Rorug01G0401200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018118
Physical Location & Seq
Reverse (-)
50943517 .. 50946976
3460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0401200.1

Sequence Viewer

Length: 2436 bp
ATGTCAATAGATAATGTAACGGTGGTGTGTCAGAATCCTCACAACACCATCAACGTCAAGGGTTTTTGGAGCGGCAAAAACCCCCTGGATTCCTCCACTTCTCTTCTTCTGGTGCAGTTATCTGTAGTTGCATTACTCTCTAACTTCGTCAATCTTTTGCTCCGACAAATAGGACAATCCAGCATCGTTTCTAACATATTTAGTGGTATAGTATTCGGTCCATCACTTCTGGGGAATCTCAAGAAAATCTCGGACATCCTTTTCCCTGTAGAAGGCATCATAGTGCTCGAAACACTTGCAACATGGGGCCTCATATTCTTCCTATTTTCGATGGGAGTGAAGATGGATGCTGGAGGAATTGTGCGTCCCCAACGGAAGTGCTTGGCCATTGGAACATCATTGTTCCTTTGCACATTGATACTCCCTGAGGGACTAACCTACCTCTTGATACGCTATGTCCCCAAATTGGACAGTTCGCTTCGGAACTCACTCCCCTTCTTATCTGCTACGCAAGCTTTGACAAGCTCCCCTGTTATTGGTTCTCTACTTACCGAGCTCAAGATTTTGAACACTGACATTGGCCGCACGGCGGTCTCAACGGCAATATTTTGTGATGCTGTTGGCATAACGATGAGTGCGATTGCTATTGCAATAAGTGATAGGAGGAACAAAAATACAATAATACCATGGCTCGCAGTACTACAAGCAGCGGCTCTTTTGTTGGTCATTCTCCTTGTGGCCAGGCCAATCATGATGTGGATACGAAACCAGGCACAGGAAAGAAAATCTGTCAGGGAGTCGCATATTTTCATCATTTTCGTTTTTGTGCTTGTGTTTGCATTTCTTAGTGAGATCTCAAGCCAGCATTACGTATTGGGGCCGCTAGCGTTTGGCTTTATAATACCTGCCGGACCGCCTTTAGGCTCAGCTGTGGTGGCCAGGGTGGATACTCTTGCTACAGGACTATTCTACCCAACATACCTTGCCGTCACGGGGCTGAAAACAAACATCTACACGATTGATCCTCGGTCTTCGTGGGTTCTCGGGGTTATTTTTCTCTTCGCTAGCGTGGTCAAGATTGGAGCAGTAATGTTGCCAGCCTGCTATTATGAACAGACTATACGTGAAGCTTTTGTGCTCGGGCTTATTCTCAATGCAAAAGGCATCACTGAGCTTATTATGTTCAACATTTGGAAGCAAACCAAGCTGCTGAGCGATCAAGAATATGCCCTGGCTGTGATCTATGTAGTAGCGGTAACAGCTGCTGTGACACCCTTGATAAAACTTCTCTATGATCCCTCAAAGCAATTCTCAGCTACCAAAAGAAGTACAATCCAGCATTTGAAGCGTGAGACAGAGCTCCGAATCATGGCCTGCATCCACTCCCAGGATAACATTCCCACAATGGTAAACGTCCTAGAATTATCAAATGCAACAGAAGAGAACCCTGTTGCAGTCATTGCCCTTATCCTCGTCGAGCTTGTGGGACGAATCACCCCTGTTCTCATAGCACACCACCCCAATGACAATCTAAACACCAGCGTTAACAGCAGCACATCCAACTCCAACAAAATTATCAAAGGCTTGAGTCAGTATGCCGAGTACAATGAACGGCGCGCCAGCCTCCAACCGTTCACTTCCATCTCACATTATCCAACAATGCACGAAGACATTGTAAGGATAGCATTTGAGAAGAAGGCACACATTGTGATCCTGCCGTTTCACAAGCATTATGCAATAGATGGCACCATCGGGTTAGTGAACAGAGCTCACCAGTCCCTGAACATCAATGTAATTGAAAAGGCACCTTGCTCAGTCGGAATCCTCATTGATCGGGGAATCCTAGGCGGTTCGGTATCAGTTCTTAACAGCCAGTTTATATTCCATGTTGCTGTGATCTTCATAGGTGGTGTAGACGATGCAGAGGCACTAGCCTATGGCTCTCGCATGGCAAGTCATCCAAATGTGGACTTAACAGTTGCACGGTTTCTTCTCTTTGGAGAAGAAAATTGTAAAGAAAGGAAGCAGGACAGTGACTTGCTTGAAGAATACAGGCGAGCTAATGCAGGAAATGAGCGGTTTGTTGTGGTGGAAGAAGTGGTAAAAGATGGAGCGAAGCTGTCTTCTGTCATCTGTTCAATGGTAGATTGCTTTGATTTGATGTTGGTGGGGATGCAGCATCAGGACTCCCAGCTTCTTTCGGGGATTGGTAACTGGAGTGAGTGCCCAGAGCTTGGTATCATTGGCGATATGCTTTCTTCGGCGGATTTTCAGTGCTCACTTTCAGTACTAGTCGTGCAACAACAGAGAATATCAGGAAAACCAATTAGTCGGACTGCAAAACCTGTTGATAAAGAACCGCTAATTCATGATGTCCCAGTAGAACAAATGAGAGGATCATGGACAATTACAGTGAATGAAAATGATAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

811

Amino Acids

89.01

Weight (kDa)

7.25

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 44 - 426 4.9e-41 Sodium/hydrogen exchanger, transmembrane
CHX17_2nd PF23256 486 - 619 4.6e-15 Plant cation/H(+) antiporter domain
CHX17_C PF23259 629 - 769 1.3e-15 Plant cation/H(+) antiporter, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018118)

Species Orthologous Gene IDs
prunus_persica Prupe.2G292900_v2.0.a1
pyrus_communis pycom07g24500
rosa_chinensis RchiOBHm_Chr1g0377041
rosa_roxburghii Rroxscaffold_4G00281480
rosa_rugosa Rorug01G0401200 Rorug01G0401200
rosa_samantha Rh1AG418200 Rh1AG418300 Rh1BG377400 Rh1CG391400 Rh1DG408100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 899
Acc36I ACCTGC 1 cut(s) 913
AccB1I GGYRCC 2 cut(s) 1745, 1804
AccB7I CCANNNNNTGG 1 cut(s) 2234
AccBSI CCGCTC 2 cut(s) 72, 2077
AccI GTMKAC 1 cut(s) 1914
AccII CGCG 1 cut(s) 1617
AclWI GGATC 4 cut(s) 1016, 1289, 1705, 2404
AcoI YGGCCR 4 cut(s) 384, 580, 738, 936
AdeI CACNNNGTG 1 cut(s) 1708
AfaI GTAC 4 cut(s) 699, 1330, 1604, 2289
AgsI TTSAA 6 cut(s) 568, 1186, 1345, 1799, 2045, 2139
AhlI ACTAGT 1 cut(s) 2290
AjnI CCWGG 6 cut(s) 84, 740, 768, 938, 1230, 1386
Alw21I GWGCWC 6 cut(s) 288, 558, 1140, 1362, 1771, 2279
Alw26I GTCTC 2 cut(s) 598, 1346
AlwI GGATC 4 cut(s) 1016, 1289, 1705, 2404
AlwNI CAGNNNCTG 2 cut(s) 1265, 1780
Ama87I CYCGRG 2 cut(s) 1043, 1139
AoxI GGCC 8 cut(s) 307, 384, 580, 738, 743, 878, 936, 1371
ApeKI GCWGC 5 cut(s) 707, 1207, 1262, 1551, 2176
AscI GGCGCGCC 1 cut(s) 1615
AspA2I CCTAGG 1 cut(s) 1843
AspLEI GCGC 2 cut(s) 1617, 1619
