pycom07g16670

Adaptor-related protein complex 5, beta 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011344
Physical Location & Seq
Forward (+)
19108862 .. 19109326
465 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16670.1

Sequence Viewer

Length: 465 bp
ATGACCGATAAGCCACCAGAAGCACCATCTCCGTCAACTCCGCCGTTGAGGCAACTCTCTCCCCAAGATTGGGAGTCGTTAATCGACGACTTCCAGCACGGCGGCGCACGCCAGGACAGATGGACCTCCGCTCAGCCGATACTCCTCTCCCTCCTCGACCAAGCCCTCTCCTCCATCGCCAAGCGCGACTTCCCCCTTAAACTCCACGTCATCACCTTCCTCGAGGAGTTCTCCGACCCGCTATTCTCCACTGCCATCGCTAACGACGCCGTTTCCGGACGCAAAGTTCTCCACCGCCTCATCGAAACCCTACGCGCCCTGATCCAGACACCGCCCGATGGGGTCCACATCACGTTCGCTCTCAAGGAGCAGATGATGCTTTCCGTCACCTCAGTCGTTGTCTCTCTCGACGACGACGTCGTTTCGATCGATCCACCGTCGAATCGCTGGTGGAGCTGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.17

Weight (kDa)

4.9

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19870 AT3G19870
fragaria_vesca FvH4_7g19060
malus_domestica MD01G1105900.v1.1 MD07G1172300.v1.1
prunus_persica Prupe.2G211300_v2.0.a1
pyrus_communis pycom01g13270 pycom07g16670 pycom07g16680
rosa_chinensis RchiOBHm_Chr1g0362961
rosa_laevigata RLG00000027607
rosa_multiflora Rmu_sc0000174.1_g000010
rosa_roxburghii Rroxscaffold_4G00293600
rosa_rugosa Rorug01G0302400
rosa_samantha Rh1AG311900 Rh1BG275100 Rh1CG292200 Rh1DG305800 Rh7CG217100
rosa_wichuraiana Rw1G027650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 416
AatII GACGTC 1 cut(s) 420
AbsI CCTCGAGG 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 2 cut(s) 186, 315
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 6 cut(s) 41, 102, 129, 239, 295, 332
AclWI GGATC 2 cut(s) 316, 425
AcyI GRCGYC 2 cut(s) 267, 417
AfiI CCNNNNNNNGG 3 cut(s) 69, 70, 338
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 1 cut(s) 456
AluI AGCT 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 2 cut(s) 316, 425
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 456
AspLEI GCGC 3 cut(s) 107, 186, 317
AspS9I GGNCC 2 cut(s) 123, 343
AsuHPI GGTGA 2 cut(s) 205, 379
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 123, 343
BbvI GCAGC 1 cut(s) 443
BccI CCATC 5 cut(s) 34, 114, 182, 263, 332
BceAI ACGGC 3 cut(s) 28, 115, 254
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 2 cut(s) 103, 457
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 2 cut(s) 104, 458
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 2 cut(s) 123, 343
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 123, 343
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 429
BsaHI GRCGYC 2 cut(s) 267, 417
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 1 cut(s) 445
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 70, 338
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 429
BseLI CCNNNNNNNGG 3 cut(s) 69, 70, 338
BseMII CTCAG 2 cut(s) 146, 405
BseRI GAGGAG 4 cut(s) 134, 143, 160, 239
BseXI GCAGC 1 cut(s) 443
Bsh1236I CGCG 2 cut(s) 186, 315
Bsh1285I CGRYCG 1 cut(s) 429
BshVI ATCGAT 1 cut(s) 429
BsiEI CGRYCG 1 cut(s) 429
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 3 cut(s) 69, 70, 338
BsmAI GTCTC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 221
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 3 cut(s) 321, 426, 430
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 6 cut(s) 41, 102, 129, 239, 295, 332
BspCNI CTCAG 2 cut(s) 145, 404
BspDI ATCGAT 1 cut(s) 429
BspEI TCCGGA 1 cut(s) 275
BspFNI CGCG 2 cut(s) 186, 315
BspLI GGNNCC 1 cut(s) 344
BspPI GGATC 2 cut(s) 316, 425
BsrBI CCGCTC 1 cut(s) 131
BssMI GATC 3 cut(s) 321, 426, 430
BssNI GRCGYC 2 cut(s) 267, 417
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 438
BstACI GRCGYC 2 cut(s) 267, 417
BstAPI GCANNNNNTGC 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 132, 391
BstFNI CGCG 2 cut(s) 186, 315
BstHHI GCGC 3 cut(s) 107, 186, 317
BstKTI GATC 3 cut(s) 324, 429, 433
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 3 cut(s) 321, 426, 430
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 5 cut(s) 49, 108, 266, 376, 453
