Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019821

Physical Location & Seq

Genomic Coordinates Reverse (-)

49600691 .. 49603379

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG269000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCAGTGTACGACGCGGCGTTCGTGAACTCGGAGCTCTCGAAACCCACTTCCATCTTCGGCCTCCATCTCTGGGTCGTCATCGGAATCCTCGTCGGCTCTCTGATAGTCCTGACCCTCTTCCTCCTCTCCCTCTGCCTCACCGCCCGCCACCGCCACAAGGCCCACAAAGCCCACAACCCCAACAAGCTCGCCGCCGTGCCCAGCCCAGTAATCTCTAAAGAAATCCAGGAAATCGTCCACCACCCCAACCAGTCCCAGCCGGAAGTCCACGTCGAGATCGGGAAGCCCGACCACCGCGTCGTCGTGTTCTCCGACCGCGCCTCCAGCGGCGAGAGCAGGGCCACCAGCGAAACGGTGTCGTTTGCGAGCGGCAACGTGGTGAATCTAGTTGAATGGTTAAAAAACATGGTTGGAGACCGAAAAGCTGAGGAAGTAGTTGATCCTAAGTTGCCTGAGATGCCTGCTTCAAAAGCACTTAAACGTGCTCTGCTGGTTGCTCTTCGATGTGTTGATCCTGATGCCACAAAAAGGCCAAGAATGGGACATGTGATCCACATGCTGGAGGCTGATGACTTGCTATTCCGTGATGAAAGGCGACCAGGGAGAGATACATCCCGTTCAGATCCCGATTATCGACGGGAGAATCATGTTGGTATGAAGATGGGTGATAAAGATAAACACTTGAGTGAAGGGACTTCCGATACTAGTGAAGGTGATAGTGGTAGGAACCATAATCAACCTACAAGGTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

252

Amino Acids

28.13

Weight (kDa)

