNNNNNNNGG	5 cut(s)	73, 160, 537, 548, 568
BsmAI	GTCTC	2 cut(s)	328, 417
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	564, 715
BsnI	GGCC	4 cut(s)	63, 164, 344, 541
Bso31I	GGTCTC	1 cut(s)	417
Bsp1286I	GDGCHC	2 cut(s)	39, 496
Bsp143I	GATC	5 cut(s)	279, 448, 520, 558, 631
BspACI	CCGC	9 cut(s)	17, 144, 148, 154, 195, 298, 319, 330, 378
BspANI	GGCC	4 cut(s)	63, 164, 344, 541
BspCNI	CTCAG	2 cut(s)	427, 454
BspFNI	CGCG	2 cut(s)	300, 321
BspLI	GGNNCC	1 cut(s)	737
BspPI	GGATC	4 cut(s)	443, 515, 553, 626
BspQI	GCTCTTC	1 cut(s)	513
BspTNI	GGTCTC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	608
BssMI	GATC	5 cut(s)	279, 448, 520, 558, 631
Bst2UI	CCWGG	2 cut(s)	230, 609
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	2 cut(s)	125, 513
BstC8I	GCNNGC	4 cut(s)	148, 192, 376, 471
BstDEI	CTNAG	3 cut(s)	435, 453, 462
BstF5I	GGATG	1 cut(s)	620
BstFNI	CGCG	2 cut(s)	300, 321
BstKTI	GATC	5 cut(s)	282, 451, 523, 561, 634
BstMAI	GTCTC	2 cut(s)	328, 417
BstMBI	GATC	5 cut(s)	279, 448, 520, 558, 631
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 327, 336, 466, 479
BstNI	CCWGG	2 cut(s)	230, 609
BstNSI	RCATGY	2 cut(s)	557, 568
BstSCI	CCNGG	2 cut(s)	228, 607
BstUI	CGCG	2 cut(s)	300, 321
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	4 cut(s)	63, 164, 344, 541
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	620
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	4 cut(s)	148, 192, 376, 471
Cfr13I	GGNCC	2 cut(s)	163, 342
CseI	GACGC	2 cut(s)	289, 310
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	4 cut(s)	415, 554, 565, 656
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	435, 453, 462
DpnI	GATC	5 cut(s)	281, 450, 522, 560, 633
DpnII	GATC	5 cut(s)	279, 448, 520, 558, 631
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	2 cut(s)	125, 513
EarI	CTCTTC	2 cut(s)	125, 513
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	228, 607
EcoT38I	GRGCYC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	4 cut(s)	418, 557, 568, 659
FaiI	YATR	6 cut(s)	416, 555, 566, 657, 665, 741
FaqI	GGGAC	2 cut(s)	564, 715
FatI	CATG	4 cut(s)	414, 553, 564, 655
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	4 cut(s)	18, 195, 331, 379
FokI	GGATG	1 cut(s)	607
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	18, 195, 331, 379
FspBI	CTAG	2 cut(s)	395, 714
GluI	GCNGC	4 cut(s)	18, 195, 331, 379
GsaI	CCCAGC	2 cut(s)	207, 262
GsuI	CTGGAG	2 cut(s)	310, 590
HaeIII	GGCC	4 cut(s)	63, 164, 344, 541
HgaI	GACGC	2 cut(s)	289, 310
Hin1II	CATG	4 cut(s)	418, 557, 568, 659
HinfI	GANTC	3 cut(s)	87, 391, 652
HphI	GGTGA	4 cut(s)	133, 400, 686, 734
Hpy166II	GTNNAC	4 cut(s)	10, 28, 241, 271
Hpy188I	TCNGA	7 cut(s)	34, 86, 105, 316, 436, 631, 709
Hpy188III	TCNNGA	7 cut(s)	25, 40, 112, 277, 283, 524, 635
Hpy8I	GTNNAC	4 cut(s)	10, 28, 241, 271
Hpy99I	CGWCG	5 cut(s)	98, 278, 305, 308, 648
HpyAV	CCTTC	2 cut(s)	692, 713