AspS9I GGNCC 4 cut(s) 218, 307, 878, 911
AsuHPI GGTGA 2 cut(s) 1486, 1763
AsuNHI GCTAGC 2 cut(s) 883, 1064
AvaI CYCGRG 2 cut(s) 1043, 1139
AvaII GGWCC 2 cut(s) 218, 911
AvrII CCTAGG 1 cut(s) 1843
AxyI CCTNAGG 1 cut(s) 426
BaeGI GKGCMC 1 cut(s) 2228
BalI TGGCCA 3 cut(s) 386, 740, 938
BanI GGYRCC 2 cut(s) 1745, 1804
BanII GRGCYC 3 cut(s) 558, 1362, 1771
BbsI GAAGAC 3 cut(s) 1023, 1674, 2115
Bbv12I GWGCWC 6 cut(s) 288, 558, 1140, 1362, 1771, 2279
BbvI GCAGC 5 cut(s) 719, 1194, 1249, 1563, 2188
BccI CCATC 8 cut(s) 56, 229, 325, 337, 1649, 1736, 1757, 2102
BceAI ACGGC 5 cut(s) 603, 615, 971, 1628, 1702
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 6 cut(s) 86, 742, 770, 940, 1232, 1388
BciVI GTATCC 2 cut(s) 753, 940
BcoDI GTCTC 2 cut(s) 598, 1346
BcuI ACTAGT 1 cut(s) 2290
BfaI CTAG 6 cut(s) 884, 1065, 1418, 1844, 1931, 2291
BfmI CTRYAG 3 cut(s) 123, 267, 957
BfuAI ACCTGC 1 cut(s) 913
BfuI GTATCC 2 cut(s) 753, 940
BglII AGATCT 1 cut(s) 852
BisI GCNGC 9 cut(s) 73, 583, 708, 711, 881, 1208, 1263, 1552, 2177
BlnI CCTAGG 1 cut(s) 1843
BlpI GCTNAGC 2 cut(s) 925, 1211
BlsI GCNGC 9 cut(s) 74, 584, 709, 712, 882, 1209, 1264, 1553, 2178
BmcAI AGTACT 2 cut(s) 699, 2289
Bme1390I CCNGG 6 cut(s) 86, 742, 770, 940, 1232, 1388
Bme18I GGWCC 2 cut(s) 218, 911
BmeT110I CYCGRG 2 cut(s) 1043, 1139
BmgT120I GGNCC 4 cut(s) 218, 307, 878, 911
BmiI GGNNCC 4 cut(s) 308, 879, 1747, 1806
BmrFI CCNGG 6 cut(s) 86, 742, 770, 940, 1232, 1388
BmrI ACTGGG 1 cut(s) 2372
BmsI GCATC 9 cut(s) 192, 285, 337, 604, 1173, 1386, 1909, 2163, 2188
BmtI GCTAGC 2 cut(s) 887, 1068
BmuI ACTGGG 1 cut(s) 2372
BpiI GAAGAC 3 cut(s) 1023, 1674, 2115
BpmI CTGGAG 2 cut(s) 372, 2236
Bpu1102I GCTNAGC 2 cut(s) 925, 1211
BpuEI CTTGAG 4 cut(s) 224, 542, 841, 1606
BsaAI YACGTR 2 cut(s) 871, 1124
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 7 cut(s) 84, 686, 939, 1025, 1230, 1386, 1843
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bse1I ACTGG 4 cut(s) 1774, 1873, 2219, 2378
Bse21I CCTNAGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 1458
BseBI CCWGG 6 cut(s) 86, 742, 770, 940, 1232, 1388
BseDI CCNNGG 7 cut(s) 84, 686, 939, 1025, 1230, 1386, 1843
