pycom07g24500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0018118
Physical Location & Seq
Reverse (-)
25190356 .. 25190625
270 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g24500.1

Sequence Viewer

Length: 270 bp
ATGAGAATTTGTAGACTCTCTCCTGTGATTATGCTCTTTGTTGTGATTCTAGCACTAGCTCATGATTCGAGTTGCCGGTGCATCACCTGGTCCTGGCATGGCAGCAAGGATTCGGAATCAAGACTAAGAGTCAAGTTTTCGTCTCTCTTTGCACGGCGCCTTGGTGCCGGTTCTCATTATTCTGCAGGATTTGGATACAAGAAGATGAACGGAATAAATGTTGTTGCTCACAAAGCTGTCCCCGGAGGACCAAATCCACTTCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.81

Weight (kDa)

10.38

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018118)

Species Orthologous Gene IDs
prunus_persica Prupe.2G292900_v2.0.a1
pyrus_communis pycom07g24500
rosa_chinensis RchiOBHm_Chr1g0377041
rosa_roxburghii Rroxscaffold_4G00281480
rosa_rugosa Rorug01G0401200 Rorug01G0401200
rosa_samantha Rh1AG418200 Rh1AG418300 Rh1BG377400 Rh1CG391400 Rh1DG408100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 156, 164
AccI GTMKAC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 6
AcyI GRCGYC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 93
AhdI GACNNNNNGTC 1 cut(s) 128
AjnI CCWGG 2 cut(s) 86, 92
AluBI AGCT 2 cut(s) 59, 236
AluI AGCT 2 cut(s) 59, 236
Alw26I GTCTC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 6
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 90, 248
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 90, 248
BanI GGYRCC 2 cut(s) 156, 164
BbvI GCAGC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 88, 94
BciVI GTATCC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 2 cut(s) 50, 56
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 160
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 3 cut(s) 88, 94, 243
Bme18I GGWCC 2 cut(s) 90, 248
BmeRI GACNNNNNGTC 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 90, 248
BmiI GGNNCC 2 cut(s) 158, 166
BmrFI CCNGG 3 cut(s) 88, 94, 243
BmsI GCATC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 160, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse118I RCCGGY 2 cut(s) 75, 167
BseBI CCWGG 2 cut(s) 88, 94
BseDI CCNNGG 2 cut(s) 160, 241
BseLI CCNNNNNNNGG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 114
BshNI GGYRCC 2 cut(s) 156, 164
BsiSI CCGG 3 cut(s) 76, 168, 243
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 224
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 158, 166
BspMAI CTGCAG 1 cut(s) 187
BspT107I GGYRCC 2 cut(s) 156, 164
BsrFI RCCGGY 2 cut(s) 75, 167
BssAI RCCGGY 2 cut(s) 75, 167
BssECI CCNNGG 2 cut(s) 160, 241
BssNI GRCGYC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 88, 94
BstACI GRCGYC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 2 cut(s) 88, 94
BstSCI CCNGG 3 cut(s) 86, 92, 241
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 114
BsuI GTATCC 1 cut(s) 188
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 2 cut(s) 75, 167
Cfr13I GGNCC 2 cut(s) 90, 248
CsiI ACCWGGT 1 cut(s) 86
CviAII CATG 2 cut(s) 62, 98
CviJI RGCY 2 cut(s) 59, 236
CviKI_1 RGCY 2 cut(s) 59, 236
DdeI CTNAG 1 cut(s) 125
DinI GGCGCC 1 cut(s) 158
DriI GACNNNNNGTC 1 cut(s) 128
Eam1105I GACNNNNNGTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 90, 248
EcoRII CCWGG 2 cut(s) 86, 92
EcoT14I CCWWGG 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 158
EheI GGCGCC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 2 cut(s) 65, 101
FaiI YATR 3 cut(s) 32, 63, 99
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 61, 97
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 2 cut(s) 50, 56
GlaI GCGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 160
HapII CCGG 3 cut(s) 76, 168, 243
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 2 cut(s) 65, 101
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 6 cut(s) 15, 46, 65, 110, 116, 129
HpaII CCGG 3 cut(s) 76, 168, 243
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 62, 120
Hpy8I GTNNAC 1 cut(s) 14
HpyCH4V TGCA 3 cut(s) 81, 152, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 2 cut(s) 65, 101
HspAI GCGC 1 cut(s) 157
KasI GGCGCC 1 cut(s) 156
LpnPI CCDG 9 cut(s) 36, 73, 79, 89, 100, 106, 171, 181, 256
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 90
MabI ACCWGGT 1 cut(s) 86
MaeI CTAG 2 cut(s) 50, 56
MboII GAAGA 1 cut(s) 214
MluCI AATT 1 cut(s) 6
Mly113I GGCGCC 1 cut(s) 157
MlyI GAGTC 2 cut(s) 9, 138
MnlI CCTC 1 cut(s) 239
MspI CCGG 3 cut(s) 76, 168, 243
MspR9I CCNGG 3 cut(s) 88, 94, 243
MvaI CCWGG 2 cut(s) 88, 94
MwoI GCNNNNNNNGC 1 cut(s) 233
NarI GGCGCC 1 cut(s) 157
NciI CCSGG 1 cut(s) 243
NlaIII CATG 2 cut(s) 65, 101
NlaIV GGNNCC 2 cut(s) 158, 166
PagI TCATGA 1 cut(s) 61
PfeI GAWTC 4 cut(s) 46, 65, 110, 116
PkrI GCNGC 1 cut(s) 104
PleI GAGTC 2 cut(s) 9, 137
PluTI GGCGCC 1 cut(s) 160
PpsI GAGTC 2 cut(s) 9, 137
Psp6I CCWGG 2 cut(s) 86, 92
PspGI CCWGG 2 cut(s) 86, 92
PspN4I GGNNCC 2 cut(s) 158, 166
PspPI GGNCC 2 cut(s) 90, 248
PstI CTGCAG 1 cut(s) 187
SatI GCNGC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 90, 248
SchI GAGTC 2 cut(s) 9, 138
ScrFI CCNGG 3 cut(s) 88, 94, 243
SetI ASST 3 cut(s) 61, 89, 238
SexAI ACCWGGT 1 cut(s) 86
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 158
SinI GGWCC 2 cut(s) 90, 248
Sse9I AATT 1 cut(s) 6
SspDI GGCGCC 1 cut(s) 156
SspMI CTAG 2 cut(s) 50, 56
StyD4I CCNGG 3 cut(s) 86, 92, 241
StyI CCWWGG 1 cut(s) 160
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 6
TfiI GAWTC 4 cut(s) 46, 65, 110, 116
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 90, 248
XapI RAATTY 1 cut(s) 6
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 2 cut(s) 50, 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.