Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008230

Physical Location & Seq

Genomic Coordinates Reverse (-)

62098966 .. 62102227

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGCCGCTTCTCGGCTCTCTCTGTTGGCTCTGGTTTCTCTGACCCACATTGCTCTGCTTTCGACTCTCTGTTTCGCGGCGGACCCTTATGTGTTTTACGACTTCAAGGTCTCCTACATCACCGCCTCACCGCTCGGCGTTCCTCAGAGGGTTATAGCAATTAACGGGAAGTTTCCGGGTGATCCTATCAACGCTACTACGAACAACAATGTTGTTGTTAATGTGCATAATGGGCTGGATGAAGACCTCCTCATGACTTGGTCTGGAATCCAGATGCGGCGGAATTCATGGCAGGATGGTGTGCTTGGTACGAATTGCCCAATCCCAAAAACTTGGAACTGGACTTATAACTTCCAAGTCAAGGATCAGATTGGGAGTTTCTTCTACTTCCCATCGCTGAATTTTCAGAGGGCTGCTGGTGGCTTTGGCTCTTTTCATCTCAATAATAGGGAGATAATTGAAATTCCATTTGCTAAGCCTGATGGGGATATTGCTATTATGATTGGTGACTGGTATACTCGGAACCATACGGCATTGAAGACTGCTCTTGATGCTGGAAAAGACCTTGGGATGCCGGATGGAGTTCTCATCAATGGAAAGGGGCCTTATCAATACAACAAGACACTAGTACCTGATGGGATTCAGTATGAAACCATCAATGTTGAACCAGGGAAAACTTATCGACTCCGTGTGCACAATGTTGGTGTTTCAACTAGTTTGAACTTCAGAATTCAGAGTCACAATCTGCTTCTAGCTGAAACAGAGGGATATTATACAATCCAGCAGAACTATACAAACTTTGATATTCATGTTGGACAATCGTATTCTTTTCTTGTTACCATGGATCAAAATGCCAGTAGTGATTACTACATTGTGGCAAGTGCAAGGTTTGTGAATGAATCACTTTGGCAGAGGGTTACAGGTGTTGCTGTCTTACACTATTCAAACTCTAAAGGACCGGTAAGTGGTCCTCTTCCTGATGCTCCCCAGGATGCTTTTGACCCACAATGGTCGATGAATCAGGCATTGACTGTCAGGCAAAACGGTTCTGCAAGTGGAGCTCGCCCTAATCCTCAGGGATCATTTCACTATGGTTCAATTAACATCACTGATACTTACGTGTTAAAAATTGTGCCACCTCTCACAATTGATGGGAAACTCCGAGCAACAATAAATGGCATCTCTTTTGTCAATCCTCAGACACCAATCAGGCTTGCTGATCAGCATAAAGTTAAAGGAGAATATAAGCTTGATTTTCCCAGCATGTCACTTAATAGACTTCCCCGAAGAGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016020 GO:0016491 GO:0016722 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

432

Amino Acids

48.05

Weight (kDa)