BseGI GGATG 6 cut(s) 255, 352, 1377, 1556, 1957, 2178
BseMI GCAATG 1 cut(s) 1458
BseMII CTCAG 6 cut(s) 417, 939, 1161, 1202, 1326, 1827
BseNI ACTGG 4 cut(s) 1774, 1873, 2219, 2378
BsePI GCGCGC 1 cut(s) 1615
BseSI GKGCMC 1 cut(s) 2228
BseXI GCAGC 5 cut(s) 719, 1194, 1249, 1563, 2188
BseYI CCCAGC 1 cut(s) 2190
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 1617
BshFI GGCC 8 cut(s) 309, 386, 582, 740, 745, 880, 938, 1373
BshNI GGYRCC 2 cut(s) 1745, 1804
BsiHKAI GWGCWC 6 cut(s) 288, 558, 1140, 1362, 1771, 2279
BsiHKCI CYCGRG 2 cut(s) 1043, 1139
BsiSI CCGG 1 cut(s) 909
BslFI GGGAC 6 cut(s) 351, 443, 444, 1500, 1762, 2360
BsmAI GTCTC 2 cut(s) 598, 1346
BsmFI GGGAC 6 cut(s) 351, 443, 444, 1500, 1762, 2360
BsnI GGCC 8 cut(s) 309, 386, 582, 740, 745, 880, 938, 1373
Bso31I GGTCTC 1 cut(s) 598
BsoBI CYCGRG 2 cut(s) 1043, 1139
Bsp1286I GDGCHC 7 cut(s) 288, 558, 1140, 1362, 1771, 2228, 2279
Bsp143I GATC 9 cut(s) 852, 1021, 1216, 1239, 1294, 1710, 1831, 1896, 2396
Bsp1720I GCTNAGC 2 cut(s) 925, 1211
Bsp19I CCATGG 1 cut(s) 686
BspANI GGCC 8 cut(s) 309, 386, 582, 740, 745, 880, 938, 1373
BspCNI CTCAG 6 cut(s) 418, 938, 1162, 1203, 1325, 1826
BspFNI CGCG 1 cut(s) 1617
BspHI TCATGA 2 cut(s) 750, 2368
BspLI GGNNCC 4 cut(s) 308, 879, 1747, 1806
BspMI ACCTGC 1 cut(s) 913
BspOI GCTAGC 2 cut(s) 887, 1068
BspPI GGATC 4 cut(s) 1016, 1289, 1705, 2404
BspT107I GGYRCC 2 cut(s) 1745, 1804
BspTNI GGTCTC 1 cut(s) 598
BsrBI CCGCTC 2 cut(s) 72, 2077
BsrDI GCAATG 1 cut(s) 1458
BsrI ACTGG 4 cut(s) 1774, 1873, 2219, 2378
BssECI CCNNGG 7 cut(s) 84, 686, 939, 1025, 1230, 1386, 1843
BssHII GCGCGC 1 cut(s) 1615
BssMI GATC 9 cut(s) 852, 1021, 1216, 1239, 1294, 1710, 1831, 1896, 2396
BssT1I CCWWGG 2 cut(s) 686, 1843
Bst2UI CCWGG 6 cut(s) 86, 742, 770, 940, 1232, 1388
Bst4CI ACNGT 7 cut(s) 22, 473, 1632, 1978, 1986, 2033, 2413
Bst6I CTCTTC 3 cut(s) 108, 1064, 1434
BstAPI GCANNNNNTGC 1 cut(s) 1460
BstBAI YACGTR 2 cut(s) 871, 1124
BstDEI CTNAG 7 cut(s) 426, 845, 925, 1170, 1211, 1312, 1813
BstDSI CCRYGG 1 cut(s) 686
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 6 cut(s) 255, 352, 1377, 1556, 1957, 2178
BstFNI CGCG 1 cut(s) 1617
