Rh7CG217100

Adaptor-related protein complex 5, beta 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011344
Physical Location & Seq
Forward (+)
19782927 .. 19791787
8861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG217100.1

Sequence Viewer

Length: 1134 bp
ATGAGAGGCCTGCAAATCTCCTCGACGTCACACAACCAAACCCCACCACCACCGCCACCTCCCCCACCACCCCTGCGCGGGGACCCCTCCACTCCAACCACTAGACTACCTCAAGATGATGATCCTTACACGGTGTTTCAAGACACTGTCGACCTCCTCCAATCACAGCAAGAGAATATCCACACCTCCATTGAGGCATTATCTCGGAGCCAGACCACCATGGCACAGCAATTTTCTGCTTTCCAGCAGCTACTCATGAACTGTCTCCAACCTCCACAACCACCTGCCTCTACGACTACAGCACCATATGATTTTTCATGGCAATTGGGTTCCTCCGCAGCCCAATCCATCGCCCAAATTCAACCATCAACACCAGCTACACACCCACAAATCTCCTTTGGATCCATTCCACCACCACCCAATTCCTGGCCGGCTCTGACCATCGCCCAAACACCGCCACCACTCTCTGGTCCCGGTCCCAGCAACTCCCAGCCTTCACCTGCAACTCCCAGACCTCCTCCATACTCCAACCACCTCTCCACCCCACCCCAATACTCCACCTCTTTCTCAGCCCCGCCCTACTACGTCACTGCCCCTGCCCTAGCCCAACAACTTCCACCCCCACTGAGCTTTGCCACATCATTCCCTGTATACACCCCAACCTCTAGACCCCCCCAGCAATACAACACCTACACCCCACCCGACCCACATTTTTTCCGGCCACCCAAGGTGGACCTTCCGCGCTTCACGGCATGCCGGTGGCCCTCTGCGCGCACAATCCTCATCGACCAAGCCCTCTCTTGTCTCAACAAGCGCGAATTCCCTCTGAAGCTCCAGCTCATCGTCTTCCTCGAAGAGTTCTCAGACCCGCTCTTCACATCCGACCCGGATTCCCTCCCCAAAACCCTCCACCGCCTCATCGAAACCCTCCGCGCCCTGATCCAGACCCCCGCCGATGGCGTCCACGTCACCCTCGCCCTCAAGGAGCAGACCATGCTCTCCGTCACCGCGATCTTCATCGCCGCCGACTACATGCTCGACGACTTAGTCGAGTTGCTCCTCACACTCTTTTTATATCCACCTCTTATCCCATCTATTGAACAGGATTATATATCTTACTCTGATAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

377

Amino Acids

41.56

Weight (kDa)

5.15

Isoelectric Point (pI)