7.76

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	37 - 150	1.6e-38	Multicopper oxidase
Cu-oxidase	PF00394	164 - 317	6.4e-45	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25240 AT4G25240 AT5G51480
fragaria_vesca	FvH4_7g27730 FvH4_7g27730 FvH4_7g27730
malus_domestica	MD07G1254600.v1.1 MD11G1195700.v1.1
prunus_persica	Prupe.2G278000_v2.0.a1 Prupe.2G278000_v2.0.a1
pyrus_communis	pycom01g19420 pycom07g22780
rosa_chinensis	RchiOBHm_Chr1g0374521
rosa_laevigata	RLG00000026731
rosa_multiflora	Rmu_ssc0000007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283430
rosa_rugosa	Rorug01G0383900
rosa_samantha	Rh1AG394600 Rh1BG359200 Rh1CG372300 Rh1DG389900
rosa_wichuraiana	Rw1G034160 Rw1G034980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AasI	GACNNNNNNGTC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	515
AccII	CGCG	1 cut(s)	77
AciI	CCGC	7 cut(s)	6, 77, 80, 123, 131, 277, 280
AclWI	GGATC	4 cut(s)	176, 372, 852, 1087
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	283, 400, 462, 729
AcuI	CTGAAG	1 cut(s)	709
AfaI	GTAC	2 cut(s)	310, 630
AfiI	CCNNNNNNNGG	3 cut(s)	12, 361, 965
AflIII	ACRYGT	2 cut(s)	1119, 1293
AgeI	ACCGGT	1 cut(s)	958
AgsI	TTSAA	8 cut(s)	106, 461, 538, 665, 711, 721, 945, 1098
AhlI	ACTAGT	2 cut(s)	625, 713
AjnI	CCWGG	2 cut(s)	667, 987
AluBI	AGCT	3 cut(s)	755, 1061, 1249
AluI	AGCT	3 cut(s)	755, 1061, 1249
Alw21I	GWGCWC	2 cut(s)	696, 1063
Alw26I	GTCTC	2 cut(s)	115, 1284
Alw44I	GTGCAC	1 cut(s)	692
AlwI	GGATC	4 cut(s)	176, 372, 852, 1087
AoxI	GGCC	2 cut(s)	3, 602
ApaLI	GTGCAC	1 cut(s)	692
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	4 cut(s)	283, 400, 462, 729
AsiGI	ACCGGT	1 cut(s)	958
AspS9I	GGNCC	4 cut(s)	82, 602, 956, 968
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	4 cut(s)	112, 120, 191, 518
AvaII	GGWCC	3 cut(s)	82, 956, 968
AxyI	CCTNAGG	1 cut(s)	1074
BaeGI	GKGCMC	1 cut(s)	696
BaeI	ACNNNNGTAYC	4 cut(s)	612, 645, 1104, 1137
BanII	GRGCYC	1 cut(s)	1063
BbsI	GAAGAC	2 cut(s)	249, 545
Bbv12I	GWGCWC	2 cut(s)	696, 1063
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	7 cut(s)	290, 400, 476, 572, 629, 662, 1145
BceAI	ACGGC	1 cut(s)	546
BciT130I	CCWGG	2 cut(s)	669, 989
BclI	TGATCA	1 cut(s)	1219
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	115, 1284
BcuI	ACTAGT	2 cut(s)	625, 713
BfaI	CTAG	3 cut(s)	626, 714, 752
BisI	GCNGC	4 cut(s)	6, 78, 278, 414
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	4 cut(s)	7, 79, 279, 415
Bme1390I	CCNGG	3 cut(s)	177, 669, 989
Bme18I	GGWCC	3 cut(s)	82, 956, 968
BmgT120I	GGNCC	4 cut(s)	82, 602, 956, 968
BmiI	GGNNCC	3 cut(s)	84, 524, 603
BmrFI	CCNGG	3 cut(s)	177, 669, 989
BmsI	GCATC	6 cut(s)	264, 541, 561, 970, 982, 1188
