Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015179

Physical Location & Seq

Genomic Coordinates Forward (+)

382647 .. 385424

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGTCCGATGCGTCGTCCGAGTTCGATCCCGCTCATGTCGCGCTGTATGCGTTGGGCATTGGAGCTTGCGCTCGGGATGCCGTGGATGTCGACCAACTGAAATATGTTTATCATGAAAAGGGCCAGAATTTCATCCAGGTCTTGCCGACGTTTTCTGCTCTATTCTCGCTCGGATCTCTGCCAGGTGGTGCTGGTCTTCCAGGGTTGCACAAACTGGAATTTCTGGTTTTTGTTGCCGCCAGATATGATCCGCAACTCTTGCTGCATGGACAACAATACATAGAACTCTACAAGCCACTGCCTTCAAGTGCTGTTTTAAAAAATATTGTGACTCTTGCTGGACTCCATGATAAAGGTAAAGCTGCTATTCTCGAGATTGAAACAAAAAGTTACGACAAAGATTCTGGTGTACTGTATTGCATGAATCGGTCGACTGTTTTTCTGCGAGGTGCTGGTGGCTTCTCAAAATCATCCCAGCGGTATTCGTATTCAACCTATCCAAAAGACCAGGTTGCATCTGTGACAACCCCAAAAGGTCAACCTTTTGCAGTGTATGAAGATTGTACACAGCCATCTCAGGCATTGCTATATAGGCTATCTGGAGATTACAATCCTTTGCATTCAGATCCTATGTTCGCAAAAGCTGCAGGGTTCACACGGCCGATACTGCATGGCTTGTGCACACTTGGATTTGCAGTCAGGGCAATTGTGAAATGCATTTGCGGAGAAGATCCAAACCTGGTCAAGTGTGTATCAGGCCGGTTCCTGTTACATGTCTACCCTGGTGAAACTTTGCTCACTGAAATGTGGCTCGAAGGCCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033542 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:0080023 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MaoC_dehydrat_N MaoC_dehydratas

Protein Analysis

277

Amino Acids

30.12

Weight (kDa)

