Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008230

Physical Location & Seq

Genomic Coordinates Forward (+)

48980387 .. 48984428

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGACTTGGTCTGGAATCCAGATGCGGCGGAATTCATGGCAGGATGGTGTGCTTGGTACGAATTGCCCAATCCCGAAAACATGGAACTGGACTTATAACTTCCAAGTCAAGGATCAGATTGGGAGCTTCTTCTACTTCCCATCGCTGAATTTTCAGAGGGCTGCTGGTGGCTTTGGCTCTTTTCATCTCAATAATAGGGAGATAATTGAAATTCCATTTGCTAAGCCTGATGGGGATATTGCTATTATGATTGGTGACTGGTATACTCGGAACCATACGGCATTGAAGACTGCTCTTGATGCTGGAAAAGACCTTGGGATGCCGGATGGAGTTCTCATCAATGGAAAGGGGCCTTATCAATACAACAAGACACTAGTACCTGATGGGATTCAGTATGAAACCATCAATGTTGAACCAGGGAAAACTTATCGACTGCGTGTGCACAATGTTGGTGTTTCAACTAGTTTGAACTTCAGAATTCAGAGTCACAATCTGCTTCTAGCTGAAACAGAGGGATATTATACAATCCAGCAGAACTATACAAACTTTGATATTCATGTTGGACAATCGTATTCTTTTCTTGTTACCATGGATCAAAATGCCAGTAGTGATTACTACATTGTGGCAAGTGCAAGGTTTGTGAATGAATCACTTTGGCAGAGGGTTACAGGTGTTGCTGTCTTACACTATTCAAACTCTAAAGGACCAGTAAGCGGTCCTCTTCCTGATGCTCCCCAGGATGCTTTTGACCCACAATGGTCGATGAACCAGGCATTGACTGTCAGGCAAAACGGATCTGCAAGTGGAGCTCGCCCTAATCCTCAGGGATCATTTCACTATGGTTCAATTAACATCACTGATACTTACGTGTTAAAAATTGTGCCACCACTCACAATTGATGGGAAACTCCGAGCTACAATAAATGGCATCTCTTTTGTCAATCCTCAGACACCAATCAGGCTTGCTGATCAGCATAAAGTTAAAGGAGAGTATAAGCTTGATTTTCCCAACATGTCACTTAATAGACTTCCCAGAAGAGACATGTCCGTTATTAATGCTACATATAAGGGTTTTATTGAAATTGTATTCCAGAACAATGACACCACTGTGCAGACTTTTCATTTAGATGGATATTCCTTTTTCGTGGTTGGGATGGGTTATGGTAATTGGACAGTAGACAATCAAGGAAATTATAACAAGTGGGATGCAATCTCTCGCTGCACTACACAGGTCTGTTTTCTTATTGGAGCAACTCTTTTATTACTTGCAATGTTTAATTTGGAATGCTTGTTGCTTGTTGTTTGTCTTGCATTGAGTTCTGTTTTGTTACTGTGTGTAGGTCTACCCTGGGGCATGGACTGCAGTGCTTATCTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016020 GO:0016491 GO:0016722 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

459

Amino Acids

51.37

Weight (kDa)