BpiI	GAAGAC	2 cut(s)	249, 545
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	1120
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	4 cut(s)	565, 668, 840, 987
BsaWI	WCCGGW	1 cut(s)	958
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 361, 965
Bse118I	RCCGGY	1 cut(s)	958
Bse1I	ACTGG	3 cut(s)	344, 515, 855
Bse21I	CCTNAGG	1 cut(s)	1074
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	669, 989
BseDI	CCNNGG	4 cut(s)	565, 668, 840, 987
BseGI	GGATG	5 cut(s)	244, 301, 576, 583, 997
BseLI	CCNNNNNNNGG	3 cut(s)	12, 361, 965
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	158, 1088, 1211
BseNI	ACTGG	3 cut(s)	344, 515, 855
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	1 cut(s)	400
BseYI	CCCAGC	1 cut(s)	1259
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	5, 604
BshTI	ACCGGT	1 cut(s)	958
BsiHKAI	GWGCWC	2 cut(s)	696, 1063
BsiSI	CCGG	3 cut(s)	176, 575, 959
BslI	CCNNNNNNNGG	3 cut(s)	12, 361, 965
BsmAI	GTCTC	2 cut(s)	115, 1284
BsnI	GGCC	2 cut(s)	5, 604
Bso31I	GGTCTC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	696, 1063
Bsp143I	GATC	5 cut(s)	181, 364, 844, 1079, 1219
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	7 cut(s)	6, 77, 80, 123, 131, 277, 280
BspANI	GGCC	2 cut(s)	5, 604
BspCNI	CTCAG	3 cut(s)	157, 1087, 1210
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	3 cut(s)	84, 524, 603
BspPI	GGATC	4 cut(s)	176, 372, 852, 1087
BspTNI	GGTCTC	1 cut(s)	115
BsrBI	CCGCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	958
BsrI	ACTGG	3 cut(s)	344, 515, 855
BssAI	RCCGGY	1 cut(s)	958
BssECI	CCNNGG	4 cut(s)	565, 668, 840, 987
BssMI	GATC	5 cut(s)	181, 364, 844, 1079, 1219
BssNAI	GTATAC	1 cut(s)	516
BssT1I	CCWWGG	2 cut(s)	565, 840
Bst1107I	GTATAC	1 cut(s)	516
Bst2UI	CCWGG	2 cut(s)	669, 989
Bst4CI	ACNGT	2 cut(s)	1033, 1046
Bst6I	CTCTTC	2 cut(s)	978, 1282
BstBAI	YACGTR	1 cut(s)	1120
BstC8I	GCNNGC	2 cut(s)	1063, 1215
BstDEI	CTNAG	4 cut(s)	144, 474, 1074, 1197
BstDSI	CCRYGG	1 cut(s)	840
BstF5I	GGATG	5 cut(s)	244, 301, 576, 583, 997
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	5 cut(s)	184, 367, 847, 1082, 1222
BstMAI	GTCTC	2 cut(s)	115, 1284
BstMBI	GATC	5 cut(s)	181, 364, 844, 1079, 1219
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 551, 1058
BstNI	CCWGG	2 cut(s)	669, 989
BstNSI	RCATGY	2 cut(s)	1267, 1297
BstSCI	CCNGG	3 cut(s)	175, 667, 987
BstSLI	GKGCMC	1 cut(s)	696
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	400
BstV2I	GAAGAC	2 cut(s)	249, 545
BstXI	CCANNNNNNTGG	1 cut(s)	333
BstZ17I	GTATAC	1 cut(s)	516
Bsu36I	CCTNAGG	1 cut(s)	1074
BsuRI	GGCC	2 cut(s)	5, 604
BtgI	CCRYGG	1 cut(s)	840
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	5 cut(s)	244, 301, 576, 583, 997
