Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008230

Physical Location & Seq

Genomic Coordinates Forward (+)

23983829 .. 23985981

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGGCCCTGTCTGTGTTCTCTCTGTTCGCTCTGTTTTCACTGAGCCACATTGCTCTTCTCTCGACTCTCTGTTTCGCCGCAGACCCCTTCGTCTTCTACGACTTCCGCGTCTCTTACATCACCGCCTCTCCGCTCGGCGTTCCTCAACGGGTTATAGCAGTTAATGGGCAGTTTCCAGGTCCTGCTATCAATGCTACTACAAACAACAATGTTGTTGTTAATGTGCATAATGAATTGGACGAGAATCTCCTAATTACTTGGTCTGGGATTCAAATGCGGCGGAATTCATGGCAGGATGGTGTTCTTGGCACAAATTGTCCAATCCCTCCCTCGTGGAATTGGACTTTTCAGTTTCAAGTTAAGGACCAGATCGGGAGCTTCTTCTACTTTCCATCTCTTAATTTGCAGAGAGCATCTGGAGGTTTTGGCTCCTTTCATATTAATAATAGGCAGACAATTGAAATTCCTTTTAATCAGCCTGCTGGTGATATCTTCATTACTATCGGTGACTGGTATACACAAAACCATACGGCACTGAGAACTGCTCTTGATGCTGGAAAAGATCTCGGGATGCCGGATGGAGTTCTTATCAATGGGAAGGGGCCTTATCAATACAACAATACCCTAGTACCTGATGGAATTCAGTATGAAACCATTAATGTTGATCCAGGAAAGACATATAGAATACGTGTGCACAACGTTGGTATTTCAACAAGTTTGAACTTTAGAATTCAGAATCACAATCTGCTTTTAGCTGAAACAGAGGGATGTTATACAATGCAACAAAACTATACGCAGATTGATATTCATGTCGGACAGTCATATTCATTTCTTGTTACCATGGATCGATCAAGAATGCCAGTAGTGCTTACTACATCGTTGCAAGTGCGAGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016020 GO:0016491 GO:0016722 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

301

Amino Acids

33.51

Weight (kDa)