6.75

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	1 - 66	6.7e-21	Multicopper oxidase
Cu-oxidase	PF00394	80 - 233	7.3e-45	Multicopper oxidase
Cu-oxidase_2	PF07731	317 - 411	2.9e-18	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25240 AT4G25240 AT5G51480
fragaria_vesca	FvH4_7g27730 FvH4_7g27730 FvH4_7g27730
malus_domestica	MD07G1254600.v1.1 MD11G1195700.v1.1
prunus_persica	Prupe.2G278000_v2.0.a1 Prupe.2G278000_v2.0.a1
pyrus_communis	pycom01g19420 pycom07g22780
rosa_chinensis	RchiOBHm_Chr1g0374521
rosa_laevigata	RLG00000026731
rosa_multiflora	Rmu_ssc0000007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283430
rosa_rugosa	Rorug01G0383900
rosa_samantha	Rh1AG394600 Rh1BG359200 Rh1CG372300 Rh1DG389900
rosa_wichuraiana	Rw1G034160 Rw1G034980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	96, 1194
AccI	GTMKAC	3 cut(s)	263, 1176, 1342
AciI	CCGC	3 cut(s)	25, 28, 714
AclWI	GGATC	4 cut(s)	120, 600, 802, 835
AcsI	RAATTY	4 cut(s)	31, 148, 210, 477
AcuI	CTGAAG	1 cut(s)	457
AfaI	GTAC	2 cut(s)	58, 378
AfiI	CCNNNNNNNGG	2 cut(s)	109, 713
AflIII	ACRYGT	3 cut(s)	867, 1011, 1041
AgsI	TTSAA	8 cut(s)	209, 286, 413, 459, 469, 693, 846, 1079
AhlI	ACTAGT	2 cut(s)	373, 461
AjnI	CCWGG	4 cut(s)	415, 735, 768, 1346
AleI	CACNNNNGTG	1 cut(s)	1106
AluBI	AGCT	5 cut(s)	126, 503, 809, 914, 997
AluI	AGCT	5 cut(s)	126, 503, 809, 914, 997
Alw21I	GWGCWC	2 cut(s)	444, 811
Alw26I	GTCTC	1 cut(s)	1032
Alw44I	GTGCAC	1 cut(s)	440
AlwI	GGATC	4 cut(s)	120, 600, 802, 835
AoxI	GGCC	1 cut(s)	350
ApaLI	GTGCAC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	161, 1218
ApoI	RAATTY	4 cut(s)	31, 148, 210, 477
AseI	ATTAAT	1 cut(s)	1053
AspS9I	GGNCC	3 cut(s)	350, 704, 716
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	704, 716
AxyI	CCTNAGG	1 cut(s)	822
BaeGI	GKGCMC	1 cut(s)	444
BaeI	ACNNNNGTAYC	4 cut(s)	360, 393, 852, 885
BanII	GRGCYC	1 cut(s)	811
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	2 cut(s)	444, 811
BbvI	GCAGC	2 cut(s)	148, 1205
BccI	CCATC	9 cut(s)	38, 148, 224, 320, 377, 410, 893, 1121, 1147
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	4 cut(s)	417, 737, 770, 1348
BclI	TGATCA	1 cut(s)	967
BcoDI	GTCTC	1 cut(s)	1032
BcuI	ACTAGT	2 cut(s)	373, 461
BfaI	CTAG	3 cut(s)	374, 462, 500
BfmI	CTRYAG	1 cut(s)	1360
BisI	GCNGC	3 cut(s)	26, 162, 1219
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	3 cut(s)	27, 163, 1220
Bme1390I	CCNGG	4 cut(s)	417, 737, 770, 1348
Bme18I	GGWCC	2 cut(s)	704, 716
BmgT120I	GGNCC	3 cut(s)	350, 704, 716
BmiI	GGNNCC	2 cut(s)	272, 351
BmrFI	CCNGG	4 cut(s)	417, 737, 770, 1348
BmsI	GCATC	7 cut(s)	12, 289, 309, 718, 730, 936, 1195
BpiI	GAAGAC	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	868
BsaJI	CCNNGG	6 cut(s)	313, 416, 588, 735, 1346, 1347
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 713
Bse1I	ACTGG	4 cut(s)	92, 263, 603, 707
Bse21I	CCTNAGG	1 cut(s)	822
Bse3DI	GCAATG	1 cut(s)	1275
BseBI	CCWGG	4 cut(s)	417, 737, 770, 1348
BseDI	CCNNGG	6 cut(s)	313, 416, 588, 735, 1346, 1347
BseGI	GGATG	6 cut(s)	49, 324, 331, 745, 1158, 1210
BseLI	CCNNNNNNNGG	2 cut(s)	109, 713
BseMI	GCAATG	1 cut(s)	1275
BseMII	CTCAG	2 cut(s)	836, 959
BseNI	ACTGG	4 cut(s)	92, 263, 603, 707
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	148, 1205
BsgI	GTGCAG	2 cut(s)	1130, 1204
BshFI	GGCC	1 cut(s)	352
BsiHKAI	GWGCWC	2 cut(s)	444, 811
BsiSI	CCGG	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	109, 713
BsmAI	GTCTC	1 cut(s)	1032
BsmI	GAATGC	1 cut(s)	1289
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	444, 811
Bsp143I	GATC	5 cut(s)	112, 592, 794, 827, 967