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	3 cut(s)	273, 384, 490
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 327, 336, 466, 479
HpyF3I	CTNAG	3 cut(s)	435, 453, 462
HpySE526I	ACGT	3 cut(s)	273, 384, 490
Hsp92II	CATG	4 cut(s)	418, 557, 568, 659
Kzo9I	GATC	5 cut(s)	279, 448, 520, 558, 631
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	1 cut(s)	34
LweI	GCATC	3 cut(s)	4, 456, 517
MaeI	CTAG	2 cut(s)	395, 714
MaeII	ACGT	3 cut(s)	273, 384, 490
MalI	GATC	5 cut(s)	281, 450, 522, 560, 633
MboI	GATC	5 cut(s)	279, 448, 520, 558, 631
MboII	GAAGA	4 cut(s)	49, 112, 500, 679
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	2 cut(s)	39, 496
MmeI	TCCRAC	2 cut(s)	339, 400
MnlI	CCTC	9 cut(s)	74, 101, 128, 134, 137, 143, 149, 430, 565
MseI	TTAA	2 cut(s)	407, 486
MslI	CAYNNNNRTG	1 cut(s)	693
MspA1I	CMGCKG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	230, 609
MvaI	CCWGG	2 cut(s)	230, 609
MvnI	CGCG	2 cut(s)	300, 321
MwoI	GCNNNNNNNGC	5 cut(s)	170, 327, 336, 466, 479
NdeII	GATC	5 cut(s)	279, 448, 520, 558, 631
NlaIII	CATG	4 cut(s)	418, 557, 568, 659
NlaIV	GGNNCC	1 cut(s)	737
NspI	RCATGY	2 cut(s)	557, 568
OliI	CACNNNNGTG	1 cut(s)	693
PciI	ACATGT	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	4 cut(s)	38, 90, 288, 312
PfeI	GAWTC	3 cut(s)	87, 391, 652
PflFI	GACNNNGTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	568
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	19, 196, 332, 380
PscI	ACATGT	1 cut(s)	553
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	2 cut(s)	228, 607
PspFI	CCCAGC	2 cut(s)	203, 258
PspGI	CCWGG	2 cut(s)	228, 607
PspN4I	GGNNCC	1 cut(s)	737
PspPI	GGNCC	2 cut(s)	163, 342
PsuI	RGATCY	1 cut(s)	631
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	407, 486
SatI	GCNGC	4 cut(s)	18, 195, 331, 379
Sau3AI	GATC	5 cut(s)	279, 448, 520, 558, 631
Sau96I	GGNCC	2 cut(s)	163, 342
ScrFI	CCNGG	2 cut(s)	230, 609
SduI	GDGCHC	2 cut(s)	39, 496
SetI	ASST	9 cut(s)	39, 192, 276, 350, 387, 493, 724, 751, 758
SfaNI	GCATC	3 cut(s)	4, 456, 517
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	691
SmoI	CTYRAG	1 cut(s)	691
SpeI	ACTAGT	1 cut(s)	713
SsiI	CCGC	9 cut(s)	17, 144, 148, 154, 195, 298, 319, 330, 378
SspMI	CTAG	2 cut(s)	395, 714
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	228, 607
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	3 cut(s)	276, 387, 493
TaqI	TCGA	4 cut(s)	41, 276, 511, 643
TaqII	GACCGA	1 cut(s)	441
TauI	GCSGC	4 cut(s)	20, 197, 333, 381
TfiI	GAWTC	3 cut(s)	87, 391, 652
Tru1I	TTAA	2 cut(s)	407, 486
Tru9I	TTAA	2 cut(s)	407, 486
TscAI	CASTG	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	612, 680
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	1 cut(s)	12
Tth111I	GACNNNGTC	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	568
XceI	RCATGY	2 cut(s)	557, 568
XspI	CTAG	2 cut(s)	395, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.