pycom07g23040

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015410
Physical Location & Seq
Forward (+)
24122269 .. 24124172
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 858 bp
ATGATTGAAGTACTATTCTCTACGGATAAATTCTCTCTTATCCAAAAAGCCCAATCGTACAGAAGTCGGTCTCTCTTCCCTAACCGTATAAATAGTCCTCGGCGGTCGTCGTCCGTCCCCGTTCGCATTTCCACAGTTCCCAAATTTCGCACCAAAACCTACACAGTCCAGTCCAATCCATTCCAGATGGGCAATTCGTGCTGCTGCCTCTGTACCTGCATAGACCAAGCGAGCATAGGCATCTTGGAGAGGTGGGGCCGTTTCGAGAGGCTCGCCGAACCCGGTTTCCACCTCCTGAACCCGTTGGCCGGCCAATGGGTTGCCGGCATCCTCTCCACCAGGGTCGCCTCCCTCGACGTCCGCATCGAGACCAAAACCAAGGATAATGTGTTTGTGCAATTGGTCTGCTCAATTCAATACAGGGTGGTGAAAGAGAATGCTGATGATGCGTTTTATGAGCTGCAAAACCCCAAAGAGCAGATTCAAGCTTATGTCTTTGATGTGGTTAGAGCTCTGGTTCCGAGAATGACGCTGGACGAGCTCTTTGAGCAGAAGGGTGAGGTTGCTAAAGCCGTGTTGGAGGAGCTTGAGAAGGTTATGAGAGAATATGGATACAGCATAGAGCACATACTGATGGTTGACATTATACCTGATGCCTCTGTCCGCAAGGCAATGAATGAGATCAATGCAGCTCAAAGGCTCCAGCTAGCCAATGTATACAAAGGAGAAGCAGAGAAGGTGCTTCAGGTGAAAAGGGCAGAAGCTGAAGCCGAGGCCAAGTACCTTGGCGGAGTTGGTGTTGCCAGGCAGAGGCAGGCAATCACCGATGGATTAACAGAGAACATCTTGAATTTCTGA

Protein Analysis

286

Amino Acids

32.27

Weight (kDa)