7.06

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFE-2_hydrat-2_N	PF22622	9 - 151	6e-30	MFE-2 hydratase 2 N-terminal domain
MaoC_dehydratas	PF01575	178 - 274	2.8e-23	MaoC like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76150
fragaria_vesca	FvH4_2g37800 FvH4_2g37800
malus_domestica	MD08G1005200.v1.1
prunus_persica	Prupe.1G357300_v2.0.a1 Prupe.1G357300_v2.0.a1
pyrus_communis	pycom08g00420
rosa_chinensis	RchiOBHm_Chr6g0303911
rosa_laevigata	RLG00000011035
rosa_roxburghii	Rroxscaffold_7G00164270
rosa_rugosa	Rorug06G0325900
rosa_samantha	Rh6AG440100 Rh6BG462900 Rh6CG452400 Rh6DG439400
rosa_wichuraiana	Rw6G038110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	35
AccI	GTMKAC	3 cut(s)	93, 434, 780
AccII	CGCG	1 cut(s)	44
AciI	CCGC	5 cut(s)	33, 240, 254, 481, 726
AclWI	GGATC	5 cut(s)	23, 184, 245, 623, 728
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	2 cut(s)	130, 221
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	414, 568
AflIII	ACRYGT	1 cut(s)	775
AgsI	TTSAA	3 cut(s)	309, 383, 495
AjnI	CCWGG	6 cut(s)	138, 184, 202, 510, 741, 784
AluBI	AGCT	3 cut(s)	68, 365, 647
AluI	AGCT	3 cut(s)	68, 365, 647
Alw21I	GWGCWC	1 cut(s)	686
Alw44I	GTGCAC	1 cut(s)	682
AlwI	GGATC	5 cut(s)	23, 184, 245, 623, 728
Ama87I	CYCGRG	2 cut(s)	75, 374
AoxI	GGCC	4 cut(s)	124, 662, 760, 820
ApaLI	GTGCAC	1 cut(s)	682
ApeKI	GCWGC	3 cut(s)	265, 365, 647
ApoI	RAATTY	2 cut(s)	130, 221
AspLEI	GCGC	2 cut(s)	46, 74
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	800
AvaI	CYCGRG	2 cut(s)	75, 374
AxyI	CCTNAGG	1 cut(s)	824
BaeGI	GKGCMC	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	686
BbvI	GCAGC	3 cut(s)	252, 352, 634
BccI	CCATC	1 cut(s)	583
BceAI	ACGGC	2 cut(s)	68, 677
BciT130I	CCWGG	6 cut(s)	140, 186, 204, 512, 743, 786
BfmI	CTRYAG	1 cut(s)	648
BisI	GCNGC	4 cut(s)	240, 266, 366, 648
BlsI	GCNGC	4 cut(s)	241, 267, 367, 649
Bme1390I	CCNGG	6 cut(s)	140, 186, 204, 512, 743, 786
BmeT110I	CYCGRG	2 cut(s)	75, 374
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	767
BmrFI	CCNGG	6 cut(s)	140, 186, 204, 512, 743, 786
BmsI	GCATC	2 cut(s)	70, 527
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	84, 203, 784
Bse118I	RCCGGY	1 cut(s)	762
Bse1I	ACTGG	1 cut(s)	222
Bse21I	CCTNAGG	1 cut(s)	824
Bse3DI	GCAATG	1 cut(s)	584
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	6 cut(s)	140, 186, 204, 512, 743, 786
BseDI	CCNNGG	3 cut(s)	84, 203, 784
BseGI	GGATG	4 cut(s)	85, 94, 135, 473
BseJI	GATNNNNATC	1 cut(s)	612
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	2 cut(s)	593, 815
BseNI	ACTGG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	686
BseX3I	CGGCCG	1 cut(s)	662
BseXI	GCAGC	3 cut(s)	252, 352, 634
BseYI	CCCAGC	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	2 cut(s)	434, 665
BshFI	GGCC	4 cut(s)	126, 664, 762, 822
BsiEI	CGRYCG	2 cut(s)	434, 665
BsiHKAI	GWGCWC	1 cut(s)	686
BsiHKCI	CYCGRG	2 cut(s)	75, 374
BsiSI	CCGG	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	4 cut(s)	126, 664, 762, 822
BsoBI	CYCGRG	2 cut(s)	75, 374
Bsp1286I	GDGCHC	1 cut(s)	686
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	5 cut(s)	28, 176, 250, 628, 733
BspACI	CCGC	5 cut(s)	33, 240, 254, 481, 726
BspANI	GGCC	4 cut(s)	126, 664, 762, 822
BspCNI	CTCAG	2 cut(s)	592, 816
BspFNI	CGCG	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	767
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	5 cut(s)	23, 184, 245, 623, 728
