pycom07g27060

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0019142
Physical Location & Seq
Forward (+)
26883829 .. 26885491
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGCTCTGCGTATACCATAGGTCCATATCAGTAAGAATGATCAAGGTCGGAGCAAACGGTTACAGTGGCAAACAATTTGGTGATACAACCAAAACCAAGATCTTTGTCGGAGGATTGCCGTGGGAGACTCGAGTCGACACCATGAGACGCTATTTCGAGCAGTTCGGGGAGATCCTGGAGGCCGTTGTCATCACTGACAAGTTCACAGCAAGATCAAAAGGCTATGGTTTTGTGACGTTCAAGGATCCAGAATCAGCTGTGAGAGCTTGTGAAAACCCTAATCCTATCATCGATGGAAGGCGAGCTAATTGTAATCTTGCAGTCCTCGGTGCACAGAAGAATCGTCCAACCACTCCTCAGCCTCAACATGAAGTTGTTGAGGGAATGAAGAAAACCAGATCATCATCCATACCTTTCATCAACACCTATTTCCATCACTCCAACCCCCAATATGCATTAATCCCTTATTCGACTTACGGGCATCCAATTTACCAGCAAGACAATAACTTTACATTAATGAATTATAATTACACCGGATATGGTGGCTGGGGGCAACAGCAACACTATTATCCTTATCCTGGGGTGTACTATTATCCGTGTGTTCCAGTACAAGCACAACCTGGACATAATAGTCCAACAACATCCAATCCCAGACCCAAACTACAGAGCTTACCACTTGCACTTCCTACTACTACAGTCACAGGTACTTACTCCAACTTTGGTCTCTACTCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006974 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010830 GO:0010831 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0035925 GO:0036002 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0048024 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097157 GO:0097159 GO:1901363 GO:1901861 GO:1901863 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1903311 GO:1903312 GO:1903313 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

246

Amino Acids

27.67

Weight (kDa)

