Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019823

Physical Location & Seq

Genomic Coordinates Reverse (-)

8894559 .. 8896247

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011368

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGAATACGAGAGTTGCACGGTATGTGGGTCGAAAAAGAGTCACGCGCTCTTGTGCTCGTGGAAATAAAGCATTGGTTAGAAGATGCCATTTTTGTGGTGGTTGGATGCCAGAAAGCAATCAATCAGGGACATGAGAAGGCTATGAAGAAGACCGCCAAGGACTTGGATCAAATACTTGGTGGGAGGCTGGAAGAGCATCGCCAGAGGAGACTAAAATCTAACTGTGATAAGGTCAAGGCCAAAGGTGTGGAGGAGGCTAGGAGGACTTCATTGCTGTCATGTTGTCTCTTCAAGAACAAGGAGAGCTCTCCAACTTTCAGCATGACAGCATCAAGTCTACCTGTCTGGTACTCTGACGTGGGCTATCTCATTACTCCTGAACACTCACCACATGTTAAAGAAGGGATCCAAAAGGCACAGGAAGAGTTAGACCTCCAGGTAGGACTGCGAGAGCTTTGGAAGATTGCATCGTGGCTAGGTACGTACCACGTGCCTGCTGGTACCCGGCTGGTCGTAAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

176

Amino Acids

19.85

Weight (kDa)

8.87

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019823)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g03100
rosa_chinensis	RchiOBHm_Chr5g0058881 RchiOBHm_Chr6g0300081
rosa_laevigata	RLG00000011366 RLG00000011368
rosa_roxburghii	Rroxscaffold_7G00168100
rosa_rugosa	Rorug06G0293800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	1 cut(s)	48
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	3 cut(s)	177, 403, 416
AcvI	CACGTG	1 cut(s)	493
AfaI	GTAC	4 cut(s)	353, 484, 488, 505
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	2 cut(s)	309, 457
AluI	AGCT	2 cut(s)	309, 457
Alw21I	GWGCWC	2 cut(s)	60, 311
Alw26I	GTCTC	2 cut(s)	205, 293
AlwI	GGATC	3 cut(s)	177, 403, 416
AoxI	GGCC	1 cut(s)	240
Asp718I	GGTACC	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	311
BauI	CACGAG	1 cut(s)	59
BbrPI	CACGTG	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	60, 311
BciT130I	CCWGG	1 cut(s)	440
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	205, 293
BfaI	CTAG	2 cut(s)	261, 479
Bme1390I	CCNGG	2 cut(s)	440, 508
BmgBI	CACGTC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	410, 505
BmrFI	CCNGG	2 cut(s)	440, 508
BmsI	GCATC	5 cut(s)	76, 98, 208, 341, 479
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	508
BsaAI	YACGTR	2 cut(s)	486, 493
BsaJI	CCNNGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	272
BseRI	GAGGAG	2 cut(s)	223, 269
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	2 cut(s)	60, 311
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	205, 293
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	60, 311
Bsp143I	GATC	2 cut(s)	169, 408
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	410, 505
BspPI	GGATC	3 cut(s)	177, 403, 416
BspQI	GCTCTTC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	169, 408
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	23, 227
Bst6I	CTCTTC	3 cut(s)	189, 296, 420
BstBAI	YACGTR	2 cut(s)	486, 493
BstC8I	GCNNGC	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	172, 411
BstMAI	GTCTC	2 cut(s)	205, 293
BstMBI	GATC	2 cut(s)	169, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	438, 506
BstSNI	TACGTA	1 cut(s)	486
BstUI	CGCG	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	408
BstXI	CCANNNNNNTGG	3 cut(s)	97, 166, 250
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	242
BtgZI	GCGATG	1 cut(s)	185
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	1 cut(s)	50
Csp6I	GTAC	4 cut(s)	352, 483, 487, 504
CviAII	CATG	4 cut(s)	134, 282, 325, 395
CviJI	RGCY	9 cut(s)	143, 190, 242, 260, 309, 366, 457, 478, 511
CviKI_1	RGCY	9 cut(s)	143, 190, 242, 260, 309, 366, 457, 478, 511
CviQI	GTAC	4 cut(s)	352, 483, 487, 504
DpnI	GATC	2 cut(s)	171, 410
DpnII	GATC	2 cut(s)	169, 408
Eam1104I	CTCTTC	3 cut(s)	189, 296, 420
EarI	CTCTTC	3 cut(s)	189, 296, 420
Ecl136II	GAGCTC	1 cut(s)	309
Eco105I	TACGTA	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	309
Eco72I	CACGTG	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	4 cut(s)	137, 285, 328, 398
FaiI	YATR	6 cut(s)	26, 135, 146, 283, 326, 396
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	4 cut(s)	133, 281, 324, 394
FblI	GTMKAC	1 cut(s)	340
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	311
FspBI	CTAG	2 cut(s)	261, 479
GlaI	GCGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	508
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	137, 285, 328, 398
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	2 cut(s)	295, 380
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	133, 398
HpyCH4III	ACNGT	2 cut(s)	23, 227
HpyCH4IV	ACGT	3 cut(s)	360, 485, 492
HpyCH4V	TGCA	2 cut(s)	19, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpySE526I	ACGT	3 cut(s)	360, 485, 492
Hsp92II	CATG	4 cut(s)	137, 285, 328, 398
HspAI	GCGC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	507
Kzo9I	GATC	2 cut(s)	169, 408
LguI	GCTCTTC	1 cut(s)	189
LweI	GCATC	5 cut(s)	76, 98, 208, 341, 479
MaeI	CTAG	2 cut(s)	261, 479
MaeII	ACGT	3 cut(s)	360, 485, 492
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	2 cut(s)	171, 410
MboI	GATC	2 cut(s)	169, 408
MboII	GAAGA	7 cut(s)	95, 160, 163, 206, 283, 437, 475
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	60, 311
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	85, 338
MnlI	CCTC	6 cut(s)	180, 201, 247, 250, 258, 446
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	2 cut(s)	440, 508
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	508
NdeII	GATC	2 cut(s)	169, 408
NlaIII	CATG	4 cut(s)	137, 285, 328, 398
NlaIV	GGNNCC	2 cut(s)	410, 505
NmuCI	GTSAC	1 cut(s)	42
NspI	RCATGY	1 cut(s)	398
PciI	ACATGT	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	49
PmaCI	CACGTG	1 cut(s)	493
PmlI	CACGTG	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	2 cut(s)	486, 493
PscI	ACATGT	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	438
PspCI	CACGTG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	410, 505
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	4 cut(s)	353, 484, 488, 505
RsaNI	GTAC	4 cut(s)	352, 483, 487, 504
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	169, 408
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	440, 508
SduI	GDGCHC	2 cut(s)	60, 311
SfaNI	GCATC	5 cut(s)	76, 98, 208, 341, 479
SmiMI	CAYNNNNRTG	1 cut(s)	95
SnaBI	TACGTA	1 cut(s)	486
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	261, 479
SstI	GAGCTC	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	438, 506
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	23, 227
TaiI	ACGT	3 cut(s)	363, 488, 495
TaqI	TCGA	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	161, 261
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	2 cut(s)	97, 497
XmiI	GTMKAC	1 cut(s)	340
XspI	CTAG	2 cut(s)	261, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.