BsrBI	CCGCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	762
BsrGI	TGTACA	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	762
BssECI	CCNNGG	3 cut(s)	84, 203, 784
BssMI	GATC	5 cut(s)	28, 176, 250, 628, 733
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	6 cut(s)	140, 186, 204, 512, 743, 786
Bst4CI	ACNGT	2 cut(s)	417, 439
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	262, 647
BstAUI	TGTACA	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	579, 824
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	4 cut(s)	85, 94, 135, 473
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	46, 74
BstKTI	GATC	5 cut(s)	31, 179, 253, 631, 736
BstMBI	GATC	5 cut(s)	28, 176, 250, 628, 733
BstMCI	CGRYCG	2 cut(s)	434, 665
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 41, 50, 80, 262, 595, 647, 670, 704
BstNI	CCWGG	6 cut(s)	140, 186, 204, 512, 743, 786
BstNSI	RCATGY	1 cut(s)	779
BstSCI	CCNGG	6 cut(s)	138, 184, 202, 510, 741, 784
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	1 cut(s)	686
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	252, 352, 634
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	3 cut(s)	176, 628, 733
BstYI	RGATCY	3 cut(s)	176, 628, 733
BstZI	CGGCCG	1 cut(s)	662
Bsu36I	CCTNAGG	1 cut(s)	824
BsuRI	GGCC	4 cut(s)	126, 664, 762, 822
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	4 cut(s)	85, 94, 135, 473
BtsI	GCAGTG	2 cut(s)	299, 558
BtsIMutI	CAGTG	3 cut(s)	299, 558, 801
Cac8I	GCNNGC	1 cut(s)	70
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	2 cut(s)	46, 74
Cfr10I	RCCGGY	1 cut(s)	762
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	3
CsiI	ACCWGGT	2 cut(s)	510, 741
Csp6I	GTAC	2 cut(s)	413, 567
CviAII	CATG	7 cut(s)	38, 116, 269, 350, 424, 674, 776
CviQI	GTAC	2 cut(s)	413, 567
DdeI	CTNAG	2 cut(s)	579, 824
DpnI	GATC	5 cut(s)	30, 178, 252, 630, 735
DpnII	GATC	5 cut(s)	28, 176, 250, 628, 733
DraI	TTTAAA	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	662
EagI	CGGCCG	1 cut(s)	662
EclXI	CGGCCG	1 cut(s)	662
Eco147I	AGGCCT	1 cut(s)	822
Eco52I	CGGCCG	1 cut(s)	662
Eco81I	CCTNAGG	1 cut(s)	824
Eco88I	CYCGRG	2 cut(s)	75, 374
EcoRII	CCWGG	6 cut(s)	138, 184, 202, 510, 741, 784
EcoT22I	ATGCAT	1 cut(s)	722
FaeI	CATG	7 cut(s)	41, 119, 272, 353, 427, 677, 779
FatI	CATG	7 cut(s)	37, 115, 268, 349, 423, 673, 775
FauI	CCCGC	1 cut(s)	40
FblI	GTMKAC	3 cut(s)	93, 434, 780
Fnu4HI	GCNGC	4 cut(s)	240, 266, 366, 648
FokI	GGATG	4 cut(s)	92, 101, 122, 460
Fsp4HI	GCNGC	4 cut(s)	240, 266, 366, 648
GlaI	GCGC	2 cut(s)	45, 73
GluI	GCNGC	4 cut(s)	240, 266, 366, 648
GsaI	CCCAGC	1 cut(s)	481
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	126, 664, 762, 822
HapII	CCGG	1 cut(s)	763
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	2 cut(s)	46, 74
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	41, 119, 272, 353, 427, 677, 779
Hin6I	GCGC	2 cut(s)	44, 72
HinP1I	GCGC	2 cut(s)	44, 72
HincII	GTYRAC	3 cut(s)	94, 435, 542
HindII	GTYRAC	3 cut(s)	94, 435, 542
HinfI	GANTC	4 cut(s)	334, 345, 404, 427
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	8 cut(s)	94, 413, 435, 542, 569, 657, 684, 781
Hpy188I	TCNGA	4 cut(s)	10, 22, 176, 628
Hpy188III	TCNNGA	5 cut(s)	77, 116, 374, 376, 603
Hpy8I	GTNNAC	8 cut(s)	94, 413, 435, 542, 569, 657, 684, 781
Hpy99I	CGWCG	2 cut(s)	19, 154
HpyAV	CCTTC	2 cut(s)	315, 812
HpyCH4III	ACNGT	2 cut(s)	417, 439
HpyCH4IV	ACGT	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 41, 50, 80, 262, 595, 647, 670, 704
