pycom08g00380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0016612
Physical Location & Seq
Forward (+)
347545 .. 347871
327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGGCATCATCAGCACCACCAAGCTCCTCCGCGGGCGTCCAGAACTCAAAGAAATCGTTGGGGCTCATAGCAAATGCTGTGAAGCGCAAGGACAGCTTCATCCAGTTCTTCGCAATGACTGGAATTCTGCTGCTGAGCGTCAGATCGCTGGGCCAGAAGTACCGCCTCCACAATCTTCAGGAGGACACGACGGCTCTCAAGGAGGAGCAGGAAGCCCTAGCCGAGCGCACGAGGAACATCAAGCGGGACCTCCTCCACGAGGCCTCTCTCGAACCCACTGGTCTCTTCGCTTCCAGGCTTCGCCTTCTCTTTGGAGAACGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.0

Weight (kDa)

9.77

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20430
malus_domestica MD08G1004900.v1.1 MD11G1257900.v1.1
prunus_persica Prupe.1G357000_v2.0.a1
pyrus_communis pycom08g00380
rosa_chinensis RchiOBHm_Chr6g0303941
rosa_laevigata RLG00000011031
rosa_multiflora Rmu_sc0004644.1_g000012
rosa_roxburghii Rroxscaffold_7G00164240
rosa_samantha Rh6AG440400 Rh6BG462500 Rh6CG452700 Rh6DG439700
rosa_wichuraiana Rw6G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 30, 32, 163, 244
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 259
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 2 cut(s) 24, 96
AluI AGCT 2 cut(s) 24, 96
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 2 cut(s) 151, 261
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 123
AspLEI GCGC 2 cut(s) 87, 228
AspS9I GGNCC 2 cut(s) 151, 247
AvaII GGWCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 2 cut(s) 229, 257
BbvI GCAGC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 151, 247
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 14
Bpu1102I GCTNAGC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 3 cut(s) 103, 124, 283
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 3 cut(s) 103, 124, 283
BseRI GAGGAG 3 cut(s) 16, 218, 242
BseXI GCAGC 1 cut(s) 117
BseYI CCCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 153, 263
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 2 cut(s) 153, 263
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 143
Bsp1720I GCTNAGC 1 cut(s) 134
BspACI CCGC 4 cut(s) 30, 32, 163, 244
BspANI GGCC 2 cut(s) 153, 263
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 3 cut(s) 103, 124, 283
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 143
BssNI GRCGYC 1 cut(s) 36
BssSI CACGAG 2 cut(s) 229, 257
Bst2BI CACGAG 2 cut(s) 229, 257
Bst2UI CCWGG 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 290
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 2 cut(s) 87, 228
BstKTI GATC 1 cut(s) 146
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 2 cut(s) 11, 93
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 293
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 153, 263
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 2 cut(s) 87, 228
Cfr13I GGNCC 2 cut(s) 151, 247
Cfr42I CCGCGG 1 cut(s) 33
CseI GACGC 2 cut(s) 25, 127
Csp6I GTAC 1 cut(s) 160
CviJI RGCY 9 cut(s) 24, 64, 96, 153, 194, 215, 221, 263, 298
CviKI_1 RGCY 9 cut(s) 24, 64, 96, 153, 194, 215, 221, 263, 298
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 66
FaiI YATR 1 cut(s) 68
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 260
FauI CCCGC 2 cut(s) 25, 237
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 218
GlaI GCGC 2 cut(s) 86, 227
GluI GCNGC 1 cut(s) 131
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 2 cut(s) 153, 263
HgaI GACGC 2 cut(s) 25, 127
HhaI GCGC 2 cut(s) 87, 228
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 2 cut(s) 85, 226
HinP1I GCGC 2 cut(s) 85, 226
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 40, 179, 269
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 93
HpyF3I CTNAG 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 2 cut(s) 85, 226
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 29, 205
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 218
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 3 cut(s) 100, 167, 277
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 123
MnlI CCTC 9 cut(s) 37, 175, 176, 196, 225, 253, 260, 263, 274
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 295
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 11, 93
NdeII GATC 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 248
NmeAIII GCCGAG 1 cut(s) 247
PceI AGGCCT 1 cut(s) 263
PkrI GCNGC 1 cut(s) 132
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 2 cut(s) 151, 247
PspPPI RGGWCCY 1 cut(s) 247
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacII CCGCGG 1 cut(s) 33
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 2 cut(s) 151, 247
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 1 cut(s) 66
SetI ASST 3 cut(s) 26, 98, 252
SfaNI GCATC 1 cut(s) 14
Sfr303I CCGCGG 1 cut(s) 33
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 123
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 4 cut(s) 30, 32, 163, 244
SspMI CTAG 1 cut(s) 218
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 293
TaqI TCGA 1 cut(s) 270
TasI AATT 1 cut(s) 123
TscAI CASTG 1 cut(s) 283
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 88
TspRI CASTG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 247
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 123
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.