Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019823

Physical Location & Seq

Genomic Coordinates Forward (+)

61048026 .. 61049430

Gene Structure 1405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTGTGAGGTGGTGCCTGGCTTGAGAAATCATCATACGTGCGGGGGCGTGTTGAGAATGTGTATAAATATAACTCTAACATTGAAAAAATATAACTTTGCTTGTGGGGGGAAAACGTTAATTTGGCGGTCGGCAGCTGCATGTGACGAGGAGGTGAGGCGGTGCCAGAAAGCAATCAATCAGTTTTTTCATCTAACTGGGATCTTTGTGGTTTCTGATGCAGTGCCGTTTTTGTTGTGGTTGGAGTTGCAGGGGCATGAGAAGGCTATGAAGAAGACCACCAAGGACTTGGATCAAATACTTGGTGGGAGGCTGGAGGAGCATCGCCAGAGGAGATTAAAATCTAACTGTGATAAGGTCAAGGCCAAAGGTGTGGAGGAGGCTAGGAGGACTTCATTGCTGTCATGTTGTCTCTTCTCGAACAAGGAGAGCTCTCCAACTTTCAGCATGACAGCATATGTCTACCTGTCTGTTATCCTAGGTGGCAGTGACATGAAATCAAGTACTCTGATGTGGGCCATCTCTGTAATGCCCCGTACCATAAATTTTTTACTAGTTTTACCATTATTGACCAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

193

Amino Acids

21.74

Weight (kDa)