HpyF3I	CTNAG	2 cut(s)	579, 824
HpySE526I	ACGT	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	41, 119, 272, 353, 427, 677, 779
HspAI	GCGC	2 cut(s)	44, 72
Kzo9I	GATC	5 cut(s)	28, 176, 250, 628, 733
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	3 cut(s)	252, 352, 634
LweI	GCATC	2 cut(s)	70, 527
MabI	ACCWGGT	2 cut(s)	510, 741
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	4 cut(s)	331, 392, 523, 771
MalI	GATC	5 cut(s)	30, 178, 252, 630, 735
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	5 cut(s)	28, 176, 250, 628, 733
MboII	GAAGA	3 cut(s)	191, 572, 743
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	3 cut(s)	176, 628, 733
MhlI	GDGCHC	1 cut(s)	686
MluCI	AATT	3 cut(s)	130, 221, 708
MlyI	GAGTC	2 cut(s)	328, 339
MnlI	CCTC	2 cut(s)	443, 819
Mph1103I	ATGCAT	1 cut(s)	722
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	6 cut(s)	140, 186, 204, 512, 743, 786
MunI	CAATTG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	6 cut(s)	140, 186, 204, 512, 743, 786
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	9 cut(s)	11, 41, 50, 80, 262, 595, 647, 670, 704
NdeII	GATC	5 cut(s)	28, 176, 250, 628, 733
NlaIII	CATG	7 cut(s)	41, 119, 272, 353, 427, 677, 779
NlaIV	GGNNCC	1 cut(s)	767
NmuCI	GTSAC	2 cut(s)	331, 523
NsiI	ATGCAT	1 cut(s)	722
NspI	RCATGY	1 cut(s)	779
PaeR7I	CTCGAG	1 cut(s)	374
PagI	TCATGA	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	822
PciI	ACATGT	1 cut(s)	775
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	2 cut(s)	404, 427
PkrI	GCNGC	4 cut(s)	241, 267, 367, 649
PleI	GAGTC	2 cut(s)	328, 339
PpsI	GAGTC	2 cut(s)	328, 339
PscI	ACATGT	1 cut(s)	775
Psp6I	CCWGG	6 cut(s)	138, 184, 202, 510, 741, 784
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	6 cut(s)	138, 184, 202, 510, 741, 784
PspN4I	GGNNCC	1 cut(s)	767
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	3 cut(s)	176, 628, 733
RsaI	GTAC	2 cut(s)	414, 568
RsaNI	GTAC	2 cut(s)	413, 567
RseI	CAYNNNNRTG	1 cut(s)	806
SalI	GTCGAC	2 cut(s)	92, 433
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	4 cut(s)	240, 266, 366, 648
Sau3AI	GATC	5 cut(s)	28, 176, 250, 628, 733
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	2 cut(s)	328, 339
ScrFI	CCNGG	6 cut(s)	140, 186, 204, 512, 743, 786
SduI	GDGCHC	1 cut(s)	686
SexAI	ACCWGGT	2 cut(s)	510, 741
SfaNI	GCATC	2 cut(s)	70, 527
SfcI	CTRYAG	1 cut(s)	648
Sfr274I	CTCGAG	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	130, 221, 708
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	5 cut(s)	33, 240, 254, 481, 726
SspI	AATATT	1 cut(s)	328
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	6 cut(s)	138, 184, 202, 510, 741, 784
TaaI	ACNGT	2 cut(s)	417, 439
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	5 cut(s)	27, 93, 375, 434, 816
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	3 cut(s)	130, 221, 708
TatI	WGTACW	2 cut(s)	412, 566
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	404, 427
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	3 cut(s)	306, 558, 808
TseFI	GTSAC	2 cut(s)	331, 523
TseI	GCWGC	3 cut(s)	265, 365, 647
Tsp45I	GTSAC	2 cut(s)	331, 523
TspDTI	ATGAA	4 cut(s)	124, 132, 440, 573
TspRI	CASTG	3 cut(s)	306, 558, 808
VneI	GTGCAC	1 cut(s)	682
XapI	RAATTY	2 cut(s)	130, 221
XceI	RCATGY	1 cut(s)	779
XhoI	CTCGAG	1 cut(s)	374
XmiI	GTMKAC	3 cut(s)	93, 434, 780
Zsp2I	ATGCAT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.