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 2 cut(s) 186, 315
BstV1I GCAGC 1 cut(s) 443
Bsu15I ATCGAT 1 cut(s) 429
BsuTUI ATCGAT 1 cut(s) 429
BtgZI GCGATG 2 cut(s) 160, 241
BtrI CACGTC 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 3 cut(s) 107, 186, 317
Cfr13I GGNCC 2 cut(s) 123, 343
ClaI ATCGAT 1 cut(s) 429
CseI GACGC 2 cut(s) 275, 288
CviJI RGCY 4 cut(s) 13, 136, 164, 456
CviKI_1 RGCY 4 cut(s) 13, 136, 164, 456
DdeI CTNAG 2 cut(s) 132, 391
DpnI GATC 3 cut(s) 323, 428, 432
DpnII GATC 3 cut(s) 321, 426, 430
DrdI GACNNNNNNGTC 1 cut(s) 416
DseDI GACNNNNNNGTC 1 cut(s) 416
EciI GGCGGA 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 123, 343
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 111
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FauI CCCGC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 103, 457
Fsp4HI GCNGC 2 cut(s) 103, 457
GlaI GCGC 3 cut(s) 106, 185, 316
GluI GCNGC 2 cut(s) 103, 457
HapII CCGG 1 cut(s) 276
HgaI GACGC 2 cut(s) 275, 288
HhaI GCGC 3 cut(s) 107, 186, 317
Hin1I GRCGYC 2 cut(s) 267, 417
Hin6I GCGC 3 cut(s) 105, 184, 315
HinP1I GCGC 3 cut(s) 105, 184, 315
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 2 cut(s) 74, 442
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 205, 379
Hpy166II GTNNAC 2 cut(s) 36, 346
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 3 cut(s) 276, 325, 407
Hpy8I GTNNAC 2 cut(s) 36, 346
Hpy99I CGWCG 7 cut(s) 89, 269, 413, 416, 419, 422, 442
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 438
HpyCH4IV ACGT 3 cut(s) 207, 353, 417
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 108, 266, 376, 453
HpyF3I CTNAG 2 cut(s) 132, 391
HpySE526I ACGT 3 cut(s) 207, 353, 417
Hsp92I GRCGYC 2 cut(s) 267, 417
HspAI GCGC 3 cut(s) 105, 184, 315
Kpn2I TCCGGA 1 cut(s) 275
Kzo9I GATC 3 cut(s) 321, 426, 430
LmnI GCTCC 2 cut(s) 367, 453
LpnPI CCDG 8 cut(s) 30, 98, 107, 125, 289, 332, 338, 433
Lsp1109I GCAGC 1 cut(s) 443
LweI GCATC 1 cut(s) 366
MaeII ACGT 3 cut(s) 207, 353, 417
MaeIII GTNAC 1 cut(s) 385
MalI GATC 3 cut(s) 323, 428, 432
MbiI CCGCTC 1 cut(s) 131
MboI GATC 3 cut(s) 321, 426, 430
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 258
MroI TCCGGA 1 cut(s) 275
MseI TTAA 3 cut(s) 80, 198, 463
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 2 cut(s) 186, 315
MwoI GCNNNNNNNGC 5 cut(s) 49, 108, 266, 376, 453
NdeII GATC 3 cut(s) 321, 426, 430
NlaIV GGNNCC 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 385
PaeR7I CTCGAG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 4 cut(s) 183, 414, 417, 426
PfeI GAWTC 1 cut(s) 442
PflFI GACNNNGTC 1 cut(s) 416
PkrI GCNGC 2 cut(s) 104, 458
Ple19I CGATCG 1 cut(s) 429
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 2 cut(s) 123, 343
PspXI VCTCGAGB 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 416
PvuI CGATCG 1 cut(s) 429
SaqAI TTAA 3 cut(s) 80, 198, 463
SatI GCNGC 2 cut(s) 103, 457
Sau3AI GATC 3 cut(s) 321, 426, 430
Sau96I GGNCC 2 cut(s) 123, 343
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 113
SetI ASST 7 cut(s) 128, 210, 218, 356, 392, 420, 458
SfaNI GCATC 1 cut(s) 366
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 2 cut(s) 123, 343
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 221, 362
SmoI CTYRAG 2 cut(s) 221, 362
SsiI CCGC 6 cut(s) 41, 102, 129, 239, 295, 332
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 438
TaiI ACGT 3 cut(s) 210, 356, 420
TaqI TCGA 8 cut(s) 84, 156, 222, 303, 408, 425, 429, 440
TaqII GACCGA 1 cut(s) 20
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 442
Tru1I TTAA 3 cut(s) 80, 198, 463
Tru9I TTAA 3 cut(s) 80, 198, 463
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 1 cut(s) 456
Tsp45I GTSAC 1 cut(s) 385
TspGWI ACGGA 2 cut(s) 21, 373
TspRI CASTG 1 cut(s) 256
Tth111I GACNNNGTC 1 cut(s) 416
VpaK11BI GGWCC 2 cut(s) 123, 343
XhoI CTCGAG 1 cut(s) 221
ZraI GACGTC 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.