Rh1DG408100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018118
Physical Location & Seq
Reverse (-)
62628910 .. 62629182
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG408100.1

Sequence Viewer

Length: 273 bp
ATGAGAATTCCTAAACTCTCTCTCTTTATGTTCATTGTTGTCCTTCTAGCTCTACTTCATGTTTCTGGTTGCCTGCGGCACATCACCGGGTGCTGTACCAGCAGTGAAGAAGTTCAATCCAAACCGAGAGTAAGAGCCGGGGTTTCTACTGAATTTAGGCATCTTGGTGCAGCTGATTCGCATACTGCAGGATCTCGATATAAGAAGACGAACCAAATAAGCGCTGTTGCTCATCAAGCTGTCCCTAGTGGACCAAACCCTCTTCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.73

Weight (kDa)

9.92

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018118)

Species Orthologous Gene IDs
prunus_persica Prupe.2G292900_v2.0.a1
pyrus_communis pycom07g24500
rosa_chinensis RchiOBHm_Chr1g0377041
rosa_roxburghii Rroxscaffold_4G00281480
rosa_rugosa Rorug01G0401200 Rorug01G0401200
rosa_samantha Rh1AG418200 Rh1AG418300 Rh1BG377400 Rh1CG391400 Rh1DG408100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 76
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 2 cut(s) 6, 152
AdeI CACNNNGTG 1 cut(s) 90
AfaI GTAC 1 cut(s) 97
AfeI AGCGCT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 3 cut(s) 50, 173, 239
AluI AGCT 3 cut(s) 50, 173, 239
AlwI GGATC 1 cut(s) 199
Aor51HI AGCGCT 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 6, 152
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 2 cut(s) 88, 139
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 182
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BcnI CCSGG 2 cut(s) 88, 139
BfaI CTAG 2 cut(s) 47, 246
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 2 cut(s) 77, 171
BlsI GCNGC 2 cut(s) 78, 172
Bme1390I CCNGG 2 cut(s) 88, 139
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 88, 139
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 88, 139
BsaJI CCNNGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 182
BsgI GTGCAG 1 cut(s) 189
BsiSI CCGG 2 cut(s) 87, 138
BslFI GGGAC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 194
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 99, 236
BstSCI CCNGG 2 cut(s) 86, 137
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 59
CviJI RGCY 4 cut(s) 50, 137, 173, 239
CviKI_1 RGCY 4 cut(s) 50, 137, 173, 239
CviQI GTAC 1 cut(s) 96
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
DraIII CACNNNGTG 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 251
Eco47III AGCGCT 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 6
FaeI CATG 1 cut(s) 62
FaiI YATR 4 cut(s) 29, 60, 183, 201
FaqI GGGAC 1 cut(s) 227
FatI CATG 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 77, 171
Fsp4HI GCNGC 2 cut(s) 77, 171
FspBI CTAG 2 cut(s) 47, 246
GlaI GCGC 1 cut(s) 223
GluI GCNGC 2 cut(s) 77, 171
HaeII RGCGCY 1 cut(s) 225
HapII CCGG 2 cut(s) 87, 138
HhaI GCGC 1 cut(s) 224
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 1 cut(s) 176
HpaII CCGG 2 cut(s) 87, 138
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 170, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 236
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 191
LpnPI CCDG 6 cut(s) 51, 86, 100, 112, 151, 174
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 47, 246
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 3 cut(s) 119, 217, 254
MflI RGATCY 1 cut(s) 191
MluCI AATT 3 cut(s) 6, 152, 268
MnlI CCTC 1 cut(s) 270
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 1 cut(s) 271
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 87, 138
MspR9I CCNGG 2 cut(s) 88, 139
MwoI GCNNNNNNNGC 2 cut(s) 99, 236
NciI CCSGG 2 cut(s) 88, 139
NdeII GATC 1 cut(s) 191
NlaIII CATG 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 78, 172
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 2 cut(s) 77, 171
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 88, 139
SetI ASST 3 cut(s) 52, 175, 241
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 3 cut(s) 6, 152, 268
SsiI CCGC 1 cut(s) 76
SspMI CTAG 2 cut(s) 47, 246
StyD4I CCNGG 2 cut(s) 86, 137
TaqI TCGA 1 cut(s) 196
TasI AATT 3 cut(s) 6, 152, 268
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TscAI CASTG 1 cut(s) 109
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 22, 47
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 6, 152
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 2 cut(s) 47, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.