BstHHI GCGC 2 cut(s) 1617, 1619
BstKTI GATC 9 cut(s) 855, 1024, 1219, 1242, 1297, 1713, 1834, 1899, 2399
BstMAI GTCTC 2 cut(s) 598, 1346
BstMBI GATC 9 cut(s) 852, 1021, 1216, 1239, 1294, 1710, 1831, 1896, 2396
BstMWI GCNNNNNNNGC 7 cut(s) 512, 935, 1204, 1259, 1345, 1460, 1548
BstNI CCWGG 6 cut(s) 86, 742, 770, 940, 1232, 1388
BstSCI CCNGG 6 cut(s) 84, 740, 768, 938, 1230, 1386
BstSFI CTRYAG 3 cut(s) 123, 267, 957
BstSLI GKGCMC 1 cut(s) 2228
BstSNI TACGTA 1 cut(s) 871
BstUI CGCG 1 cut(s) 1617
BstV1I GCAGC 5 cut(s) 719, 1194, 1249, 1563, 2188
BstV2I GAAGAC 3 cut(s) 1023, 1674, 2115
BstX2I RGATCY 1 cut(s) 852
BstYI RGATCY 1 cut(s) 852
Bsu36I CCTNAGG 1 cut(s) 426
BsuI GTATCC 2 cut(s) 753, 940
BsuRI GGCC 8 cut(s) 309, 386, 582, 740, 745, 880, 938, 1373
BtgI CCRYGG 1 cut(s) 686
BtsCI GGATG 6 cut(s) 255, 352, 1377, 1556, 1957, 2178
BtsIMutI CAGTG 5 cut(s) 570, 1167, 2038, 2279, 2418
BveI ACCTGC 1 cut(s) 913
CaiI CAGNNNCTG 2 cut(s) 1265, 1780
CciI TCATGA 2 cut(s) 750, 2368
CfoI GCGC 2 cut(s) 1617, 1619
Cfr13I GGNCC 4 cut(s) 218, 307, 878, 911
CpoI CGGWCCG 1 cut(s) 911
CseI GACGC 1 cut(s) 353
Csp6I GTAC 4 cut(s) 698, 1329, 1603, 2288
CspI CGGWCCG 1 cut(s) 911
CviAII CATG 8 cut(s) 303, 687, 751, 1369, 1886, 1948, 2369, 2400
CviQI GTAC 4 cut(s) 698, 1329, 1603, 2288
DdeI CTNAG 7 cut(s) 426, 845, 925, 1170, 1211, 1312, 1813
DpnI GATC 9 cut(s) 854, 1023, 1218, 1241, 1296, 1712, 1833, 1898, 2398
DpnII GATC 9 cut(s) 852, 1021, 1216, 1239, 1294, 1710, 1831, 1896, 2396
DraIII CACNNNGTG 1 cut(s) 1708
EaeI YGGCCR 4 cut(s) 384, 580, 738, 936
Eam1104I CTCTTC 3 cut(s) 108, 1064, 1434
EarI CTCTTC 3 cut(s) 108, 1064, 1434
EciI GGCGGA 1 cut(s) 2279
Ecl136II GAGCTC 3 cut(s) 556, 1360, 1769
Eco105I TACGTA 1 cut(s) 871
Eco130I CCWWGG 2 cut(s) 686, 1843
Eco24I GRGCYC 3 cut(s) 558, 1362, 1771
Eco31I GGTCTC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 218, 911
Eco53kI GAGCTC 3 cut(s) 556, 1360, 1769
Eco81I CCTNAGG 1 cut(s) 426
Eco88I CYCGRG 2 cut(s) 1043, 1139
EcoICRI GAGCTC 3 cut(s) 556, 1360, 1769
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 6 cut(s) 84, 740, 768, 938, 1230, 1386
EcoT14I CCWWGG 2 cut(s) 686, 1843