67.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19870 AT3G19870
fragaria_vesca FvH4_7g19060
malus_domestica MD01G1105900.v1.1 MD07G1172300.v1.1
prunus_persica Prupe.2G211300_v2.0.a1
pyrus_communis pycom01g13270 pycom07g16670 pycom07g16680
rosa_chinensis RchiOBHm_Chr1g0362961
rosa_laevigata RLG00000027607
rosa_multiflora Rmu_sc0000174.1_g000010
rosa_roxburghii Rroxscaffold_4G00293600
rosa_rugosa Rorug01G0302400
rosa_samantha Rh1AG311900 Rh1BG275100 Rh1CG292200 Rh1DG305800 Rh7CG217100
rosa_wichuraiana Rw1G027650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 292, 508
AasI GACNNNNNNGTC 1 cut(s) 1046
AatII GACGTC 1 cut(s) 29
Acc36I ACCTGC 2 cut(s) 292, 508
AccB7I CCANNNNNTGG 2 cut(s) 426, 467
AccBSI CCGCTC 1 cut(s) 871
AccI GTMKAC 2 cut(s) 150, 651
AccII CGCG 6 cut(s) 78, 742, 772, 816, 933, 1010
AclWI GGATC 4 cut(s) 116, 396, 409, 934
AcoI YGGCCR 2 cut(s) 428, 719
AcsI RAATTY 2 cut(s) 357, 818
AcuI CTGAAG 1 cut(s) 848
AcyI GRCGYC 2 cut(s) 26, 960
AfiI CCNNNNNNNGG 6 cut(s) 77, 78, 79, 426, 467, 956
AgsI TTSAA 3 cut(s) 140, 362, 1100
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 5 cut(s) 250, 377, 630, 832, 838
AluI AGCT 5 cut(s) 250, 377, 630, 832, 838
Alw26I GTCTC 2 cut(s) 269, 809
AlwI GGATC 4 cut(s) 116, 396, 409, 934
AoxI GGCC 4 cut(s) 7, 428, 719, 761
ApeKI GCWGC 2 cut(s) 247, 338
ApoI RAATTY 2 cut(s) 357, 818
AspLEI GCGC 6 cut(s) 78, 744, 772, 774, 816, 935
AspS9I GGNCC 5 cut(s) 82, 470, 476, 733, 762
AsuC2I CCSGG 2 cut(s) 474, 887
AsuHPI GGTGA 3 cut(s) 489, 961, 997
AvaII GGWCC 4 cut(s) 82, 470, 476, 733
BamHI GGATCC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 838
BbvI GCAGC 2 cut(s) 259, 350
BccI CCATC 5 cut(s) 356, 373, 449, 950, 1099
BceAI ACGGC 1 cut(s) 765
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 2 cut(s) 474, 887
BcoDI GTCTC 2 cut(s) 269, 809
BfaI CTAG 3 cut(s) 102, 602, 666
BfmI CTRYAG 1 cut(s) 297
BfuAI ACCTGC 2 cut(s) 292, 508
BisI GCNGC 3 cut(s) 248, 339, 1023
BlsI GCNGC 3 cut(s) 249, 340, 1024
Bme1390I CCNGG 3 cut(s) 427, 474, 887
Bme18I GGWCC 4 cut(s) 82, 470, 476, 733
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 5 cut(s) 82, 470, 476, 733, 762
BmiI GGNNCC 7 cut(s) 83, 84, 209, 331, 403, 472, 478
BmrFI CCNGG 3 cut(s) 427, 474, 887
BpiI GAAGAC 1 cut(s) 838
BpmI CTGGAG 1 cut(s) 818
BpuEI CTTGAG 2 cut(s) 96, 965
BpuMI CCSGG 2 cut(s) 474, 887
BsaBI GATNNNNATC 2 cut(s) 120, 1016
BsaHI GRCGYC 2 cut(s) 26, 960
BsaJI CCNNGG 2 cut(s) 219, 726
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 6 cut(s) 77, 78, 79, 426, 467, 956
Bse118I RCCGGY 2 cut(s) 430, 756
Bse8I GATNNNNATC 2 cut(s) 120, 1016
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 219, 726
BseGI GGATG 1 cut(s) 878
BseJI GATNNNNATC 2 cut(s) 120, 1016
BseLI CCNNNNNNNGG 6 cut(s) 77, 78, 79, 426, 467, 956