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	3 cut(s)	25, 28, 714
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	2 cut(s)	835, 958
BspLI	GGNNCC	2 cut(s)	272, 351
BspMAI	CTGCAG	1 cut(s)	1364
BspPI	GGATC	4 cut(s)	120, 600, 802, 835
BsrDI	GCAATG	1 cut(s)	1275
BsrI	ACTGG	4 cut(s)	92, 263, 603, 707
BssECI	CCNNGG	6 cut(s)	313, 416, 588, 735, 1346, 1347
BssMI	GATC	5 cut(s)	112, 592, 794, 827, 967
BssNAI	GTATAC	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	313, 588
Bst1107I	GTATAC	1 cut(s)	264
Bst2UI	CCWGG	4 cut(s)	417, 737, 770, 1348
Bst4CI	ACNGT	4 cut(s)	781, 1108, 1174, 1332
Bst6I	CTCTTC	2 cut(s)	726, 1030
BstAPI	GCANNNNNTGC	1 cut(s)	1359
BstBAI	YACGTR	1 cut(s)	868
BstC8I	GCNNGC	2 cut(s)	811, 963
BstDEI	CTNAG	3 cut(s)	222, 822, 945
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	6 cut(s)	49, 324, 331, 745, 1158, 1210
BstKTI	GATC	5 cut(s)	115, 595, 797, 830, 970
BstMAI	GTCTC	1 cut(s)	1032
BstMBI	GATC	5 cut(s)	112, 592, 794, 827, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 806, 1359
BstNI	CCWGG	4 cut(s)	417, 737, 770, 1348
BstNSI	RCATGY	2 cut(s)	1015, 1045
BstSCI	CCNGG	4 cut(s)	415, 735, 768, 1346
BstSFI	CTRYAG	1 cut(s)	1360
BstSLI	GKGCMC	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	148, 1205
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
BstZ17I	GTATAC	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	822
BsuRI	GGCC	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	588
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	6 cut(s)	49, 324, 331, 745, 1158, 1210
BtsI	GCAGTG	1 cut(s)	1369
BtsIMutI	CAGTG	3 cut(s)	855, 1104, 1369
Cac8I	GCNNGC	2 cut(s)	811, 963
Cfr13I	GGNCC	3 cut(s)	350, 704, 716
Csp6I	GTAC	2 cut(s)	57, 377
CviAII	CATG	7 cut(s)	36, 81, 557, 589, 1012, 1042, 1354
CviQI	GTAC	2 cut(s)	57, 377
DdeI	CTNAG	3 cut(s)	222, 822, 945
DpnI	GATC	5 cut(s)	114, 594, 796, 829, 969
DpnII	GATC	5 cut(s)	112, 592, 794, 827, 967
Eam1104I	CTCTTC	2 cut(s)	726, 1030
EarI	CTCTTC	2 cut(s)	726, 1030
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	809
Eco130I	CCWWGG	2 cut(s)	313, 588
Eco24I	GRGCYC	1 cut(s)	811
Eco47I	GGWCC	2 cut(s)	704, 716
Eco53kI	GAGCTC	1 cut(s)	809
Eco57I	CTGAAG	1 cut(s)	457
Eco81I	CCTNAGG	1 cut(s)	822
EcoICRI	GAGCTC	1 cut(s)	809
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	2 cut(s)	31, 477
EcoRII	CCWGG	4 cut(s)	415, 735, 768, 1346
EcoT14I	CCWWGG	2 cut(s)	313, 588
EcoT38I	GRGCYC	1 cut(s)	811
ErhI	CCWWGG	2 cut(s)	313, 588
FaeI	CATG	7 cut(s)	39, 84, 560, 592, 1015, 1045, 1357
FatI	CATG	7 cut(s)	35, 80, 556, 588, 1011, 1041, 1353
FbaI	TGATCA	1 cut(s)	967
FblI	GTMKAC	3 cut(s)	263, 1176, 1342
Fnu4HI	GCNGC	3 cut(s)	26, 162, 1219
FokI	GGATG	6 cut(s)	56, 331, 338, 752, 1165, 1217
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	3 cut(s)	26, 162, 1219
FspBI	CTAG	3 cut(s)	374, 462, 500
GluI	GCNGC	3 cut(s)	26, 162, 1219
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	7 cut(s)	39, 84, 560, 592, 1015, 1045, 1357
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	4 cut(s)	15, 388, 484, 647
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	4 cut(s)	264, 442, 1177, 1343
Hpy188I	TCNGA	7 cut(s)	117, 156, 270, 476, 483, 911, 948
Hpy188III	TCNNGA	6 cut(s)	12, 19, 73, 296, 725, 1090
Hpy8I	GTNNAC	4 cut(s)	264, 442, 1177, 1343
HpyCH4III	ACNGT	4 cut(s)	781, 1108, 1174, 1332
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	9 cut(s)	442, 632, 800, 1111, 1208, 1221, 1268, 1310, 1362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 806, 1359
HpyF3I	CTNAG	3 cut(s)	222, 822, 945