EcoT38I GRGCYC 3 cut(s) 558, 1362, 1771
ErhI CCWWGG 2 cut(s) 686, 1843
FaeI CATG 8 cut(s) 306, 690, 754, 1372, 1889, 1951, 2372, 2403
FaqI GGGAC 6 cut(s) 351, 443, 444, 1500, 1762, 2360
FatI CATG 8 cut(s) 302, 686, 750, 1368, 1885, 1947, 2368, 2399
FblI GTMKAC 1 cut(s) 1914
Fnu4HI GCNGC 9 cut(s) 73, 583, 708, 711, 881, 1208, 1263, 1552, 2177
FokI GGATG 6 cut(s) 242, 359, 1364, 1543, 1944, 2185
FriOI GRGCYC 3 cut(s) 558, 1362, 1771
Fsp4HI GCNGC 9 cut(s) 73, 583, 708, 711, 881, 1208, 1263, 1552, 2177
FspBI CTAG 6 cut(s) 884, 1065, 1418, 1844, 1931, 2291
GlaI GCGC 2 cut(s) 1616, 1618
GluI GCNGC 9 cut(s) 73, 583, 708, 711, 881, 1208, 1263, 1552, 2177
GsaI CCCAGC 1 cut(s) 2194
GsuI CTGGAG 2 cut(s) 372, 2236
HaeIII GGCC 8 cut(s) 309, 386, 582, 740, 745, 880, 938, 1373
HapII CCGG 1 cut(s) 909
HgaI GACGC 1 cut(s) 353
HhaI GCGC 2 cut(s) 1617, 1619
Hin1II CATG 8 cut(s) 306, 690, 754, 1372, 1889, 1951, 2372, 2403
Hin6I GCGC 2 cut(s) 1615, 1617
HinP1I GCGC 2 cut(s) 1615, 1617
HincII GTYRAC 1 cut(s) 1546
HindII GTYRAC 1 cut(s) 1546
HindIII AAGCTT 2 cut(s) 513, 1128
HpaI GTTAAC 1 cut(s) 1546
HpaII CCGG 1 cut(s) 909
HphI GGTGA 2 cut(s) 1486, 1763
Hpy166II GTNNAC 6 cut(s) 1411, 1546, 1635, 1762, 1915, 1969
Hpy188I TCNGA 7 cut(s) 33, 164, 253, 483, 1364, 1820, 2334
Hpy188III TCNNGA 9 cut(s) 241, 445, 559, 751, 1075, 1220, 2183, 2316, 2369
Hpy8I GTNNAC 6 cut(s) 1411, 1546, 1635, 1762, 1915, 1969
Hpy99I CGWCG 1 cut(s) 1478
HpyAV CCTTC 3 cut(s) 266, 505, 1690
HpyCH4III ACNGT 7 cut(s) 22, 473, 1632, 1978, 1986, 2033, 2413
HpyCH4IV ACGT 4 cut(s) 54, 870, 1123, 1413
HpyF10VI GCNNNNNNNGC 7 cut(s) 512, 935, 1204, 1259, 1345, 1460, 1548
HpyF3I CTNAG 7 cut(s) 426, 845, 925, 1170, 1211, 1312, 1813
HpySE526I ACGT 4 cut(s) 54, 870, 1123, 1413
Hsp92II CATG 8 cut(s) 306, 690, 754, 1372, 1889, 1951, 2372, 2403
HspAI GCGC 2 cut(s) 1615, 1617
KspAI GTTAAC 1 cut(s) 1546
Kzo9I GATC 9 cut(s) 852, 1021, 1216, 1239, 1294, 1710, 1831, 1896, 2396
LmnI GCTCC 6 cut(s) 69, 165, 530, 1082, 1365, 2111
Lsp1109I GCAGC 5 cut(s) 719, 1194, 1249, 1563, 2188
LweI GCATC 9 cut(s) 192, 285, 337, 604, 1173, 1386, 1909, 2163, 2188
MaeI CTAG 6 cut(s) 884, 1065, 1418, 1844, 1931, 2291