8.46

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 74 - 246 5.8e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51570
fragaria_vesca FvH4_7g28140
malus_domestica MD01G1185100.v1.1 MD07G1257400.v1.1
prunus_persica Prupe.2G281600_v2.0.a1
pyrus_communis pycom01g19680 pycom07g23040
rosa_chinensis RchiOBHm_Chr1g0375061
rosa_laevigata RLG00000026691
rosa_multiflora Rmu_sc0000554.1_g000014
rosa_roxburghii Rroxscaffold_4G00283050
rosa_rugosa Rorug01G0387900
rosa_samantha Rh1AG398500 Rh1BG362600 Rh1CG376200
rosa_wichuraiana Rw1G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 360
Acc36I ACCTGC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 717
AciI CCGC 4 cut(s) 103, 361, 664, 789
AcoI YGGCCR 2 cut(s) 306, 310
AcsI RAATTY 3 cut(s) 29, 143, 850
AcuI CTGAAG 2 cut(s) 728, 786
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 4 cut(s) 12, 59, 214, 782
AfiI CCNNNNNNNGG 3 cut(s) 308, 315, 810
AgsI TTSAA 4 cut(s) 8, 416, 485, 850
AjnI CCWGG 2 cut(s) 338, 803
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 8 cut(s) 460, 488, 512, 541, 586, 692, 706, 764
AluI AGCT 8 cut(s) 460, 488, 512, 541, 586, 692, 706, 764
Alw21I GWGCWC 3 cut(s) 514, 543, 627
Alw26I GTCTC 2 cut(s) 75, 362
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 4 cut(s) 256, 306, 310, 774
ApeKI GCWGC 4 cut(s) 201, 204, 460, 689
ApoI RAATTY 3 cut(s) 29, 143, 850
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 4 cut(s) 439, 569, 760, 814
AsuNHI GCTAGC 1 cut(s) 706
BanII GRGCYC 2 cut(s) 514, 543
Bbv12I GWGCWC 3 cut(s) 514, 543, 627
BbvI GCAGC 4 cut(s) 188, 191, 447, 701
BccI CCATC 3 cut(s) 181, 628, 821
BceAI ACGGC 2 cut(s) 243, 557
BciT130I CCWGG 2 cut(s) 340, 805
BciVI GTATCC 1 cut(s) 605
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 75, 362
BfaI CTAG 1 cut(s) 707
BfuAI ACCTGC 1 cut(s) 224
BfuI GTATCC 1 cut(s) 605
BisI GCNGC 4 cut(s) 202, 205, 461, 690
BlsI GCNGC 4 cut(s) 203, 206, 462, 691
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 3 cut(s) 282, 340, 805
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 3 cut(s) 257, 519, 701
BmrFI CCNGG 3 cut(s) 282, 340, 805
BmsI GCATC 5 cut(s) 249, 336, 372, 436, 643
BmtI GCTAGC 1 cut(s) 710
BpmI CTGGAG 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 2 cut(s) 75, 362
BsaJI CCNNGG 5 cut(s) 98, 339, 378, 771, 784
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 315, 810
Bse118I RCCGGY 2 cut(s) 308, 323
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 2 cut(s) 340, 805
BseDI CCNNGG 5 cut(s) 98, 339, 378, 771, 784
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 3 cut(s) 308, 315, 810
BseMI GCAATG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 4 cut(s) 188, 191, 447, 701
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 4 cut(s) 258, 308, 312, 776
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 3 cut(s) 514, 543, 627
BsiSI CCGG 3 cut(s) 282, 309, 324
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 308, 315, 810
BsmAI GTCTC 2 cut(s) 75, 362
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 4 cut(s) 258, 308, 312, 776
Bso31I GGTCTC 2 cut(s) 75, 362
Bsp1286I GDGCHC 3 cut(s) 514, 543, 627
Bsp143I GATC 1 cut(s) 681
BspACI CCGC 4 cut(s) 103, 361, 664, 789
BspANI GGCC 4 cut(s) 258, 308, 312, 776
BspLI GGNNCC 3 cut(s) 257, 519, 701
BspMI ACCTGC 1 cut(s) 224
BspOI GCTAGC 1 cut(s) 710
BspTNI GGTCTC 2 cut(s) 75, 362
BsrDI GCAATG 1 cut(s) 678
BsrFI RCCGGY 2 cut(s) 308, 323
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 2 cut(s) 308, 323
BssECI CCNNGG 5 cut(s) 98, 339, 378, 771, 784
BssMI GATC 1 cut(s) 681
BssNAI GTATAC 1 cut(s) 718
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 2 cut(s) 378, 784
Bst1107I GTATAC 1 cut(s) 718
Bst2UI CCWGG 2 cut(s) 340, 805
Bst4CI ACNGT 3 cut(s) 86, 136, 166
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 198
BstC8I GCNNGC 6 cut(s) 232, 273, 310, 325, 708, 816
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 1 cut(s) 684
BstMAI GTCTC 2 cut(s) 75, 362
BstMBI GATC 1 cut(s) 681
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 4 cut(s) 198, 446, 538, 547
BstNI CCWGG 2 cut(s) 340, 805
BstSCI CCNGG 3 cut(s) 280, 338, 803
BstV1I GCAGC 4 cut(s) 188, 191, 447, 701
BstZ17I GTATAC 1 cut(s) 718
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 4 cut(s) 258, 308, 312, 776
BtsCI GGATG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 6 cut(s) 232, 273, 310, 325, 708, 816