6.13

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25240 AT4G25240 AT5G51480
fragaria_vesca	FvH4_7g27730 FvH4_7g27730 FvH4_7g27730
malus_domestica	MD07G1254600.v1.1 MD11G1195700.v1.1
prunus_persica	Prupe.2G278000_v2.0.a1 Prupe.2G278000_v2.0.a1
pyrus_communis	pycom01g19420 pycom07g22780
rosa_chinensis	RchiOBHm_Chr1g0374521
rosa_laevigata	RLG00000026731
rosa_multiflora	Rmu_ssc0000007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283430
rosa_rugosa	Rorug01G0383900
rosa_samantha	Rh1AG394600 Rh1BG359200 Rh1CG372300 Rh1DG389900
rosa_wichuraiana	Rw1G034160 Rw1G034980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	92, 110
AccBSI	CCGCTC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	1 cut(s)	111
AciI	CCGC	7 cut(s)	5, 81, 109, 126, 134, 280, 283
AclI	AACGTT	1 cut(s)	702
AclWI	GGATC	2 cut(s)	662, 855
AcsI	RAATTY	4 cut(s)	286, 465, 642, 732
AfaI	GTAC	1 cut(s)	633
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	5 cut(s)	275, 359, 464, 714, 724
AjnI	CCWGG	2 cut(s)	178, 670
AluBI	AGCT	2 cut(s)	381, 758
AluI	AGCT	2 cut(s)	381, 758
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	695
AlwI	GGATC	2 cut(s)	662, 855
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	6, 605
ApaLI	GTGCAC	1 cut(s)	695
ApoI	RAATTY	4 cut(s)	286, 465, 642, 732
AseI	ATTAAT	2 cut(s)	444, 660
AspS9I	GGNCC	4 cut(s)	7, 182, 367, 605
AsuHPI	GGTGA	3 cut(s)	115, 500, 521
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	182, 367
BaeGI	GKGCMC	1 cut(s)	699
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BauI	CACGAG	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	699
BccI	CCATC	4 cut(s)	293, 403, 575, 632
BceAI	ACGGC	1 cut(s)	549
BciT130I	CCWGG	2 cut(s)	180, 672
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	629
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	3 cut(s)	6, 81, 281
BlsI	GCNGC	3 cut(s)	7, 82, 282
Bme1390I	CCNGG	2 cut(s)	180, 672
Bme18I	GGWCC	2 cut(s)	182, 367
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	4 cut(s)	7, 182, 367, 605
BmiI	GGNNCC	2 cut(s)	433, 606
BmrFI	CCNGG	2 cut(s)	180, 672
BmsI	GCATC	3 cut(s)	425, 544, 564
BpiI	GAAGAC	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
BpmI	CTGGAG	1 cut(s)	441
Bsa29I	ATCGAT	1 cut(s)	850
BsaAI	YACGTR	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	843
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bse1I	ACTGG	2 cut(s)	518, 863
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	180, 672
BseCI	ATCGAT	1 cut(s)	850
BseDI	CCNNGG	1 cut(s)	843
BseGI	GGATG	4 cut(s)	304, 579, 586, 776
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	35, 530
BseNI	ACTGG	2 cut(s)	518, 863
BseSI	GKGCMC	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	8, 607
BshVI	ATCGAT	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	118
BsmBI	CGTCTC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	864
BsnI	GGCC	2 cut(s)	8, 607
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	5 cut(s)	372, 565, 667, 847, 851
Bsp19I	CCATGG	1 cut(s)	843
BspACI	CCGC	7 cut(s)	5, 81, 109, 126, 134, 280, 283
BspANI	GGCC	2 cut(s)	8, 607
BspCNI	CTCAG	2 cut(s)	36, 531
BspDI	ATCGAT	1 cut(s)	850
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	433, 606
BspPI	GGATC	2 cut(s)	662, 855
BspQI	GCTCTTC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	518, 863
BssECI	CCNNGG	1 cut(s)	843
BssMI	GATC	5 cut(s)	372, 565, 667, 847, 851
BssNAI	GTATAC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	843
Bst1107I	GTATAC	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	180, 672
Bst4CI	ACNGT	1 cut(s)	822
Bst6I	CTCTTC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	2 cut(s)	44, 539
BstDSI	CCRYGG	1 cut(s)	843
BstF5I	GGATG	4 cut(s)	304, 579, 586, 776
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	5 cut(s)	375, 568, 670, 850, 854
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	5 cut(s)	372, 565, 667, 847, 851
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 554, 868
BstNI	CCWGG	2 cut(s)	180, 672
BstSCI	CCNGG	2 cut(s)	178, 670
BstSLI	GKGCMC	1 cut(s)	699
BstUI	CGCG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BstZ17I	GTATAC	1 cut(s)	519
Bsu15I	ATCGAT	1 cut(s)	850
BsuRI	GGCC	2 cut(s)	8, 607
BsuTUI	ATCGAT	1 cut(s)	850
BtgI	CCRYGG	1 cut(s)	843
BtsCI	GGATG	4 cut(s)	304, 579, 586, 776
BtsIMutI	CAGTG	2 cut(s)	41, 536
Cac8I	GCNNGC	1 cut(s)	483
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr13I	GGNCC	4 cut(s)	7, 182, 367, 605
ClaI	ATCGAT	1 cut(s)	850