MaeII ACGT 4 cut(s) 54, 870, 1123, 1413
MaeIII GTNAC 6 cut(s) 16, 988, 1255, 1267, 2033, 2210
MalI GATC 9 cut(s) 854, 1023, 1218, 1241, 1296, 1712, 1833, 1898, 2398
MbiI CCGCTC 2 cut(s) 72, 2077
MboI GATC 9 cut(s) 852, 1021, 1216, 1239, 1294, 1710, 1831, 1896, 2396
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 7 cut(s) 288, 558, 1140, 1362, 1771, 2228, 2279
MlsI TGGCCA 3 cut(s) 386, 740, 938
MluNI TGGCCA 3 cut(s) 386, 740, 938
MlyI GAGTC 3 cut(s) 806, 1597, 2180
MmeI TCCRAC 7 cut(s) 187, 1584, 1590, 1651, 1679, 1798, 2312
Mox20I TGGCCA 3 cut(s) 386, 740, 938
MscI TGGCCA 3 cut(s) 386, 740, 938
MseI TTAA 3 cut(s) 1545, 1866, 1973
MslI CAYNNNNRTG 4 cut(s) 281, 629, 1521, 1962
Msp20I TGGCCA 3 cut(s) 386, 740, 938
MspA1I CMGCKG 3 cut(s) 710, 929, 1262
MspI CCGG 1 cut(s) 909
MspR9I CCNGG 6 cut(s) 86, 742, 770, 940, 1232, 1388
MvaI CCWGG 6 cut(s) 86, 742, 770, 940, 1232, 1388
MvnI CGCG 1 cut(s) 1617
MwoI GCNNNNNNNGC 7 cut(s) 512, 935, 1204, 1259, 1345, 1460, 1548
NcoI CCATGG 1 cut(s) 686
NdeII GATC 9 cut(s) 852, 1021, 1216, 1239, 1294, 1710, 1831, 1896, 2396
NheI GCTAGC 2 cut(s) 883, 1064
NlaIII CATG 8 cut(s) 306, 690, 754, 1372, 1889, 1951, 2372, 2403
NlaIV GGNNCC 4 cut(s) 308, 879, 1747, 1806
NmeAIII GCCGAG 1 cut(s) 1624
NmuCI GTSAC 3 cut(s) 988, 1267, 2033
PagI TCATGA 2 cut(s) 750, 2368
PalAI GGCGCGCC 1 cut(s) 1615
PauI GCGCGC 1 cut(s) 1615
PcsI WCGNNNNNNNCGW 1 cut(s) 635
PfeI GAWTC 7 cut(s) 34, 89, 235, 1365, 1491, 1821, 1839
PflMI CCANNNNNTGG 1 cut(s) 2234
PkrI GCNGC 9 cut(s) 74, 584, 709, 712, 882, 1209, 1264, 1553, 2178
PleI GAGTC 3 cut(s) 805, 1596, 2180
PpsI GAGTC 3 cut(s) 805, 1596, 2180
Ppu21I YACGTR 2 cut(s) 871, 1124
PsiI TTATAA 1 cut(s) 899
Psp124BI GAGCTC 3 cut(s) 558, 1362, 1771
Psp6I CCWGG 6 cut(s) 84, 740, 768, 938, 1230, 1386
PspFI CCCAGC 1 cut(s) 2190
PspGI CCWGG 6 cut(s) 84, 740, 768, 938, 1230, 1386
PspN4I GGNNCC 4 cut(s) 308, 879, 1747, 1806
PspPI GGNCC 4 cut(s) 218, 307, 878, 911
PsrI GAACNNNNNNTAC 2 cut(s) 1104, 1136
PstNI CAGNNNCTG 2 cut(s) 1265, 1780
PsuI RGATCY 1 cut(s) 852
PteI GCGCGC 1 cut(s) 1615
PvuII CAGCTG 2 cut(s) 929, 1262
RsaI GTAC 4 cut(s) 699, 1330, 1604, 2289
