Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0019821

Physical Location & Seq

Genomic Coordinates Reverse (-)

48130292 .. 48130734

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG264000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTTGGAGACCGAAAAGCTGAGGAAGTAGTTGATCCTAAGTTGCCTGAGATGCCTGCTTCAAAAGCACTTAAACGTGCTCTGCTGGTTGCTCTTCGATGTGTTGATCCTGATGCCACAAAAAGGCCAAAAATGGGACATGTGATCCACATGCTGGAGGCTGATGACTTGCTATTCCGTGAAGAAAGGCGACCAGGGAGAGATACATCCCGTTCAGATCCCGATTATCGACGGGAGAATCATGTTGGTATGAAGATGGGTGATAAAGATAAACACTTGAGTGAAGGGACTTCCGATACTAGTGAAGGTGACAGTGGTAGGAACCATAATCAACCTACAAGGTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

116

Amino Acids

13.23

Weight (kDa)

7.93

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019821)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g12980
rosa_roxburghii	Rroxscaffold_2G00137730
rosa_samantha	Rh1AG269000 Rh1CG252700 Rh1DG264000 Rh2BG192400 Rh2DG188900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AclWI	GGATC	4 cut(s)	29, 101, 139, 212
AfiI	CCNNNNNNNGG	3 cut(s)	123, 134, 154
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	63
AhlI	ACTAGT	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	193
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	4 cut(s)	29, 101, 139, 212
AoxI	GGCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	272, 320
Bbv12I	GWGCWC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	42, 103
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 134, 154
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	3 cut(s)	123, 134, 154
BseMII	CTCAG	2 cut(s)	12, 39
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	150, 301
BslI	CCNNNNNNNGG	3 cut(s)	123, 134, 154
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	150, 301
BsnI	GGCC	1 cut(s)	127
Bso31I	GGTCTC	1 cut(s)	3
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	4 cut(s)	34, 106, 144, 217
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	13, 40
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	4 cut(s)	29, 101, 139, 212
BspQI	GCTCTTC	1 cut(s)	99
BspTNI	GGTCTC	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	4 cut(s)	34, 106, 144, 217
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	21, 39, 48
BstF5I	GGATG	1 cut(s)	206
BstKTI	GATC	4 cut(s)	37, 109, 147, 220
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	4 cut(s)	34, 106, 144, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 65
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	2 cut(s)	143, 154
BstSCI	CCNGG	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	57
CviAII	CATG	3 cut(s)	140, 151, 242
CviJI	RGCY	3 cut(s)	20, 127, 161
CviKI_1	RGCY	3 cut(s)	20, 127, 161
DdeI	CTNAG	3 cut(s)	21, 39, 48
DpnI	GATC	4 cut(s)	36, 108, 146, 219
DpnII	GATC	4 cut(s)	34, 106, 144, 217
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	3
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	3 cut(s)	143, 154, 245
FaiI	YATR	5 cut(s)	141, 152, 243, 251, 327
FaqI	GGGAC	2 cut(s)	150, 301
FatI	CATG	3 cut(s)	139, 150, 241
FokI	GGATG	1 cut(s)	193
FspBI	CTAG	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	143, 154, 245
HinfI	GANTC	1 cut(s)	238
HphI	GGTGA	2 cut(s)	272, 320
Hpy188I	TCNGA	2 cut(s)	217, 295
Hpy188III	TCNNGA	2 cut(s)	110, 221
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	2 cut(s)	278, 299
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 65
HpyF3I	CTNAG	3 cut(s)	21, 39, 48
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	3 cut(s)	143, 154, 245
Kzo9I	GATC	4 cut(s)	34, 106, 144, 217
LguI	GCTCTTC	1 cut(s)	99
LpnPI	CCDG	7 cut(s)	60, 69, 71, 123, 140, 180, 207
LweI	GCATC	2 cut(s)	42, 103
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	4 cut(s)	36, 108, 146, 219
MboI	GATC	4 cut(s)	34, 106, 144, 217
MboII	GAAGA	3 cut(s)	86, 194, 265
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	16, 151
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	52, 65
NdeII	GATC	4 cut(s)	34, 106, 144, 217
NlaIII	CATG	3 cut(s)	143, 154, 245
NlaIV	GGNNCC	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	2 cut(s)	143, 154
OliI	CACNNNNGTG	1 cut(s)	279
PciI	ACATGT	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	154
PscI	ACATGT	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	4 cut(s)	34, 106, 144, 217
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	5 cut(s)	22, 79, 310, 337, 344
SfaNI	GCATC	2 cut(s)	42, 103
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SpeI	ACTAGT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	97, 229
TaqII	GACCGA	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	154
XceI	RCATGY	2 cut(s)	143, 154
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.