Rh1CG391400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018118
Physical Location & Seq
Reverse (-)
65964650 .. 65965094
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG391400.1

Sequence Viewer

Length: 294 bp
ATGCATTTTGGATGTTTCTCACCACAGGTTTGCGCAAAAGATGTTAAAATTGACGAGACAATACAAAAGGCTCTACTTCATGTTTCTGGTTGCCTGCGGCACATCACCGGGTGCTGTACCAGCAGTGAAGAAGTTCAATCCAAACCGAGAGTAAGAGCCGGGGTTTCTACTGAATTTAGGCATCTTGGTGCAGCTGATTCGCATACTGCAGGATCTCGATATAAGAAGACGAACCAAATAAGCGCTGTTGCTCATCAAGCTGTCCCTAGTGGACCAAACCCTCTTCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.44

Weight (kDa)

8.97

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018118)

Species Orthologous Gene IDs
prunus_persica Prupe.2G292900_v2.0.a1
pyrus_communis pycom07g24500
rosa_chinensis RchiOBHm_Chr1g0377041
rosa_roxburghii Rroxscaffold_4G00281480
rosa_rugosa Rorug01G0401200 Rorug01G0401200
rosa_samantha Rh1AG418200 Rh1AG418300 Rh1BG377400 Rh1CG391400 Rh1DG408100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 34
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 173
AdeI CACNNNGTG 1 cut(s) 111
AfaI GTAC 1 cut(s) 118
AfeI AGCGCT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 137
AluBI AGCT 2 cut(s) 194, 260
AluI AGCT 2 cut(s) 194, 260
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 220
Aor51HI AGCGCT 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 2 cut(s) 35, 245
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 2 cut(s) 109, 160
AsuHPI GGTGA 2 cut(s) 12, 97
AvaII GGWCC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BcnI CCSGG 2 cut(s) 109, 160
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 2 cut(s) 98, 192
BlsI GCNGC 2 cut(s) 99, 193
Bme1390I CCNGG 2 cut(s) 109, 160
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 2 cut(s) 109, 160
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 233
BpuMI CCSGG 2 cut(s) 109, 160
BsaJI CCNNGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 108, 159
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 35, 245
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 2 cut(s) 120, 257
BstSCI CCNGG 2 cut(s) 107, 158
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 95
CfoI GCGC 2 cut(s) 35, 245
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 117
CviAII CATG 1 cut(s) 80
CviJI RGCY 4 cut(s) 71, 158, 194, 260
CviKI_1 RGCY 4 cut(s) 71, 158, 194, 260
CviQI GTAC 1 cut(s) 117
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
DraIII CACNNNGTG 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 272
Eco47III AGCGCT 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 83
FaiI YATR 3 cut(s) 81, 204, 222
FaqI GGGAC 1 cut(s) 248
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 98, 192
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 98, 192
FspBI CTAG 1 cut(s) 267
FspI TGCGCA 1 cut(s) 34
GlaI GCGC 2 cut(s) 34, 244
GluI GCNGC 2 cut(s) 98, 192
HaeII RGCGCY 1 cut(s) 246
HapII CCGG 2 cut(s) 108, 159
HhaI GCGC 2 cut(s) 35, 245
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 2 cut(s) 33, 243
HinP1I GCGC 2 cut(s) 33, 243
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 108, 159
HphI GGTGA 2 cut(s) 12, 97
Hpy166II GTNNAC 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 4, 191, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 257
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 2 cut(s) 33, 243
Kzo9I GATC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 11, 72, 107, 121, 133, 172, 195
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 267
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 3 cut(s) 140, 238, 275
MflI RGATCY 1 cut(s) 212
MluCI AATT 3 cut(s) 48, 173, 289
MnlI CCTC 1 cut(s) 291
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 45, 292
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 2 cut(s) 108, 159
MspR9I CCNGG 2 cut(s) 109, 160
MwoI GCNNNNNNNGC 2 cut(s) 120, 257
NciI CCSGG 2 cut(s) 109, 160
NdeII GATC 1 cut(s) 212
NlaIII CATG 1 cut(s) 83
NsbI TGCGCA 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 99, 193
PspPI GGNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 2 cut(s) 45, 292
SatI GCNGC 2 cut(s) 98, 192
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 109, 160
SetI ASST 3 cut(s) 30, 196, 262
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 3 cut(s) 48, 173, 289
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 107, 158
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 48, 173, 289
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 2 cut(s) 45, 292
Tru9I TTAA 2 cut(s) 45, 292
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.