RsaNI GTAC 4 cut(s) 698, 1329, 1603, 2288
RseI CAYNNNNRTG 4 cut(s) 281, 629, 1521, 1962
Rsr2I CGGWCCG 1 cut(s) 911
RsrII CGGWCCG 1 cut(s) 911
SacI GAGCTC 3 cut(s) 558, 1362, 1771
SaqAI TTAA 3 cut(s) 1545, 1866, 1973
SatI GCNGC 9 cut(s) 73, 583, 708, 711, 881, 1208, 1263, 1552, 2177
Sau3AI GATC 9 cut(s) 852, 1021, 1216, 1239, 1294, 1710, 1831, 1896, 2396
Sau96I GGNCC 4 cut(s) 218, 307, 878, 911
ScaI AGTACT 2 cut(s) 699, 2289
SchI GAGTC 3 cut(s) 806, 1597, 2180
ScrFI CCNGG 6 cut(s) 86, 742, 770, 940, 1232, 1388
SduI GDGCHC 7 cut(s) 288, 558, 1140, 1362, 1771, 2228, 2279
SfaNI GCATC 9 cut(s) 192, 285, 337, 604, 1173, 1386, 1909, 2163, 2188
SfcI CTRYAG 3 cut(s) 123, 267, 957
SgsI GGCGCGCC 1 cut(s) 1615
SinI GGWCC 2 cut(s) 218, 911
SmiMI CAYNNNNRTG 4 cut(s) 281, 629, 1521, 1962
SmlI CTYRAG 4 cut(s) 239, 557, 856, 1585
SmoI CTYRAG 4 cut(s) 239, 557, 856, 1585
SnaBI TACGTA 1 cut(s) 871
SpeI ACTAGT 1 cut(s) 2290
SspI AATATT 1 cut(s) 606
SspMI CTAG 6 cut(s) 884, 1065, 1418, 1844, 1931, 2291
SstI GAGCTC 3 cut(s) 558, 1362, 1771
StyD4I CCNGG 6 cut(s) 84, 740, 768, 938, 1230, 1386
StyI CCWWGG 2 cut(s) 686, 1843
TaaI ACNGT 7 cut(s) 22, 473, 1632, 1978, 1986, 2033, 2413
TaiI ACGT 4 cut(s) 57, 873, 1126, 1416
TaqI TCGA 3 cut(s) 288, 329, 1476
TaqII GACCGA 2 cut(s) 206, 1017
TatI WGTACW 4 cut(s) 697, 1328, 1602, 2287
TauI GCSGC 4 cut(s) 75, 585, 713, 883
TfiI GAWTC 7 cut(s) 34, 89, 235, 1365, 1491, 1821, 1839
Tru1I TTAA 3 cut(s) 1545, 1866, 1973
Tru9I TTAA 3 cut(s) 1545, 1866, 1973
TscAI CASTG 5 cut(s) 577, 1174, 2038, 2279, 2418
TseFI GTSAC 3 cut(s) 988, 1267, 2033
TseI GCWGC 5 cut(s) 707, 1207, 1262, 1551, 2176
Tsp45I GTSAC 3 cut(s) 988, 1267, 2033
TspDTI ATGAA 6 cut(s) 799, 1125, 1623, 1891, 2357, 2433
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 5 cut(s) 577, 1174, 2038, 2279, 2418
Van91I CCANNNNNTGG 1 cut(s) 2234
VpaK11BI GGWCC 2 cut(s) 218, 911
XagI CCTNNNNNAGG 1 cut(s) 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XmaJI CCTAGG 1 cut(s) 1843
XmiI GTMKAC 1 cut(s) 1914
XspI CTAG 6 cut(s) 884, 1065, 1418, 1844, 1931, 2291
ZrmI AGTACT 2 cut(s) 699, 2289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.