Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0019823

Physical Location & Seq

Genomic Coordinates Reverse (-)

2456467 .. 2457214

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g03100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTTAGGATAGTTGTAGGGAAGCGATTCCATGGTGCAACTACGTTGCATGAGAAAGAAGAGAACGAAAGGTGTCAAAAGGCGTTGGGGGATTTTTTGAAGCTGAGTAGTGAGTTTGTGATCGCGGATAAAGTTCCGTTTCTTAGGTGGTTTGATTTTGGTGGGAGTGAGAAGGCGATGAAGCAGACAGCAAAAGTTCTTGATGGTGCACTTCAAGGATGGTTGGAAGAACACAAGCAAAAGAGATCAAGTAGTACTGCTTCAGGAAGTGCGAAGGTTGGTGAGCATGATTTCATGCACACGATGATTTCAATTCTTGATGACACTACAAAAGAGTTTCAACCTTCCACTAGTCCTTCTTCTGATACAATTAACAAAGCTACTTGCCTGACGGTTATTCTAGGAGGGACGGATCCCACAATAGCGACCTTAACGTGGGTTCTTTCTTTATTACTGAACAACCGTGAAGCCTTGAGGAAGGCTCAAGAAGAACTAGACAAACAGGTTGGGAGGGAAAGGCAAGTGAAAGAATCAGACGTGAAAAACTTGGTCTATCTCCAAGCAGTTATCAAAGAAACTTTACGTTTATATCCTCCTTCGCCACTCGCAATCCCACATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko00981 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map00981 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

208

Amino Acids

23.15

Weight (kDa)

7.79

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019823)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g03100
rosa_chinensis	RchiOBHm_Chr5g0058881 RchiOBHm_Chr6g0300081
rosa_laevigata	RLG00000011366 RLG00000011368
rosa_roxburghii	Rroxscaffold_7G00168100
rosa_rugosa	Rorug06G0293800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	407, 420
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	100, 215, 312, 341
AhlI	ACTAGT	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	538
AluBI	AGCT	2 cut(s)	103, 380
AluI	AGCT	2 cut(s)	103, 380
Alw21I	GWGCWC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	407, 420
ApaLI	GTGCAC	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	412
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
Bbv12I	GWGCWC	1 cut(s)	211
BccI	CCATC	2 cut(s)	197, 213
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	3 cut(s)	351, 401, 494
BmcAI	AGTACT	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	538
BmiI	GGNNCC	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BpuEI	CTTGAG	2 cut(s)	468, 493
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	120, 245, 412
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	407, 420
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	120, 245, 412
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	394, 464
Bst6I	CTCTTC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	104, 143
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	3 cut(s)	123, 248, 415
BstMBI	GATC	3 cut(s)	120, 245, 412
BstNSI	RCATGY	1 cut(s)	620
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	31
BtgZI	GCGATG	1 cut(s)	191
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	6 cut(s)	32, 50, 287, 295, 617, 621
CviJI	RGCY	4 cut(s)	103, 380, 470, 482
CviKI_1	RGCY	4 cut(s)	103, 380, 470, 482
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	2 cut(s)	104, 143
DpnI	GATC	3 cut(s)	122, 247, 414
DpnII	GATC	3 cut(s)	120, 245, 412
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	6 cut(s)	35, 53, 290, 298, 620, 624
FaiI	YATR	7 cut(s)	33, 51, 288, 296, 589, 618, 622
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	6 cut(s)	31, 49, 286, 294, 616, 620
FokI	GGATG	1 cut(s)	231
FspBI	CTAG	3 cut(s)	351, 401, 494
Hin1II	CATG	6 cut(s)	35, 53, 290, 298, 620, 624
HinfI	GANTC	2 cut(s)	27, 530
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	364, 535
Hpy188III	TCNNGA	4 cut(s)	200, 264, 317, 485
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	6 cut(s)	166, 268, 354, 366, 472, 606
HpyCH4III	ACNGT	2 cut(s)	394, 464
HpyCH4IV	ACGT	4 cut(s)	44, 434, 537, 583
HpyCH4V	TGCA	5 cut(s)	38, 49, 209, 298, 620
HpyF3I	CTNAG	2 cut(s)	104, 143
HpySE526I	ACGT	4 cut(s)	44, 434, 537, 583
Hsp92II	CATG	6 cut(s)	35, 53, 290, 298, 620, 624
Kzo9I	GATC	3 cut(s)	120, 245, 412
LpnPI	CCDG	3 cut(s)	249, 401, 488
MaeI	CTAG	3 cut(s)	351, 401, 494
MaeII	ACGT	4 cut(s)	44, 434, 537, 583
MalI	GATC	3 cut(s)	122, 247, 414
MboI	GATC	3 cut(s)	120, 245, 412
MboII	GAAGA	4 cut(s)	71, 239, 351, 500
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	2 cut(s)	312, 369
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	398, 468, 504, 603
Mph1103I	ATGCAT	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	2 cut(s)	372, 431
MslI	CAYNNNNRTG	1 cut(s)	619
MvnI	CGCG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	120, 245, 412
NlaIII	CATG	6 cut(s)	35, 53, 290, 298, 620, 624
NlaIV	GGNNCC	1 cut(s)	414
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	27, 530
PspN4I	GGNNCC	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	619
SaqAI	TTAA	2 cut(s)	372, 431
Sau3AI	GATC	3 cut(s)	120, 245, 412
ScaI	AGTACT	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	619
SmlI	CTYRAG	2 cut(s)	472, 483
SmoI	CTYRAG	2 cut(s)	472, 483
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	2 cut(s)	312, 369
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	3 cut(s)	351, 401, 494
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	394, 464
TaiI	ACGT	4 cut(s)	47, 437, 540, 586
TasI	AATT	2 cut(s)	312, 369
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	27, 530
Tru1I	TTAA	2 cut(s)	372, 431
Tru9I	TTAA	2 cut(s)	372, 431
TspDTI	ATGAA	2 cut(s)	194, 283
TspGWI	ACGGA	2 cut(s)	126, 425
VneI	GTGCAC	1 cut(s)	207
XceI	RCATGY	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	3 cut(s)	351, 401, 494
ZrmI	AGTACT	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.