Rh1AG418300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018118
Physical Location & Seq
Reverse (-)
64969268 .. 64969543
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG418300.1

Sequence Viewer

Length: 276 bp
ATGAGAATTCCTAAACTCTCTCACTTCATGTTCATTGTTGTCATTCTAGCTCTACTTCATGTTTCTGGTTGCCTGCGGCACATCACCGGGTGCTGTACCAGCAGTGAAGAAGTTCAATCCAAACCGAGAGTAGGAGCCGGGGTTTCTACTGATGAATTTAGGCATCTTGGTGCAGCTGATTCGCATACTGCAGGATCTCGATATAAGAAGATGAACCAAATAAGCGCTGTTGCTCATCAAGCTGTCCCTAGTGGACCAAACCCTCTTCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.8

Weight (kDa)

9.35

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018118)

Species Orthologous Gene IDs
prunus_persica Prupe.2G292900_v2.0.a1
pyrus_communis pycom07g24500
rosa_chinensis RchiOBHm_Chr1g0377041
rosa_roxburghii Rroxscaffold_4G00281480
rosa_rugosa Rorug01G0401200 Rorug01G0401200
rosa_samantha Rh1AG418200 Rh1AG418300 Rh1BG377400 Rh1CG391400 Rh1DG408100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 76
AclWI GGATC 1 cut(s) 202
AcsI RAATTY 2 cut(s) 6, 155
AdeI CACNNNGTG 1 cut(s) 90
AfaI GTAC 1 cut(s) 97
AfeI AGCGCT 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 3 cut(s) 50, 176, 242
AluI AGCT 3 cut(s) 50, 176, 242
AlwI GGATC 1 cut(s) 202
Aor51HI AGCGCT 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 2 cut(s) 6, 155
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 2 cut(s) 88, 139
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BcnI CCSGG 2 cut(s) 88, 139
BfaI CTAG 2 cut(s) 47, 249
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 2 cut(s) 77, 174
BlsI GCNGC 2 cut(s) 78, 175
Bme1390I CCNGG 2 cut(s) 88, 139
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 88, 139
BmsI GCATC 1 cut(s) 172
BpuMI CCSGG 2 cut(s) 88, 139
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 192
BsiSI CCGG 2 cut(s) 87, 138
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 197
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 2 cut(s) 99, 239
BstSCI CCNGG 2 cut(s) 86, 137
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 96
CviAII CATG 2 cut(s) 28, 59
CviJI RGCY 4 cut(s) 50, 137, 176, 242
CviKI_1 RGCY 4 cut(s) 50, 137, 176, 242
CviQI GTAC 1 cut(s) 96
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
DraIII CACNNNGTG 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 254
Eco47III AGCGCT 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 6
FaeI CATG 2 cut(s) 31, 62
FaiI YATR 4 cut(s) 29, 60, 186, 204
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 27, 58
Fnu4HI GCNGC 2 cut(s) 77, 174
Fsp4HI GCNGC 2 cut(s) 77, 174
FspBI CTAG 2 cut(s) 47, 249
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 77, 174
HaeII RGCGCY 1 cut(s) 228
HapII CCGG 2 cut(s) 87, 138
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 31, 62
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 1 cut(s) 179
HpaII CCGG 2 cut(s) 87, 138
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 173, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 239
Hsp92II CATG 2 cut(s) 31, 62
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 6 cut(s) 51, 86, 100, 112, 151, 177
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 1 cut(s) 172
MaeI CTAG 2 cut(s) 47, 249
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 3 cut(s) 119, 220, 257
MflI RGATCY 1 cut(s) 194
MluCI AATT 3 cut(s) 6, 155, 271
MnlI CCTC 1 cut(s) 273
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 2 cut(s) 87, 138
MspR9I CCNGG 2 cut(s) 88, 139
MwoI GCNNNNNNNGC 2 cut(s) 99, 239
NciI CCSGG 2 cut(s) 88, 139
NdeII GATC 1 cut(s) 194
NlaIII CATG 2 cut(s) 31, 62
NlaIV GGNNCC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 2 cut(s) 78, 175
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 254
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 2 cut(s) 77, 174
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 88, 139
SetI ASST 3 cut(s) 52, 178, 244
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 189
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 3 cut(s) 6, 155, 271
SsiI CCGC 1 cut(s) 76
SspMI CTAG 2 cut(s) 47, 249
StyD4I CCNGG 2 cut(s) 86, 137
TaqI TCGA 1 cut(s) 199
TasI AATT 3 cut(s) 6, 155, 271
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TscAI CASTG 1 cut(s) 109
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 5 cut(s) 16, 22, 47, 168, 227
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 2 cut(s) 6, 155
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 2 cut(s) 47, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.