BseMII CTCAG 3 cut(s) 582, 617, 876
BsePI GCGCGC 1 cut(s) 770
BseRI GAGGAG 4 cut(s) 10, 146, 507, 1049
BseXI GCAGC 2 cut(s) 259, 350
BseYI CCCAGC 3 cut(s) 479, 489, 675
Bsh1236I CGCG 6 cut(s) 78, 742, 772, 816, 933, 1010
BshFI GGCC 4 cut(s) 9, 430, 721, 763
BsiSI CCGG 5 cut(s) 431, 474, 718, 757, 887
BslFI GGGAC 3 cut(s) 95, 456, 462
BslI CCNNNNNNNGG 6 cut(s) 77, 78, 79, 426, 467, 956
BsmAI GTCTC 2 cut(s) 269, 809
BsmFI GGGAC 3 cut(s) 95, 456, 462
BsnI GGCC 4 cut(s) 9, 430, 721, 763
Bsp143I GATC 4 cut(s) 121, 401, 939, 1011
Bsp19I CCATGG 1 cut(s) 219
BspANI GGCC 4 cut(s) 9, 430, 721, 763
BspCNI CTCAG 3 cut(s) 581, 618, 875
BspFNI CGCG 6 cut(s) 78, 742, 772, 816, 933, 1010
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 7 cut(s) 83, 84, 209, 331, 403, 472, 478
BspMI ACCTGC 2 cut(s) 292, 508
BspPI GGATC 4 cut(s) 116, 396, 409, 934
BspQI GCTCTTC 1 cut(s) 878
BsrBI CCGCTC 1 cut(s) 871
BsrFI RCCGGY 2 cut(s) 430, 756
BssAI RCCGGY 2 cut(s) 430, 756
BssECI CCNNGG 2 cut(s) 219, 726
BssHII GCGCGC 1 cut(s) 770
BssMI GATC 4 cut(s) 121, 401, 939, 1011
BssNAI GTATAC 1 cut(s) 652
BssNI GRCGYC 2 cut(s) 26, 960
BssT1I CCWWGG 2 cut(s) 219, 726
Bst1107I GTATAC 1 cut(s) 652
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 3 cut(s) 133, 148, 263
Bst6I CTCTTC 2 cut(s) 849, 878
BstACI GRCGYC 2 cut(s) 26, 960
BstAPI GCANNNNNTGC 1 cut(s) 994
BstC8I GCNNGC 4 cut(s) 11, 432, 754, 772
BstDEI CTNAG 4 cut(s) 568, 626, 862, 1045
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 878
BstFNI CGCG 6 cut(s) 78, 742, 772, 816, 933, 1010
BstHHI GCGC 6 cut(s) 78, 744, 772, 774, 816, 935
BstKTI GATC 4 cut(s) 124, 404, 942, 1014
BstMAI GTCTC 2 cut(s) 269, 809
BstMBI GATC 4 cut(s) 121, 401, 939, 1011
BstMWI GCNNNNNNNGC 2 cut(s) 769, 994
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 2 cut(s) 756, 1036
BstSCI CCNGG 3 cut(s) 425, 472, 885
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 6 cut(s) 78, 742, 772, 816, 933, 1010
BstV1I GCAGC 2 cut(s) 259, 350
BstV2I GAAGAC 1 cut(s) 838
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BstZ17I GTATAC 1 cut(s) 652
BsuRI GGCC 4 cut(s) 9, 430, 721, 763
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 3 cut(s) 334, 427, 1003
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 1 cut(s) 878
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 144, 588, 623
BveI ACCTGC 2 cut(s) 292, 508
Cac8I GCNNGC 4 cut(s) 11, 432, 754, 772
CciI TCATGA 1 cut(s) 255
CfoI GCGC 6 cut(s) 78, 744, 772, 774, 816, 935
Cfr10I RCCGGY 2 cut(s) 430, 756
Cfr13I GGNCC 5 cut(s) 82, 470, 476, 733, 762
CseI GACGC 1 cut(s) 949
CviAII CATG 6 cut(s) 220, 256, 318, 753, 994, 1033
DdeI CTNAG 4 cut(s) 568, 626, 862, 1045
DpnI GATC 4 cut(s) 123, 403, 941, 1013
DpnII GATC 4 cut(s) 121, 401, 939, 1011
