Rh1AG418200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018118
Physical Location & Seq
Reverse (-)
64966047 .. 64966328
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG418200.1

Sequence Viewer

Length: 282 bp
ATGAGAATTTCTAAACTCTCTCCTGTGTTTATGAGCATTCTTGTCATTCTAGCTCTAGTTAATGTTTCTAGTAGCCGGCGGCACATAAGCTGGTGCTGTACTAGCAGTGAAGAAGTTCAAGAAATGAAACCTAAACTGAGAGTAAGAGCCAGGTTTTCTTTCGAATTCAGACGTCTTAGTGCTGGCTTGCATTCTGCAGGGTTTCGATGTAAGAAGATGAACAAGATAAGTACTGTTGCTCATCAAGCTGTCCCTGGTGGACCAAACCCTCTTCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.47

Weight (kDa)

11.24

Isoelectric Point (pI)

72.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018118)

Species Orthologous Gene IDs
prunus_persica Prupe.2G292900_v2.0.a1
pyrus_communis pycom07g24500
rosa_chinensis RchiOBHm_Chr1g0377041
rosa_roxburghii Rroxscaffold_4G00281480
rosa_rugosa Rorug01G0401200 Rorug01G0401200
rosa_samantha Rh1AG418200 Rh1AG418300 Rh1BG377400 Rh1CG391400 Rh1DG408100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 175
AciI CCGC 1 cut(s) 79
AcsI RAATTY 2 cut(s) 6, 164
AcyI GRCGYC 1 cut(s) 172
AfaI GTAC 2 cut(s) 100, 232
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 2 cut(s) 149, 253
AluBI AGCT 3 cut(s) 53, 90, 248
AluI AGCT 3 cut(s) 53, 90, 248
ApoI RAATTY 2 cut(s) 6, 164
Asp700I GAANNNNTTC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 260
AsuII TTCGAA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 151, 255
BfaI CTAG 4 cut(s) 50, 56, 69, 102
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmcAI AGTACT 1 cut(s) 232
Bme1390I CCNGG 2 cut(s) 151, 255
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 2 cut(s) 151, 255
Bpu14I TTCGAA 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 75
BseBI CCWGG 2 cut(s) 151, 255
BseDI CCNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 2 cut(s) 36, 190
Bsp119I TTCGAA 1 cut(s) 162
BspACI CCGC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 199
BspT104I TTCGAA 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 253
BssNI GRCGYC 1 cut(s) 172
Bst2UI CCWGG 2 cut(s) 151, 255
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 77, 184, 188
BstDEI CTNAG 2 cut(s) 137, 176
BstMWI GCNNNNNNNGC 2 cut(s) 102, 245
BstNI CCWGG 2 cut(s) 151, 255
BstSCI CCNGG 2 cut(s) 149, 253
BstSFI CTRYAG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 77, 184, 188
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 99, 231
CviJI RGCY 6 cut(s) 53, 75, 90, 149, 186, 248
CviKI_1 RGCY 6 cut(s) 53, 75, 90, 149, 186, 248
CviQI GTAC 2 cut(s) 99, 231
DdeI CTNAG 2 cut(s) 137, 176
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 149, 253
FaiI YATR 2 cut(s) 32, 86
FaqI GGGAC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 4 cut(s) 50, 56, 69, 102
GluI GCNGC 1 cut(s) 80
HapII CCGG 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 172
HpaII CCGG 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 190, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 245
HpyF3I CTNAG 2 cut(s) 137, 176
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 172
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
LpnPI CCDG 9 cut(s) 36, 76, 89, 136, 163, 168, 183, 240, 267
MaeI CTAG 4 cut(s) 50, 56, 69, 102
MaeII ACGT 1 cut(s) 172
MboII GAAGA 3 cut(s) 122, 226, 263
MluCI AATT 3 cut(s) 6, 164, 277
MnlI CCTC 1 cut(s) 279
MroNI GCCGGC 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 2 cut(s) 60, 280
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 151, 255
Mva1269I GAATGC 2 cut(s) 36, 190
MvaI CCWGG 2 cut(s) 151, 255
MwoI GCNNNNNNNGC 2 cut(s) 102, 245
NaeI GCCGGC 1 cut(s) 77
NgoMIV GCCGGC 1 cut(s) 75
NspV TTCGAA 1 cut(s) 162
PctI GAATGC 2 cut(s) 36, 190
PdiI GCCGGC 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 149, 253
PspGI CCWGG 2 cut(s) 149, 253
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 199
RsaI GTAC 2 cut(s) 100, 232
RsaNI GTAC 2 cut(s) 99, 231
SaqAI TTAA 2 cut(s) 60, 280
SatI GCNGC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 232
ScrFI CCNGG 2 cut(s) 151, 255
SetI ASST 6 cut(s) 55, 92, 133, 155, 175, 250
SfcI CTRYAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 162
SinI GGWCC 1 cut(s) 260
Sse9I AATT 3 cut(s) 6, 164, 277
SsiI CCGC 1 cut(s) 79
SspMI CTAG 4 cut(s) 50, 56, 69, 102
StyD4I CCNGG 2 cut(s) 149, 253
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 162, 205
TasI AATT 3 cut(s) 6, 164, 277
TatI WGTACW 2 cut(s) 98, 230
TauI GCSGC 1 cut(s) 82
Tru1I TTAA 2 cut(s) 60, 280
Tru9I TTAA 2 cut(s) 60, 280
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 140, 233
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 2 cut(s) 6, 164
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 4 cut(s) 50, 56, 69, 102
ZraI GACGTC 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.