8.53

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019821)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g12980
rosa_roxburghii	Rroxscaffold_2G00137730
rosa_samantha	Rh1AG269000 Rh1CG252700 Rh1DG264000 Rh2BG192400 Rh2DG188900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccBSI	CCGCTC	1 cut(s)	372
AccII	CGCG	3 cut(s)	17, 300, 321
AciI	CCGC	9 cut(s)	17, 144, 148, 154, 195, 298, 319, 330, 372
AclWI	GGATC	4 cut(s)	437, 509, 547, 620
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	5 cut(s)	73, 160, 531, 542, 562
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	2 cut(s)	395, 471
AhlI	ACTAGT	1 cut(s)	707
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	228, 601
AleI	CACNNNNGTG	1 cut(s)	687
AluBI	AGCT	3 cut(s)	37, 190, 428
AluI	AGCT	3 cut(s)	37, 190, 428
Alw21I	GWGCWC	2 cut(s)	39, 490
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	4 cut(s)	437, 509, 547, 620
AoxI	GGCC	4 cut(s)	61, 162, 342, 533
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	163, 342
AsuHPI	GGTGA	4 cut(s)	133, 394, 680, 728
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	2 cut(s)	39, 490
BbvCI	CCTCAGC	1 cut(s)	429
BccI	CCATC	3 cut(s)	62, 75, 658
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	230, 603
BcoDI	GTCTC	1 cut(s)	411
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	2 cut(s)	389, 708
BisI	GCNGC	4 cut(s)	18, 195, 331, 373
BlsI	GCNGC	4 cut(s)	19, 196, 332, 374
Bme1390I	CCNGG	2 cut(s)	230, 603
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	163, 342
BmiI	GGNNCC	1 cut(s)	731
BmrFI	CCNGG	2 cut(s)	230, 603
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	450, 511
BmuI	ACTGGG	1 cut(s)	203
BpmI	CTGGAG	2 cut(s)	310, 584
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	706
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	602
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 160, 531, 542, 562
Bse1I	ACTGG	2 cut(s)	209, 253
BseBI	CCWGG	2 cut(s)	230, 603
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	1 cut(s)	614
BseLI	CCNNNNNNNGG	5 cut(s)	73, 160, 531, 542, 562
BseMII	CTCAG	2 cut(s)	420, 447
BseNI	ACTGG	2 cut(s)	209, 253
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	204
BseYI	CCCAGC	2 cut(s)	203, 258
Bsh1236I	CGCG	3 cut(s)	17, 300, 321
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	4 cut(s)	63, 164, 344, 535
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	39, 490
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	3 cut(s)	241, 558, 709
BslI	CCNNNNNNNGG	5 cut(s)	73, 160, 531, 542, 562
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	3 cut(s)	241, 558, 709
BsnI	GGCC	4 cut(s)	63, 164, 344, 535
Bso31I	GGTCTC	1 cut(s)	411
Bsp1286I	GDGCHC	3 cut(s)	39, 204, 490
Bsp143I	GATC	5 cut(s)	279, 442, 514, 552, 625
BspACI	CCGC	9 cut(s)	17, 144, 148, 154, 195, 298, 319, 330, 372
BspANI	GGCC	4 cut(s)	63, 164, 344, 535
BspCNI	CTCAG	2 cut(s)	421, 448
BspFNI	CGCG	3 cut(s)	17, 300, 321
BspLI	GGNNCC	1 cut(s)	731
BspPI	GGATC	4 cut(s)	437, 509, 547, 620
BspQI	GCTCTTC	1 cut(s)	507
BspTNI	GGTCTC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	209, 253
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	5 cut(s)	279, 442, 514, 552, 625
Bst2UI	CCWGG	2 cut(s)	230, 603
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	125, 507
BstC8I	GCNNGC	4 cut(s)	148, 192, 370, 465
BstDEI	CTNAG	3 cut(s)	429, 447, 456
BstF5I	GGATG	1 cut(s)	614
BstFNI	CGCG	3 cut(s)	17, 300, 321
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	5 cut(s)	282, 445, 517, 555, 628
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	5 cut(s)	279, 442, 514, 552, 625
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 327, 336, 460, 473
BstNI	CCWGG	2 cut(s)	230, 603
BstNSI	RCATGY	2 cut(s)	551, 562
BstSCI	CCNGG	2 cut(s)	228, 601
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	3 cut(s)	17, 300, 321
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	4 cut(s)	63, 164, 344, 535
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	614
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	4 cut(s)	148, 192, 370, 465
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	2 cut(s)	163, 342
CseI	GACGC	2 cut(s)	23, 289
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	4 cut(s)	409, 548, 559, 650