HpySE526I	ACGT	1 cut(s)	867
Hsp92II	CATG	7 cut(s)	39, 84, 560, 592, 1015, 1045, 1357
Ksp22I	TGATCA	1 cut(s)	967
Kzo9I	GATC	5 cut(s)	112, 592, 794, 827, 967
LmnI	GCTCC	4 cut(s)	123, 736, 806, 1247
Lsp1109I	GCAGC	2 cut(s)	148, 1205
LweI	GCATC	7 cut(s)	12, 289, 309, 718, 730, 936, 1195
MaeI	CTAG	3 cut(s)	374, 462, 500
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	6 cut(s)	254, 485, 583, 664, 1014, 1326
MalI	GATC	5 cut(s)	114, 594, 796, 829, 969
MboI	GATC	5 cut(s)	112, 592, 794, 827, 967
MboII	GAAGA	4 cut(s)	121, 298, 713, 1047
MfeI	CAATTG	1 cut(s)	894
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	2 cut(s)	444, 811
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	6 cut(s)	150, 505, 654, 729, 831, 954
MseI	TTAA	6 cut(s)	849, 872, 981, 1020, 1053, 1275
MslI	CAYNNNNRTG	2 cut(s)	1106, 1125
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	4 cut(s)	417, 737, 770, 1348
MunI	CAATTG	1 cut(s)	894
Mva1269I	GAATGC	1 cut(s)	1289
MvaI	CCWGG	4 cut(s)	417, 737, 770, 1348
MwoI	GCNNNNNNNGC	3 cut(s)	299, 806, 1359
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	5 cut(s)	112, 592, 794, 827, 967
NlaIII	CATG	7 cut(s)	39, 84, 560, 592, 1015, 1045, 1357
NlaIV	GGNNCC	2 cut(s)	272, 351
NmuCI	GTSAC	3 cut(s)	254, 485, 1014
NspI	RCATGY	2 cut(s)	1015, 1045
OliI	CACNNNNGTG	1 cut(s)	1106
PasI	CCCWGGG	1 cut(s)	1347
PciI	ACATGT	2 cut(s)	1011, 1041
PctI	GAATGC	1 cut(s)	1289
PfeI	GAWTC	3 cut(s)	15, 388, 647
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	27, 163, 1220
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
Ppu21I	YACGTR	1 cut(s)	868
PscI	ACATGT	2 cut(s)	1011, 1041
PshBI	ATTAAT	1 cut(s)	1053
PsiI	TTATAA	2 cut(s)	96, 1194
Psp124BI	GAGCTC	1 cut(s)	811
Psp6I	CCWGG	4 cut(s)	415, 735, 768, 1346
PspGI	CCWGG	4 cut(s)	415, 735, 768, 1346
PspN4I	GGNNCC	2 cut(s)	272, 351
PspPI	GGNCC	3 cut(s)	350, 704, 716
PstI	CTGCAG	1 cut(s)	1364
PsuI	RGATCY	1 cut(s)	794
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	58, 378
RsaNI	GTAC	2 cut(s)	57, 377
RseI	CAYNNNNRTG	2 cut(s)	1106, 1125
SacI	GAGCTC	1 cut(s)	811
SaqAI	TTAA	6 cut(s)	849, 872, 981, 1020, 1053, 1275
SatI	GCNGC	3 cut(s)	26, 162, 1219
Sau3AI	GATC	5 cut(s)	112, 592, 794, 827, 967
Sau96I	GGNCC	3 cut(s)	350, 704, 716
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	4 cut(s)	417, 737, 770, 1348
SduI	GDGCHC	2 cut(s)	444, 811
SfaNI	GCATC	7 cut(s)	12, 289, 309, 718, 730, 936, 1195
SfcI	CTRYAG	1 cut(s)	1360
SinI	GGWCC	2 cut(s)	704, 716
SmiMI	CAYNNNNRTG	2 cut(s)	1106, 1125
SpeI	ACTAGT	2 cut(s)	373, 461
SsiI	CCGC	3 cut(s)	25, 28, 714
SspMI	CTAG	3 cut(s)	374, 462, 500
SstI	GAGCTC	1 cut(s)	811
StyD4I	CCNGG	4 cut(s)	415, 735, 768, 1346
StyI	CCWWGG	2 cut(s)	313, 588
TaaI	ACNGT	4 cut(s)	781, 1108, 1174, 1332
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	2 cut(s)	430, 761
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	15, 388, 647
Tru1I	TTAA	6 cut(s)	849, 872, 981, 1020, 1053, 1275
Tru9I	TTAA	6 cut(s)	849, 872, 981, 1020, 1053, 1275
TscAI	CASTG	3 cut(s)	862, 1111, 1369
TseFI	GTSAC	3 cut(s)	254, 485, 1014
TseI	GCWGC	2 cut(s)	161, 1218
Tsp45I	GTSAC	3 cut(s)	254, 485, 1014
TspDTI	ATGAA	7 cut(s)	24, 173, 411, 545, 660, 779, 1109
TspGWI	ACGGA	2 cut(s)	807, 1036
TspRI	CASTG	3 cut(s)	862, 1111, 1369
Tth111I	GACNNNGTC	1 cut(s)	7
VneI	GTGCAC	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	704, 716
VspI	ATTAAT	1 cut(s)	1053
XapI	RAATTY	4 cut(s)	31, 148, 210, 477
XceI	RCATGY	2 cut(s)	1015, 1045
XmiI	GTMKAC	3 cut(s)	263, 1176, 1342
XspI	CTAG	3 cut(s)	374, 462, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.