CaiI CAGNNNCTG 1 cut(s) 764
Cfr10I RCCGGY 2 cut(s) 308, 323
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 538
Csp6I GTAC 4 cut(s) 11, 58, 213, 781
CviQI GTAC 4 cut(s) 11, 58, 213, 781
DpnI GATC 1 cut(s) 683
DpnII GATC 1 cut(s) 681
EaeI YGGCCR 2 cut(s) 306, 310
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 804
Ecl136II GAGCTC 2 cut(s) 512, 541
Eco130I CCWWGG 2 cut(s) 378, 784
Eco24I GRGCYC 2 cut(s) 514, 543
Eco31I GGTCTC 2 cut(s) 75, 362
Eco53kI GAGCTC 2 cut(s) 512, 541
Eco57I CTGAAG 2 cut(s) 728, 786
EcoICRI GAGCTC 2 cut(s) 512, 541
EcoRII CCWGG 2 cut(s) 338, 803
EcoT14I CCWWGG 2 cut(s) 378, 784
EcoT38I GRGCYC 2 cut(s) 514, 543
ErhI CCWWGG 2 cut(s) 378, 784
FaqI GGGAC 1 cut(s) 101
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 4 cut(s) 202, 205, 461, 690
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 2 cut(s) 514, 543
FseI GGCCGGCC 1 cut(s) 312
Fsp4HI GCNGC 4 cut(s) 202, 205, 461, 690
FspBI CTAG 1 cut(s) 707
GluI GCNGC 4 cut(s) 202, 205, 461, 690
GsuI CTGGAG 1 cut(s) 686
HaeIII GGCC 4 cut(s) 258, 308, 312, 776
HapII CCGG 3 cut(s) 282, 309, 324
HgaI GACGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 357
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 1 cut(s) 481
HpaII CCGG 3 cut(s) 282, 309, 324
HphI GGTGA 4 cut(s) 439, 569, 760, 814
Hpy166II GTNNAC 2 cut(s) 640, 718
Hpy188I TCNGA 2 cut(s) 522, 857
Hpy188III TCNNGA 5 cut(s) 184, 265, 295, 367, 847
Hpy8I GTNNAC 2 cut(s) 640, 718
Hpy99I CGWCG 2 cut(s) 112, 359
HpyAV CCTTC 3 cut(s) 547, 586, 730
HpyCH4III ACNGT 3 cut(s) 86, 136, 166
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 4 cut(s) 219, 397, 463, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 198, 446, 538, 547
HpySE526I ACGT 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 357
KroI GCCGGC 2 cut(s) 308, 323
KroNI GCCGGC 2 cut(s) 310, 325
Kzo9I GATC 1 cut(s) 681
LmnI GCTCC 2 cut(s) 583, 705
Lsp1109I GCAGC 4 cut(s) 188, 191, 447, 701
LweI GCATC 5 cut(s) 249, 336, 372, 436, 643
MaeI CTAG 1 cut(s) 707
MaeII ACGT 1 cut(s) 357
MalI GATC 1 cut(s) 683
MboI GATC 1 cut(s) 681
MboII GAAGA 1 cut(s) 67
MfeI CAATTG 1 cut(s) 398
MhlI GDGCHC 3 cut(s) 514, 543, 627
MluCI AATT 6 cut(s) 29, 143, 193, 398, 411, 850
MmeI TCCRAC 1 cut(s) 558
MroNI GCCGGC 2 cut(s) 308, 323
MseI TTAA 1 cut(s) 833
MslI CAYNNNNRTG 1 cut(s) 632
MspI CCGG 3 cut(s) 282, 309, 324
MspR9I CCNGG 3 cut(s) 282, 340, 805
MunI CAATTG 1 cut(s) 398
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 2 cut(s) 340, 805
MwoI GCNNNNNNNGC 4 cut(s) 198, 446, 538, 547
NaeI GCCGGC 2 cut(s) 310, 325
NciI CCSGG 1 cut(s) 282
NdeII GATC 1 cut(s) 681
NgoMIV GCCGGC 2 cut(s) 308, 323
NheI GCTAGC 1 cut(s) 706
NlaIV GGNNCC 3 cut(s) 257, 519, 701
NmeAIII GCCGAG 2 cut(s) 79, 796
PcsI WCGNNNNNNNCGW 2 cut(s) 351, 363
PctI GAATGC 1 cut(s) 442
PdiI GCCGGC 2 cut(s) 310, 325
PfeI GAWTC 1 cut(s) 481
PkrI GCNGC 4 cut(s) 203, 206, 462, 691
Psp124BI GAGCTC 2 cut(s) 514, 543
Psp6I CCWGG 2 cut(s) 338, 803
PspGI CCWGG 2 cut(s) 338, 803
PspN4I GGNNCC 3 cut(s) 257, 519, 701
PspPI GGNCC 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 764
RigI GGCCGGCC 1 cut(s) 312
RsaI GTAC 4 cut(s) 12, 59, 214, 782
RsaNI GTAC 4 cut(s) 11, 58, 213, 781
RseI CAYNNNNRTG 1 cut(s) 632
SacI GAGCTC 2 cut(s) 514, 543
SaqAI TTAA 1 cut(s) 833
SatI GCNGC 4 cut(s) 202, 205, 461, 690
Sau3AI GATC 1 cut(s) 681
Sau96I GGNCC 1 cut(s) 256
ScaI AGTACT 1 cut(s) 12
ScrFI CCNGG 3 cut(s) 282, 340, 805
SduI GDGCHC 3 cut(s) 514, 543, 627
SfaNI GCATC 5 cut(s) 249, 336, 372, 436, 643
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
Sse9I AATT 6 cut(s) 29, 143, 193, 398, 411, 850
SsiI CCGC 4 cut(s) 103, 361, 664, 789
SspMI CTAG 1 cut(s) 707
SstI GAGCTC 2 cut(s) 514, 543
StyD4I CCNGG 3 cut(s) 280, 338, 803
StyI CCWWGG 2 cut(s) 378, 784
TaaI ACNGT 3 cut(s) 86, 136, 166
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 264, 354, 366
TaqII GACCGA 1 cut(s) 57
TasI AATT 6 cut(s) 29, 143, 193, 398, 411, 850
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 1 cut(s) 833
Tru9I TTAA 1 cut(s) 833
TseI GCWGC 4 cut(s) 201, 204, 460, 689
TspDTI ATGAA 1 cut(s) 689
TspGWI ACGGA 2 cut(s) 38, 103
XapI RAATTY 3 cut(s) 29, 143, 850
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 1 cut(s) 707
ZraI GACGTC 1 cut(s) 358
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.