DrdI GACNNNNNNGTC 1 cut(s) 1046
DseDI GACNNNNNNGTC 1 cut(s) 1046
EaeI YGGCCR 2 cut(s) 428, 719
Eam1104I CTCTTC 2 cut(s) 849, 878
EarI CTCTTC 2 cut(s) 849, 878
Eco130I CCWWGG 2 cut(s) 219, 726
Eco147I AGGCCT 1 cut(s) 9
Eco47I GGWCC 4 cut(s) 82, 470, 476, 733
Eco57I CTGAAG 1 cut(s) 848
EcoO109I RGGNCCY 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 818
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 219, 726
ErhI CCWWGG 2 cut(s) 219, 726
FaeI CATG 6 cut(s) 223, 259, 321, 756, 997, 1036
FaqI GGGAC 3 cut(s) 95, 456, 462
FatI CATG 6 cut(s) 219, 255, 317, 752, 993, 1032
FauI CCCGC 4 cut(s) 71, 582, 876, 958
FauNDI CATATG 1 cut(s) 307
FblI GTMKAC 2 cut(s) 150, 651
Fnu4HI GCNGC 3 cut(s) 248, 339, 1023
FokI GGATG 1 cut(s) 865
Fsp4HI GCNGC 3 cut(s) 248, 339, 1023
FspBI CTAG 3 cut(s) 102, 602, 666
GlaI GCGC 6 cut(s) 77, 743, 771, 773, 815, 934
GluI GCNGC 3 cut(s) 248, 339, 1023
GsaI CCCAGC 3 cut(s) 483, 493, 679
GsuI CTGGAG 1 cut(s) 818
HaeIII GGCC 4 cut(s) 9, 430, 721, 763
HapII CCGG 5 cut(s) 431, 474, 718, 757, 887
HgaI GACGC 1 cut(s) 949
HhaI GCGC 6 cut(s) 78, 744, 772, 774, 816, 935
Hin1I GRCGYC 2 cut(s) 26, 960
Hin1II CATG 6 cut(s) 223, 259, 321, 756, 997, 1036
Hin6I GCGC 6 cut(s) 76, 742, 770, 772, 814, 933
HinP1I GCGC 6 cut(s) 76, 742, 770, 772, 814, 933
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 890
HpaII CCGG 5 cut(s) 431, 474, 718, 757, 887
HphI GGTGA 3 cut(s) 489, 961, 997
Hpy166II GTNNAC 4 cut(s) 151, 652, 733, 964
Hpy188I TCNGA 6 cut(s) 207, 438, 828, 865, 883, 1123
Hpy188III TCNNGA 5 cut(s) 113, 140, 256, 666, 943
Hpy8I GTNNAC 4 cut(s) 151, 652, 733, 964
Hpy99I CGWCG 2 cut(s) 28, 1043
HpyAV CCTTC 2 cut(s) 504, 746
HpyCH4III ACNGT 3 cut(s) 133, 148, 263
HpyCH4IV ACGT 3 cut(s) 26, 585, 966
HpyCH4V TGCA 2 cut(s) 13, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 769, 994
HpyF3I CTNAG 4 cut(s) 568, 626, 862, 1045
HpySE526I ACGT 3 cut(s) 26, 585, 966
Hsp92I GRCGYC 2 cut(s) 26, 960
Hsp92II CATG 6 cut(s) 223, 259, 321, 756, 997, 1036
HspAI GCGC 6 cut(s) 76, 742, 770, 772, 814, 933
KflI GGGWCCC 1 cut(s) 82
KroI GCCGGC 1 cut(s) 430
KroNI GCCGGC 1 cut(s) 432
Kzo9I GATC 4 cut(s) 121, 401, 939, 1011
LguI GCTCTTC 1 cut(s) 878
LmnI GCTCC 4 cut(s) 207, 837, 985, 1062
Lsp1109I GCAGC 2 cut(s) 259, 350
MaeI CTAG 3 cut(s) 102, 602, 666
MaeII ACGT 3 cut(s) 26, 585, 966
MaeIII GTNAC 4 cut(s) 27, 586, 967, 1003
MalI GATC 4 cut(s) 123, 403, 941, 1013
MbiI CCGCTC 1 cut(s) 871
MboI GATC 4 cut(s) 121, 401, 939, 1011
MboII GAAGA 4 cut(s) 838, 865, 866, 1006
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 1 cut(s) 401
MluCI AATT 6 cut(s) 230, 323, 357, 421, 818, 1129
MmeI TCCRAC 4 cut(s) 119, 292, 552, 906
MroNI GCCGGC 1 cut(s) 430
MslI CAYNNNNRTG 1 cut(s) 757
MspI CCGG 5 cut(s) 431, 474, 718, 757, 887
MspR9I CCNGG 3 cut(s) 427, 474, 887