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	3 cut(s)	291, 812, 844
CviJI	RGCY	7 cut(s)	8, 48, 381, 432, 481, 607, 758
CviKI_1	RGCY	7 cut(s)	8, 48, 381, 432, 481, 607, 758
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	2 cut(s)	44, 539
DpnI	GATC	5 cut(s)	374, 567, 669, 849, 853
DpnII	GATC	5 cut(s)	372, 565, 667, 847, 851
DrdI	GACNNNNNNGTC	2 cut(s)	92, 110
DseDI	GACNNNNNNGTC	2 cut(s)	92, 110
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	843
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	182, 367
Eco88I	CYCGRG	1 cut(s)	569
EcoO109I	RGGNCCY	2 cut(s)	182, 605
EcoRI	GAATTC	3 cut(s)	286, 642, 732
EcoRII	CCWGG	2 cut(s)	178, 670
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	843
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	3 cut(s)	294, 815, 847
FatI	CATG	3 cut(s)	290, 811, 843
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	3 cut(s)	6, 81, 281
FokI	GGATG	4 cut(s)	311, 586, 593, 783
Fsp4HI	GCNGC	3 cut(s)	6, 81, 281
FspBI	CTAG	1 cut(s)	629
GluI	GCNGC	3 cut(s)	6, 81, 281
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	8, 607
HapII	CCGG	1 cut(s)	578
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	294, 815, 847
HinfI	GANTC	4 cut(s)	67, 247, 271, 739
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	3 cut(s)	115, 500, 521
Hpy166II	GTNNAC	2 cut(s)	519, 697
Hpy188I	TCNGA	2 cut(s)	738, 818
Hpy188III	TCNNGA	6 cut(s)	64, 376, 420, 551, 571, 855
Hpy8I	GTNNAC	2 cut(s)	519, 697
HpyAV	CCTTC	2 cut(s)	100, 595
HpyCH4III	ACNGT	1 cut(s)	822
HpyCH4IV	ACGT	2 cut(s)	691, 702
HpyCH4V	TGCA	5 cut(s)	229, 409, 697, 784, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 554, 868
HpyF3I	CTNAG	2 cut(s)	44, 539
HpySE526I	ACGT	2 cut(s)	691, 702
Hsp92II	CATG	3 cut(s)	294, 815, 847
Kzo9I	GATC	5 cut(s)	372, 565, 667, 847, 851
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	378, 437
LweI	GCATC	3 cut(s)	425, 544, 564
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	2 cut(s)	691, 702
MaeIII	GTNAC	2 cut(s)	509, 838
MalI	GATC	5 cut(s)	374, 567, 669, 849, 853
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	5 cut(s)	372, 565, 667, 847, 851
MboII	GAAGA	4 cut(s)	50, 88, 376, 487
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	1 cut(s)	699
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	796
MnlI	CCTC	7 cut(s)	139, 156, 339, 343, 416, 760, 887
MseI	TTAA	7 cut(s)	165, 222, 363, 402, 444, 474, 660
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	2 cut(s)	180, 672
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	864
MvaI	CCWGG	2 cut(s)	180, 672
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	194, 554, 868
NcoI	CCATGG	1 cut(s)	843
NdeII	GATC	5 cut(s)	372, 565, 667, 847, 851
NlaIII	CATG	3 cut(s)	294, 815, 847
NlaIV	GGNNCC	2 cut(s)	433, 606
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 108
PctI	GAATGC	1 cut(s)	864
PfeI	GAWTC	3 cut(s)	247, 271, 739
PfoI	TCCNGGA	1 cut(s)	670
PkrI	GCNGC	3 cut(s)	7, 82, 282
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Ppu21I	YACGTR	1 cut(s)	692
PpuMI	RGGWCCY	1 cut(s)	182
PshBI	ATTAAT	2 cut(s)	444, 660
Psp1406I	AACGTT	1 cut(s)	702
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	178, 670
PspGI	CCWGG	2 cut(s)	178, 670
PspN4I	GGNNCC	2 cut(s)	433, 606
PspPI	GGNCC	4 cut(s)	7, 182, 367, 605
PspPPI	RGGWCCY	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	7 cut(s)	165, 222, 363, 402, 444, 474, 660
SatI	GCNGC	3 cut(s)	6, 81, 281
Sau3AI	GATC	5 cut(s)	372, 565, 667, 847, 851
Sau96I	GGNCC	4 cut(s)	7, 182, 367, 605
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	180, 672
SduI	GDGCHC	1 cut(s)	699
SetI	ASST	8 cut(s)	184, 383, 427, 637, 694, 705, 760, 898
SfaNI	GCATC	3 cut(s)	425, 544, 564
SinI	GGWCC	2 cut(s)	182, 367
SsiI	CCGC	7 cut(s)	5, 81, 109, 126, 134, 280, 283
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	2 cut(s)	178, 670
StyI	CCWWGG	1 cut(s)	843
TaaI	ACNGT	1 cut(s)	822
TaiI	ACGT	2 cut(s)	694, 705
TaqI	TCGA	2 cut(s)	65, 850
TauI	GCSGC	3 cut(s)	8, 83, 283
TfiI	GAWTC	3 cut(s)	247, 271, 739
Tru1I	TTAA	7 cut(s)	165, 222, 363, 402, 444, 474, 660
Tru9I	TTAA	7 cut(s)	165, 222, 363, 402, 444, 474, 660
TscAI	CASTG	2 cut(s)	48, 543
TseFI	GTSAC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	7 cut(s)	249, 279, 428, 487, 666, 800, 819
TspRI	CASTG	2 cut(s)	48, 543
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	2 cut(s)	182, 367
VspI	ATTAAT	2 cut(s)	444, 660
XapI	RAATTY	4 cut(s)	286, 465, 642, 732
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.