9.31

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 34 - 92 3.4e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11412 AT5G53680 AT5G53720
malus_domestica MD07G1298100.v1.1
prunus_persica Prupe.2G197200_v2.0.a1 Prupe.2G318000_v2.0.a1 Prupe.2G318000_v2.0.a1
pyrus_communis pycom07g27060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AasI GACNNNNNNGTC 1 cut(s) 630
AccI GTMKAC 2 cut(s) 12, 135
AclWI GGATC 3 cut(s) 166, 239, 252
AfaI GTAC 3 cut(s) 587, 609, 706
AfiI CCNNNNNNNGG 1 cut(s) 578
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 3 cut(s) 174, 577, 619
AluBI AGCT 4 cut(s) 257, 266, 305, 669
AluI AGCT 4 cut(s) 257, 266, 305, 669
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 3 cut(s) 119, 139, 728
Alw44I GTGCAC 1 cut(s) 330
AlwI GGATC 3 cut(s) 166, 239, 252
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 1 cut(s) 180
ApaLI GTGCAC 1 cut(s) 330
AseI ATTAAT 2 cut(s) 458, 515
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 334
BamHI GGATCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 334
BbvCI CCTCAGC 1 cut(s) 357
BccI CCATC 2 cut(s) 287, 441
BceAI ACGGC 2 cut(s) 103, 167
BciT130I CCWGG 3 cut(s) 176, 579, 621
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 3 cut(s) 119, 139, 728
BfaI CTAG 1 cut(s) 736
BfmI CTRYAG 2 cut(s) 662, 693
BglII AGATCT 1 cut(s) 99
Bme1390I CCNGG 3 cut(s) 176, 579, 621
Bme18I GGWCC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 3 cut(s) 176, 579, 621
BmsI GCATC 1 cut(s) 490
BoxI GACNNNNGTC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 357
Bsa29I ATCGAT 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 403
BsaI GGTCTC 1 cut(s) 728
BsaJI CCNNGG 3 cut(s) 119, 325, 578
BsaWI WCCGGW 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse1I ACTGG 1 cut(s) 605
Bse8I GATNNNNATC 1 cut(s) 403
BseBI CCWGG 3 cut(s) 176, 579, 621
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 119, 325, 578
BseGI GGATG 3 cut(s) 404, 481, 641
BseJI GATNNNNATC 1 cut(s) 403
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 334
BseYI CCCAGC 1 cut(s) 546
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 534
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 3 cut(s) 119, 139, 728
BsmBI CGTCTC 1 cut(s) 139
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 728
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 6 cut(s) 39, 99, 171, 212, 244, 398
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 370
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 3 cut(s) 166, 239, 252
BspTNI GGTCTC 1 cut(s) 728
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 119, 325, 578
BssMI GATC 6 cut(s) 39, 99, 171, 212, 244, 398
BssNAI GTATAC 1 cut(s) 13
Bst1107I GTATAC 1 cut(s) 13
Bst2UI CCWGG 3 cut(s) 176, 579, 621
Bst4CI ACNGT 3 cut(s) 59, 65, 697
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 3 cut(s) 404, 481, 641
BstKTI GATC 6 cut(s) 42, 102, 174, 215, 247, 401
BstMAI GTCTC 3 cut(s) 119, 139, 728
BstMBI GATC 6 cut(s) 39, 99, 171, 212, 244, 398
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 3 cut(s) 176, 579, 621
BstPAI GACNNNNGTC 1 cut(s) 131
BstSCI CCNGG 3 cut(s) 174, 577, 619
BstSFI CTRYAG 2 cut(s) 662, 693
BstSLI GKGCMC 1 cut(s) 334
BstX2I RGATCY 3 cut(s) 99, 171, 244
BstYI RGATCY 3 cut(s) 99, 171, 244
BstZ17I GTATAC 1 cut(s) 13
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 3 cut(s) 404, 481, 641
BtsIMutI CAGTG 2 cut(s) 70, 192
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 21
ClaI ATCGAT 1 cut(s) 291
CseI GACGC 1 cut(s) 156
Csp6I GTAC 3 cut(s) 586, 608, 705
CviAII CATG 2 cut(s) 142, 368
CviJI RGCY 8 cut(s) 182, 222, 257, 266, 305, 361, 546, 669
CviKI_1 RGCY 8 cut(s) 182, 222, 257, 266, 305, 361, 546, 669
CviQI GTAC 3 cut(s) 586, 608, 705
DdeI CTNAG 1 cut(s) 357
DpnI GATC 6 cut(s) 41, 101, 173, 214, 246, 400
DpnII GATC 6 cut(s) 39, 99, 171, 212, 244, 398
DrdI GACNNNNNNGTC 1 cut(s) 630
DseDI GACNNNNNNGTC 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 728
Eco47I GGWCC 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 3 cut(s) 174, 577, 619
EcoT22I ATGCAT 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 2 cut(s) 145, 371
FatI CATG 2 cut(s) 141, 367
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 2 cut(s) 12, 135
FokI GGATG 3 cut(s) 391, 468, 628
FspBI CTAG 1 cut(s) 736
GsaI CCCAGC 1 cut(s) 550
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 534
HgaI GACGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 145, 371
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 127, 132, 251, 340
HpaII CCGG 1 cut(s) 534
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 5 cut(s) 13, 136, 204, 332, 586
Hpy188I TCNGA 2 cut(s) 50, 110
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 5 cut(s) 13, 136, 204, 332, 586
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 3 cut(s) 59, 65, 697
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 320, 332, 455, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 2 cut(s) 145, 371
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 6 cut(s) 39, 99, 171, 212, 244, 398
LmnI GCTCC 1 cut(s) 50
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 736
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 3 cut(s) 59, 232, 697
MalI GATC 6 cut(s) 41, 101, 173, 214, 246, 400
MboI GATC 6 cut(s) 39, 99, 171, 212, 244, 398
MboII GAAGA 2 cut(s) 349, 400
MflI RGATCY 3 cut(s) 99, 171, 244
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 5 cut(s) 74, 307, 486, 520, 526
MlyI GAGTC 2 cut(s) 121, 141
MmeI TCCRAC 6 cut(s) 28, 88, 371, 465, 659, 738
MnlI CCTC 6 cut(s) 104, 172, 335, 366, 372, 373
Mph1103I ATGCAT 1 cut(s) 457
MseI TTAA 2 cut(s) 458, 515
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 534
MspR9I CCNGG 3 cut(s) 176, 579, 621
MvaI CCWGG 3 cut(s) 176, 579, 621
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 6 cut(s) 39, 99, 171, 212, 244, 398
NlaIII CATG 2 cut(s) 145, 371
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 232, 697
NsiI ATGCAT 1 cut(s) 457
PaeR7I CTCGAG 1 cut(s) 129
PfeI GAWTC 2 cut(s) 251, 340
PfoI TCCNGGA 1 cut(s) 174
PleI GAGTC 2 cut(s) 121, 140
PpsI GAGTC 2 cut(s) 121, 140
PshAI GACNNNNGTC 1 cut(s) 131
PshBI ATTAAT 2 cut(s) 458, 515
PsiI TTATAA 1 cut(s) 525
Psp6I CCWGG 3 cut(s) 174, 577, 619
PspFI CCCAGC 1 cut(s) 546
PspGI CCWGG 3 cut(s) 174, 577, 619
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 21
PspXI VCTCGAGB 1 cut(s) 129
PsuI RGATCY 3 cut(s) 99, 171, 244
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 3 cut(s) 587, 609, 706
RsaNI GTAC 3 cut(s) 586, 608, 705
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 458, 515
Sau3AI GATC 6 cut(s) 39, 99, 171, 212, 244, 398
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 2 cut(s) 121, 141
ScrFI CCNGG 3 cut(s) 176, 579, 621
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 2 cut(s) 662, 693
Sfr274I CTCGAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 5 cut(s) 74, 307, 486, 520, 526
SspMI CTAG 1 cut(s) 736
StyD4I CCNGG 3 cut(s) 174, 577, 619
TaaI ACNGT 3 cut(s) 59, 65, 697
TaiI ACGT 1 cut(s) 239
TaqI TCGA 5 cut(s) 130, 135, 156, 291, 470
TasI AATT 5 cut(s) 74, 307, 486, 520, 526
TatI WGTACW 2 cut(s) 585, 607
TfiI GAWTC 2 cut(s) 251, 340
Tru1I TTAA 2 cut(s) 458, 515
Tru9I TTAA 2 cut(s) 458, 515
TscAI CASTG 2 cut(s) 70, 199
TseFI GTSAC 2 cut(s) 232, 697
Tsp45I GTSAC 2 cut(s) 232, 697
TspDTI ATGAA 4 cut(s) 384, 401, 406, 533
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 2 cut(s) 70, 199
VneI GTGCAC 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 21
VspI ATTAAT 2 cut(s) 458, 515
XhoI CTCGAG 1 cut(s) 129
XmiI GTMKAC 2 cut(s) 12, 135
XspI CTAG 1 cut(s) 736
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.