BtsIMutI	CAGTG	1 cut(s)	1107
Cac8I	GCNNGC	2 cut(s)	1063, 1215
CciI	TCATGA	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	958
Cfr13I	GGNCC	4 cut(s)	82, 602, 956, 968
Csp6I	GTAC	2 cut(s)	309, 629
CspAI	ACCGGT	1 cut(s)	958
CviAII	CATG	6 cut(s)	253, 288, 809, 841, 1264, 1294
CviQI	GTAC	2 cut(s)	309, 629
DdeI	CTNAG	4 cut(s)	144, 474, 1074, 1197
DpnI	GATC	5 cut(s)	183, 366, 846, 1081, 1221
DpnII	GATC	5 cut(s)	181, 364, 844, 1079, 1219
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	978, 1282
EarI	CTCTTC	2 cut(s)	978, 1282
EciI	GGCGGA	2 cut(s)	95, 295
Ecl136II	GAGCTC	1 cut(s)	1061
Eco130I	CCWWGG	2 cut(s)	565, 840
Eco24I	GRGCYC	1 cut(s)	1063
Eco31I	GGTCTC	1 cut(s)	115
Eco47I	GGWCC	3 cut(s)	82, 956, 968
Eco53kI	GAGCTC	1 cut(s)	1061
Eco57I	CTGAAG	1 cut(s)	709
Eco81I	CCTNAGG	1 cut(s)	1074
EcoICRI	GAGCTC	1 cut(s)	1061
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRI	GAATTC	2 cut(s)	283, 729
EcoRII	CCWGG	2 cut(s)	667, 987
EcoT14I	CCWWGG	2 cut(s)	565, 840
EcoT38I	GRGCYC	1 cut(s)	1063
ErhI	CCWWGG	2 cut(s)	565, 840
FaeI	CATG	6 cut(s)	256, 291, 812, 844, 1267, 1297
FatI	CATG	6 cut(s)	252, 287, 808, 840, 1263, 1293
FbaI	TGATCA	1 cut(s)	1219
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	4 cut(s)	6, 78, 278, 414
FokI	GGATG	5 cut(s)	251, 308, 583, 590, 1004
FriOI	GRGCYC	1 cut(s)	1063
Fsp4HI	GCNGC	4 cut(s)	6, 78, 278, 414
FspBI	CTAG	3 cut(s)	626, 714, 752
GluI	GCNGC	4 cut(s)	6, 78, 278, 414
GsaI	CCCAGC	1 cut(s)	1263
HaeIII	GGCC	2 cut(s)	5, 604
HapII	CCGG	3 cut(s)	176, 575, 959
Hin1II	CATG	6 cut(s)	256, 291, 812, 844, 1267, 1297
HindIII	AAGCTT	1 cut(s)	1247
HinfI	GANTC	7 cut(s)	64, 267, 640, 684, 736, 899, 1018
HpaII	CCGG	3 cut(s)	176, 575, 959
HphI	GGTGA	4 cut(s)	112, 120, 191, 518
Hpy166II	GTNNAC	2 cut(s)	516, 694
Hpy188I	TCNGA	9 cut(s)	42, 147, 369, 408, 522, 728, 735, 1163, 1200
Hpy188III	TCNNGA	5 cut(s)	253, 264, 271, 548, 977
Hpy8I	GTNNAC	2 cut(s)	516, 694
HpyCH4III	ACNGT	2 cut(s)	1033, 1046
HpyCH4IV	ACGT	1 cut(s)	1119
HpyCH4V	TGCA	4 cut(s)	226, 694, 884, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 551, 1058
HpyF3I	CTNAG	4 cut(s)	144, 474, 1074, 1197
HpySE526I	ACGT	1 cut(s)	1119
Hsp92II	CATG	6 cut(s)	256, 291, 812, 844, 1267, 1297
Ksp22I	TGATCA	1 cut(s)	1219
Kzo9I	GATC	5 cut(s)	181, 364, 844, 1079, 1219
LmnI	GCTCC	2 cut(s)	988, 1058
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	6 cut(s)	264, 541, 561, 970, 982, 1188
MaeI	CTAG	3 cut(s)	626, 714, 752
MaeII	ACGT	1 cut(s)	1119
MaeIII	GTNAC	5 cut(s)	506, 737, 835, 916, 1266
MalI	GATC	5 cut(s)	183, 366, 846, 1081, 1221
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	5 cut(s)	181, 364, 844, 1079, 1219
MboII	GAAGA	5 cut(s)	254, 373, 550, 965, 1299