MunI CAATTG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 427
MvnI CGCG 6 cut(s) 78, 742, 772, 816, 933, 1010
MwoI GCNNNNNNNGC 2 cut(s) 769, 994
NaeI GCCGGC 1 cut(s) 432
NciI CCSGG 2 cut(s) 474, 887
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 307
NdeII GATC 4 cut(s) 121, 401, 939, 1011
NgoMIV GCCGGC 1 cut(s) 430
NlaIII CATG 6 cut(s) 223, 259, 321, 756, 997, 1036
NlaIV GGNNCC 7 cut(s) 83, 84, 209, 331, 403, 472, 478
NmuCI GTSAC 4 cut(s) 27, 586, 967, 1003
NspI RCATGY 2 cut(s) 756, 1036
PaeI GCATGC 1 cut(s) 756
PagI TCATGA 1 cut(s) 255
PaqCI CACCTGC 2 cut(s) 292, 508
PauI GCGCGC 1 cut(s) 770
PceI AGGCCT 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 878
PcsI WCGNNNNNNNCGW 2 cut(s) 849, 1047
PdiI GCCGGC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 890
PflFI GACNNNGTC 2 cut(s) 146, 1046
PflMI CCANNNNNTGG 2 cut(s) 426, 467
PkrI GCNGC 3 cut(s) 249, 340, 1024
PpuMI RGGWCCY 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 425
PspFI CCCAGC 3 cut(s) 479, 489, 675
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 7 cut(s) 83, 84, 209, 331, 403, 472, 478
PspPI GGNCC 5 cut(s) 82, 470, 476, 733, 762
PspPPI RGGWCCY 1 cut(s) 82
PsuI RGATCY 1 cut(s) 401
PsyI GACNNNGTC 2 cut(s) 146, 1046
PteI GCGCGC 1 cut(s) 770
RseI CAYNNNNRTG 1 cut(s) 757
SalI GTCGAC 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 878
SatI GCNGC 3 cut(s) 248, 339, 1023
Sau3AI GATC 4 cut(s) 121, 401, 939, 1011
Sau96I GGNCC 5 cut(s) 82, 470, 476, 733, 762
ScrFI CCNGG 3 cut(s) 427, 474, 887
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 4 cut(s) 82, 470, 476, 733
SmiMI CAYNNNNRTG 1 cut(s) 757
SmlI CTYRAG 2 cut(s) 111, 980
SmoI CTYRAG 2 cut(s) 111, 980
SphI GCATGC 1 cut(s) 756
Sse9I AATT 6 cut(s) 230, 323, 357, 421, 818, 1129
SseBI AGGCCT 1 cut(s) 9
SspMI CTAG 3 cut(s) 102, 602, 666
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 3 cut(s) 425, 472, 885
StyI CCWWGG 2 cut(s) 219, 726
TaaI ACNGT 3 cut(s) 133, 148, 263
TaiI ACGT 3 cut(s) 29, 588, 969
TaqI TCGA 7 cut(s) 23, 150, 786, 852, 921, 1038, 1050
TasI AATT 6 cut(s) 230, 323, 357, 421, 818, 1129
TauI GCSGC 1 cut(s) 1025
TfiI GAWTC 1 cut(s) 890
TscAI CASTG 3 cut(s) 151, 595, 630
TseFI GTSAC 4 cut(s) 27, 586, 967, 1003
TseI GCWGC 2 cut(s) 247, 338
Tsp45I GTSAC 4 cut(s) 27, 586, 967, 1003
TspDTI ATGAA 3 cut(s) 272, 306, 1006
TspGWI ACGGA 1 cut(s) 991
TspRI CASTG 3 cut(s) 151, 595, 630
Tth111I GACNNNGTC 2 cut(s) 146, 1046
Van91I CCANNNNNTGG 2 cut(s) 426, 467
VpaK11BI GGWCC 4 cut(s) 82, 470, 476, 733
XapI RAATTY 2 cut(s) 357, 818
XbaI TCTAGA 1 cut(s) 665
XceI RCATGY 2 cut(s) 756, 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 423
XmiI GTMKAC 2 cut(s) 150, 651
XspI CTAG 3 cut(s) 102, 602, 666
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.