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	429, 447, 456
DpnI	GATC	5 cut(s)	281, 444, 516, 554, 627
DpnII	GATC	5 cut(s)	279, 442, 514, 552, 625
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	2 cut(s)	125, 507
EarI	CTCTTC	2 cut(s)	125, 507
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	228, 601
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	4 cut(s)	412, 551, 562, 653
FaiI	YATR	6 cut(s)	410, 549, 560, 651, 659, 735
FaqI	GGGAC	3 cut(s)	241, 558, 709
FatI	CATG	4 cut(s)	408, 547, 558, 649
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	4 cut(s)	18, 195, 331, 373
FokI	GGATG	1 cut(s)	601
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	18, 195, 331, 373
FspBI	CTAG	2 cut(s)	389, 708
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	4 cut(s)	18, 195, 331, 373
GsaI	CCCAGC	2 cut(s)	207, 262
GsuI	CTGGAG	2 cut(s)	310, 584
HaeIII	GGCC	4 cut(s)	63, 164, 344, 535
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	2 cut(s)	23, 289
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	4 cut(s)	412, 551, 562, 653
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	87, 385, 646
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	4 cut(s)	133, 394, 680, 728
Hpy166II	GTNNAC	4 cut(s)	10, 28, 241, 271
Hpy188I	TCNGA	6 cut(s)	34, 86, 105, 316, 625, 703
Hpy188III	TCNNGA	7 cut(s)	25, 40, 112, 277, 283, 518, 629
Hpy8I	GTNNAC	4 cut(s)	10, 28, 241, 271
Hpy99I	CGWCG	6 cut(s)	17, 98, 278, 305, 308, 642
HpyAV	CCTTC	2 cut(s)	686, 707
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	3 cut(s)	273, 378, 484
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 327, 336, 460, 473
HpyF3I	CTNAG	3 cut(s)	429, 447, 456
HpySE526I	ACGT	3 cut(s)	273, 378, 484
Hsp92II	CATG	4 cut(s)	412, 551, 562, 653
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	5 cut(s)	279, 442, 514, 552, 625
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	34
LweI	GCATC	2 cut(s)	450, 511
MaeI	CTAG	2 cut(s)	389, 708
MaeII	ACGT	3 cut(s)	273, 378, 484
MalI	GATC	5 cut(s)	281, 444, 516, 554, 627
MbiI	CCGCTC	1 cut(s)	372
MboI	GATC	5 cut(s)	279, 442, 514, 552, 625
MboII	GAAGA	4 cut(s)	49, 112, 494, 673
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	3 cut(s)	39, 204, 490
MmeI	TCCRAC	2 cut(s)	339, 394
MseI	TTAA	2 cut(s)	401, 480
MslI	CAYNNNNRTG	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	230, 603
MvaI	CCWGG	2 cut(s)	230, 603
MvnI	CGCG	3 cut(s)	17, 300, 321
MwoI	GCNNNNNNNGC	5 cut(s)	170, 327, 336, 460, 473
NdeII	GATC	5 cut(s)	279, 442, 514, 552, 625
NlaIII	CATG	4 cut(s)	412, 551, 562, 653
NlaIV	GGNNCC	1 cut(s)	731
NspI	RCATGY	2 cut(s)	551, 562
OliI	CACNNNNGTG	1 cut(s)	687
PciI	ACATGT	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	5 cut(s)	21, 38, 90, 288, 312
PfeI	GAWTC	3 cut(s)	87, 385, 646
PflMI	CCANNNNNTGG	1 cut(s)	562
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	19, 196, 332, 374
PscI	ACATGT	1 cut(s)	547
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	2 cut(s)	228, 601
PspFI	CCCAGC	2 cut(s)	203, 258
PspGI	CCWGG	2 cut(s)	228, 601
PspN4I	GGNNCC	1 cut(s)	731
PspPI	GGNCC	2 cut(s)	163, 342
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	687
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	401, 480
SatI	GCNGC	4 cut(s)	18, 195, 331, 373
Sau3AI	GATC	5 cut(s)	279, 442, 514, 552, 625
Sau96I	GGNCC	2 cut(s)	163, 342
ScrFI	CCNGG	2 cut(s)	230, 603
SduI	GDGCHC	3 cut(s)	39, 204, 490
SetI	ASST	9 cut(s)	39, 192, 276, 381, 430, 487, 718, 745, 752
SfaNI	GCATC	2 cut(s)	450, 511
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
SpeI	ACTAGT	1 cut(s)	707
SsiI	CCGC	9 cut(s)	17, 144, 148, 154, 195, 298, 319, 330, 372
SspMI	CTAG	2 cut(s)	389, 708
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	228, 601
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	3 cut(s)	276, 381, 487
TaqI	TCGA	4 cut(s)	41, 276, 505, 637
TaqII	GACCGA	1 cut(s)	435
TauI	GCSGC	4 cut(s)	20, 197, 333, 375
TfiI	GAWTC	3 cut(s)	87, 385, 646
Tru1I	TTAA	2 cut(s)	401, 480
Tru9I	TTAA	2 cut(s)	401, 480
TscAI	CASTG	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	606, 674
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	1 cut(s)	562
XceI	RCATGY	2 cut(s)	551, 562
XspI	CTAG	2 cut(s)	389, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.