Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016530

Physical Location & Seq

Genomic Coordinates Forward (+)

27596222 .. 27598001

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAGTTTCCAAGATCTTGAGGCTGGTTCTTCTCCCCAACAGCAACAGCAACAGCAACAACAACAACAGCAGCAGCAACAACGACGACCTTTTGTTTACTCGAATGCAATTCAGAACCAGCAGCAGCAGCAAAATCGAAATCAATATCTTTACGAGCCGTCTCAGGCCCTGTCTGCCGGGATTTTCCAGATCAACACCGCCGTATCCACTTATTACCGCCTCGTCAATTCCCTCGGCACCCCAAAAGACACCCTTCAACTCCGCGACAAGCTGCATAAGACCAGGGCGCACATTGGGCAGTTGGTGAAAGATACTTCAGACAAACTCAAGCAAGCTAGTGAAACTGATCACCATGCCCAAGTTACTGTTGTCAAAAAGATTGCGGATGCTAAGCTTGCAAAGGATTTCCAGGCGGTTCTCAAAGAATTTCAGAAGGCTCAGAGGCTTGCAGCTGAAAGGGAAACAACATATGCTCCCTTTGTTCCCAAAGATGTTCTTCCATCCAGTCATCCTGCCCATGAGCAGGAGATGAGTTCATCTAGGAGTCCCAAACAGCAAGCTCTTCTTCTAGAATCAAAAAGACAAGAGGTTGTACTTGCGGACAATGAGATTGCATTCAATGAAGCCATTATTGAAGAAAGGGAGCAAGGGATCCAAGAAATTCAACAACAGATCAGTGAGGTTAATGAGATTTTCAAAGATCTAGCTGTACTGGTCGATCGATCAAGGAGCTATAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

248

Amino Acids

28.34

Weight (kDa)