MfeI	CAATTG	1 cut(s)	1146
MhlI	GDGCHC	2 cut(s)	696, 1063
MlyI	GAGTC	3 cut(s)	58, 678, 745
MmeI	TCCRAC	1 cut(s)	793
MseI	TTAA	6 cut(s)	162, 219, 1101, 1124, 1233, 1272
MspI	CCGG	3 cut(s)	176, 575, 959
MspR9I	CCNGG	3 cut(s)	177, 669, 989
MunI	CAATTG	1 cut(s)	1146
MvaI	CCWGG	2 cut(s)	669, 989
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	232, 551, 1058
NciI	CCSGG	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	5 cut(s)	181, 364, 844, 1079, 1219
NlaIII	CATG	6 cut(s)	256, 291, 812, 844, 1267, 1297
NlaIV	GGNNCC	3 cut(s)	84, 524, 603
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	3 cut(s)	506, 737, 1266
NspI	RCATGY	2 cut(s)	1267, 1297
PagI	TCATGA	1 cut(s)	252
PciI	ACATGT	1 cut(s)	1293
PfeI	GAWTC	4 cut(s)	267, 640, 899, 1018
PflFI	GACNNNGTC	1 cut(s)	259
PinAI	ACCGGT	1 cut(s)	958
PkrI	GCNGC	4 cut(s)	7, 79, 279, 415
PleI	GAGTC	3 cut(s)	58, 678, 744
PpsI	GAGTC	3 cut(s)	58, 678, 744
Ppu21I	YACGTR	1 cut(s)	1120
PscI	ACATGT	1 cut(s)	1293
PsiI	TTATAA	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	1063
Psp6I	CCWGG	2 cut(s)	667, 987
PspFI	CCCAGC	1 cut(s)	1259
PspGI	CCWGG	2 cut(s)	667, 987
PspN4I	GGNNCC	3 cut(s)	84, 524, 603
PspPI	GGNCC	4 cut(s)	82, 602, 956, 968
PsyI	GACNNNGTC	1 cut(s)	259
RsaI	GTAC	2 cut(s)	310, 630
RsaNI	GTAC	2 cut(s)	309, 629
SacI	GAGCTC	1 cut(s)	1063
SaqAI	TTAA	6 cut(s)	162, 219, 1101, 1124, 1233, 1272
SatI	GCNGC	4 cut(s)	6, 78, 278, 414
Sau3AI	GATC	5 cut(s)	181, 364, 844, 1079, 1219
Sau96I	GGNCC	4 cut(s)	82, 602, 956, 968
SchI	GAGTC	3 cut(s)	58, 678, 745
ScrFI	CCNGG	3 cut(s)	177, 669, 989
SduI	GDGCHC	2 cut(s)	696, 1063
SfaNI	GCATC	6 cut(s)	264, 541, 561, 970, 982, 1188
SinI	GGWCC	3 cut(s)	82, 956, 968
SpeI	ACTAGT	2 cut(s)	625, 713
SsiI	CCGC	7 cut(s)	6, 77, 80, 123, 131, 277, 280
SspMI	CTAG	3 cut(s)	626, 714, 752
SstI	GAGCTC	1 cut(s)	1063
StyD4I	CCNGG	3 cut(s)	175, 667, 987
StyI	CCWWGG	2 cut(s)	565, 840
TaaI	ACNGT	2 cut(s)	1033, 1046
TaiI	ACGT	1 cut(s)	1122
TaqI	TCGA	3 cut(s)	62, 682, 1013
TauI	GCSGC	3 cut(s)	8, 80, 280
TfiI	GAWTC	4 cut(s)	267, 640, 899, 1018
Tru1I	TTAA	6 cut(s)	162, 219, 1101, 1124, 1233, 1272
Tru9I	TTAA	6 cut(s)	162, 219, 1101, 1124, 1233, 1272
TscAI	CASTG	1 cut(s)	1114
TseFI	GTSAC	3 cut(s)	506, 737, 1266
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	3 cut(s)	506, 737, 1266
TspDTI	ATGAA	7 cut(s)	255, 276, 425, 663, 797, 912, 1031
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	1 cut(s)	1114
Tth111I	GACNNNGTC	1 cut(s)	259
VneI	GTGCAC	1 cut(s)	692
VpaK11BI	GGWCC	3 cut(s)	82, 956, 968
XapI	RAATTY	4 cut(s)	283, 400, 462, 729
XceI	RCATGY	2 cut(s)	1267, 1297
XmiI	GTMKAC	1 cut(s)	515
XspI	CTAG	3 cut(s)	626, 714, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.