7.04

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	54 - 182	1.2e-34	Syntaxin-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16830
fragaria_vesca	FvH4_7g34071
malus_domestica	MD01G1237000.v1.1 MD07G1309600.v1.1
prunus_persica	Prupe.2G327300_v2.0.a1
pyrus_communis	pycom01g24480 pycom07g28160
rosa_chinensis	RchiOBHm_Chr1g0384351
rosa_laevigata	RLG00000026046
rosa_multiflora	Rmu_sc0016737.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276750
rosa_rugosa	Rorug01G0447000
rosa_samantha	Rh1CG443100
rosa_wichuraiana	Rw1G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	1 cut(s)	264
AciI	CCGC	6 cut(s)	198, 217, 262, 383, 413, 599
AclWI	GGATC	2 cut(s)	646, 659
AcsI	RAATTY	2 cut(s)	425, 660
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	2 cut(s)	594, 711
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	5 cut(s)	257, 619, 635, 665, 697
AjnI	CCWGG	2 cut(s)	281, 408
AluBI	AGCT	7 cut(s)	271, 335, 394, 452, 560, 707, 732
AluI	AGCT	7 cut(s)	271, 335, 394, 452, 560, 707, 732
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	2 cut(s)	646, 659
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	7 cut(s)	70, 73, 121, 124, 127, 271, 449
ApoI	RAATTY	2 cut(s)	425, 660
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	316, 341
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
BamHI	GGATCC	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	236
BbvI	GCAGC	7 cut(s)	82, 85, 133, 136, 139, 258, 461
BccI	CCATC	1 cut(s)	508
BceAI	ACGGC	2 cut(s)	142, 185
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	2 cut(s)	283, 410
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	4 cut(s)	336, 540, 569, 704
BfuI	GTATCC	1 cut(s)	214
BglII	AGATCT	2 cut(s)	13, 700
BisI	GCNGC	7 cut(s)	71, 74, 122, 125, 128, 272, 450
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	7 cut(s)	72, 75, 123, 126, 129, 273, 451
Bme1390I	CCNGG	3 cut(s)	178, 283, 410
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	238, 653
BmrFI	CCNGG	3 cut(s)	178, 283, 410
BmsI	GCATC	1 cut(s)	376
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	38, 311
BpuMI	CCSGG	1 cut(s)	178
Bsa29I	ATCGAT	2 cut(s)	721, 739
BsaJI	CCNNGG	2 cut(s)	232, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	2 cut(s)	504, 717
BseBI	CCWGG	2 cut(s)	283, 410
BseCI	ATCGAT	2 cut(s)	721, 739
BseDI	CCNNGG	2 cut(s)	232, 282
BseGI	GGATG	3 cut(s)	391, 500, 508
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	176, 452
BseNI	ACTGG	2 cut(s)	504, 717
BseXI	GCAGC	7 cut(s)	82, 85, 133, 136, 139, 258, 461
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	721
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	236
BshVI	ATCGAT	2 cut(s)	721, 739
BsiEI	CGRYCG	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	2 cut(s)	109, 614
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	8 cut(s)	13, 189, 346, 651, 672, 700, 718, 722
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	6 cut(s)	198, 217, 262, 383, 413, 599
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	2 cut(s)	175, 451
BspDI	ATCGAT	2 cut(s)	721, 739
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	238, 653
BspPI	GGATC	2 cut(s)	646, 659
BspQI	GCTCTTC	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	504, 717
BssECI	CCNNGG	2 cut(s)	232, 282
BssMI	GATC	8 cut(s)	13, 189, 346, 651, 672, 700, 718, 722
Bst2UI	CCWGG	2 cut(s)	283, 410
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	4 cut(s)	333, 396, 447, 558
BstDEI	CTNAG	3 cut(s)	162, 390, 438
BstF5I	GGATG	3 cut(s)	391, 500, 508
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	8 cut(s)	16, 192, 349, 654, 675, 703, 721, 725
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	8 cut(s)	13, 189, 346, 651, 672, 700, 718, 722
BstMCI	CGRYCG	1 cut(s)	721
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 173, 295, 395
BstNI	CCWGG	2 cut(s)	283, 410
BstSCI	CCNGG	3 cut(s)	176, 281, 408
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	7 cut(s)	82, 85, 133, 136, 139, 258, 461
BstX2I	RGATCY	3 cut(s)	13, 651, 700
BstYI	RGATCY	3 cut(s)	13, 651, 700
Bsu15I	ATCGAT	2 cut(s)	721, 739
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	167
BsuTUI	ATCGAT	2 cut(s)	721, 739
BtsCI	GGATG	3 cut(s)	391, 500, 508
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	4 cut(s)	333, 396, 447, 558
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	166
ClaI	ATCGAT	2 cut(s)	721, 739
Csp6I	GTAC	2 cut(s)	593, 710
CviAII	CATG	2 cut(s)	353, 518
CviQI	GTAC	2 cut(s)	593, 710
DdeI	CTNAG	3 cut(s)	162, 390, 438
DpnI	GATC	8 cut(s)	15, 191, 348, 653, 674, 702, 720, 724
DpnII	GATC	8 cut(s)	13, 189, 346, 651, 672, 700, 718, 722
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	281, 408
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	2 cut(s)	356, 521
FaiI	YATR	6 cut(s)	276, 354, 469, 471, 519, 735
FalI	AAGNNNNNCTT	6 cut(s)	237, 269, 480, 512, 549, 581
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	2 cut(s)	352, 517
FauNDI	CATATG	1 cut(s)	469
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	7 cut(s)	71, 74, 122, 125, 128, 272, 450
FokI	GGATG	3 cut(s)	398, 487, 495
Fsp4HI	GCNGC	7 cut(s)	71, 74, 122, 125, 128, 272, 450
FspBI	CTAG	4 cut(s)	336, 540, 569, 704
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	7 cut(s)	71, 74, 122, 125, 128, 272, 450
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	2 cut(s)	356, 521
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	2 cut(s)	544, 572
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	316, 341
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	114, 319, 432, 441
Hpy188III	TCNNGA	3 cut(s)	17, 187, 569
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	263, 427
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	5 cut(s)	107, 274, 398, 449, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 173, 295, 395
HpyF3I	CTNAG	3 cut(s)	162, 390, 438
Hsp92II	CATG	2 cut(s)	356, 521
HspAI	GCGC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	8 cut(s)	13, 189, 346, 651, 672, 700, 718, 722
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	3 cut(s)	478, 643, 729
Lsp1109I	GCAGC	7 cut(s)	82, 85, 133, 136, 139, 258, 461
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	4 cut(s)	336, 540, 569, 704
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	8 cut(s)	15, 191, 348, 653, 674, 702, 720, 724
MboI	GATC	8 cut(s)	13, 189, 346, 651, 672, 700, 718, 722
MboII	GAAGA	5 cut(s)	21, 488, 554, 557, 647
MflI	RGATCY	3 cut(s)	13, 651, 700
MluCI	AATT	4 cut(s)	108, 226, 425, 660
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	13, 230, 242, 435, 580, 673
MseI	TTAA	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	178, 283, 410
Mva1269I	GAATGC	2 cut(s)	109, 614
MvaI	CCWGG	2 cut(s)	283, 410
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	127, 173, 295, 395
NciI	CCSGG	1 cut(s)	178
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	8 cut(s)	13, 189, 346, 651, 672, 700, 718, 722
NlaIII	CATG	2 cut(s)	356, 521
NlaIV	GGNNCC	2 cut(s)	238, 653
NmeAIII	GCCGAG	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	567
PctI	GAATGC	2 cut(s)	109, 614
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	7 cut(s)	72, 75, 123, 126, 129, 273, 451
Ple19I	CGATCG	1 cut(s)	721
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	281, 408
PspGI	CCWGG	2 cut(s)	281, 408
PspN4I	GGNNCC	2 cut(s)	238, 653
PspPI	GGNCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	3 cut(s)	13, 651, 700
PvuI	CGATCG	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	594, 711
RsaNI	GTAC	2 cut(s)	593, 710
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	7 cut(s)	71, 74, 122, 125, 128, 272, 450
Sau3AI	GATC	8 cut(s)	13, 189, 346, 651, 672, 700, 718, 722
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	3 cut(s)	178, 283, 410
SfaNI	GCATC	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	17, 326
SmoI	CTYRAG	2 cut(s)	17, 326
Sse9I	AATT	4 cut(s)	108, 226, 425, 660
SsiI	CCGC	6 cut(s)	198, 217, 262, 383, 413, 599
SspMI	CTAG	4 cut(s)	336, 540, 569, 704
StyD4I	CCNGG	3 cut(s)	176, 281, 408
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	5 cut(s)	101, 136, 717, 721, 739
TasI	AATT	4 cut(s)	108, 226, 425, 660
TatI	WGTACW	2 cut(s)	592, 709
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	1 cut(s)	682
TseI	GCWGC	7 cut(s)	70, 73, 121, 124, 127, 271, 449
TspDTI	ATGAA	2 cut(s)	525, 636
TspRI	CASTG	1 cut(s)	682
XapI	RAATTY	2 cut(s)	425, 660
XbaI	TCTAGA	1 cut(s)	568
XspI	CTAG	4 cut(s)	336, 540, 569, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.