9.3

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	23 - 177	1.5e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019823)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g03100
rosa_chinensis	RchiOBHm_Chr5g0058881 RchiOBHm_Chr6g0300081
rosa_laevigata	RLG00000011366 RLG00000011368
rosa_roxburghii	Rroxscaffold_7G00168100
rosa_rugosa	Rorug06G0293800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	13, 162
AccI	GTMKAC	1 cut(s)	462
AciI	CCGC	3 cut(s)	42, 127, 160
AclI	AACGTT	1 cut(s)	116
AclWI	GGATC	2 cut(s)	209, 300
AcsI	RAATTY	1 cut(s)	544
AfaI	GTAC	2 cut(s)	505, 538
AgsI	TTSAA	1 cut(s)	85
AhlI	ACTAGT	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	2 cut(s)	137, 432
AluI	AGCT	2 cut(s)	137, 432
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	209, 300
AoxI	GGCC	2 cut(s)	363, 516
ApeKI	GCWGC	2 cut(s)	134, 137
ApoI	RAATTY	1 cut(s)	544
AspA2I	CCTAGG	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	166
AvrII	CCTAGG	1 cut(s)	478
BanI	GGYRCC	2 cut(s)	13, 162
BanII	GRGCYC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	124, 146
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	416
BcuI	ACTAGT	1 cut(s)	553
BfaI	CTAG	3 cut(s)	384, 479, 554
BisI	GCNGC	2 cut(s)	135, 138
BlnI	CCTAGG	1 cut(s)	478
BlsI	GCNGC	2 cut(s)	136, 139
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	2 cut(s)	15, 164
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	208, 331
BmuI	ACTGGG	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	282, 478, 573
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	395
Bse8I	GATNNNNATC	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	3 cut(s)	282, 478, 573
BseJI	GATNNNNATC	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	4 cut(s)	164, 332, 346, 392
BseXI	GCAGC	2 cut(s)	124, 146
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	365, 518
BshNI	GGYRCC	2 cut(s)	13, 162
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	2 cut(s)	365, 518
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	2 cut(s)	201, 292
BspACI	CCGC	3 cut(s)	42, 127, 160
BspANI	GGCC	2 cut(s)	365, 518
BspLI	GGNNCC	2 cut(s)	15, 164
BspPI	GGATC	2 cut(s)	209, 300
BspT107I	GGYRCC	2 cut(s)	13, 162
BsrDI	GCAATG	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	282, 478, 573
BssMI	GATC	2 cut(s)	201, 292
BssT1I	CCWWGG	3 cut(s)	282, 478, 573
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	39
BstKTI	GATC	2 cut(s)	204, 295
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	201, 292
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	124, 146
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	201
BstXI	CCANNNNNNTGG	2 cut(s)	289, 373
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	365, 518
BtgZI	GCGATG	1 cut(s)	308
BtsI	GCAGTG	2 cut(s)	228, 493
BtsIMutI	CAGTG	2 cut(s)	228, 493
Cfr13I	GGNCC	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	504, 537
CviAII	CATG	5 cut(s)	141, 257, 405, 448, 493
CviJI	RGCY	8 cut(s)	21, 137, 266, 313, 365, 383, 432, 518
CviKI_1	RGCY	8 cut(s)	21, 137, 266, 313, 365, 383, 432, 518
CviQI	GTAC	2 cut(s)	504, 537
DpnI	GATC	2 cut(s)	203, 294
DpnII	GATC	2 cut(s)	201, 292
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	432
Eco130I	CCWWGG	3 cut(s)	282, 478, 573
Eco24I	GRGCYC	1 cut(s)	434
Eco53kI	GAGCTC	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	3 cut(s)	282, 478, 573
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	3 cut(s)	282, 478, 573
FaeI	CATG	5 cut(s)	144, 260, 408, 451, 496
FatI	CATG	5 cut(s)	140, 256, 404, 447, 492
FauI	CCCGC	1 cut(s)	35
FauNDI	CATATG	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	2 cut(s)	135, 138
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	2 cut(s)	135, 138
FspBI	CTAG	3 cut(s)	384, 479, 554
GluI	GCNGC	2 cut(s)	135, 138
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	365, 518
Hin1II	CATG	5 cut(s)	144, 260, 408, 451, 496
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	2 cut(s)	217, 510
Hpy188III	TCNNGA	1 cut(s)	418
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	2 cut(s)	38, 116
HpyCH4V	TGCA	3 cut(s)	140, 221, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpySE526I	ACGT	2 cut(s)	38, 116
Hsp92II	CATG	5 cut(s)	144, 260, 408, 451, 496
Kzo9I	GATC	2 cut(s)	201, 292
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	8 cut(s)	3, 30, 179, 183, 236, 299, 341, 479
Lsp1109I	GCAGC	2 cut(s)	124, 146
LweI	GCATC	2 cut(s)	208, 331
MaeI	CTAG	3 cut(s)	384, 479, 554
MaeII	ACGT	2 cut(s)	38, 116
MaeIII	GTNAC	2 cut(s)	143, 488
MalI	GATC	2 cut(s)	203, 294
MboI	GATC	2 cut(s)	201, 292
MboII	GAAGA	3 cut(s)	283, 286, 406
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	2 cut(s)	120, 544
MmeI	TCCRAC	2 cut(s)	222, 461
MnlI	CCTC	9 cut(s)	142, 145, 150, 303, 310, 324, 370, 373, 381
MseI	TTAA	2 cut(s)	119, 338
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	2 cut(s)	201, 292
NlaIII	CATG	5 cut(s)	144, 260, 408, 451, 496
NlaIV	GGNNCC	2 cut(s)	15, 164
NmuCI	GTSAC	2 cut(s)	143, 488
NspI	RCATGY	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	136, 139
Ppu21I	YACGTR	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	434
Psp1406I	AACGTT	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	15, 164
PspPI	GGNCC	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	505, 538
RsaNI	GTAC	2 cut(s)	504, 537
SacI	GAGCTC	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	119, 338
SatI	GCNGC	2 cut(s)	135, 138
Sau3AI	GATC	2 cut(s)	201, 292
Sau96I	GGNCC	1 cut(s)	516
ScaI	AGTACT	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	434
SfaNI	GCATC	2 cut(s)	208, 331
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SpeI	ACTAGT	1 cut(s)	553
Sse9I	AATT	2 cut(s)	120, 544
SsiI	CCGC	3 cut(s)	42, 127, 160
SspMI	CTAG	3 cut(s)	384, 479, 554
SstI	GAGCTC	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	3 cut(s)	282, 478, 573
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	2 cut(s)	41, 119
TaqI	TCGA	1 cut(s)	419
TasI	AATT	2 cut(s)	120, 544
TatI	WGTACW	1 cut(s)	503
Tru1I	TTAA	2 cut(s)	119, 338
Tru9I	TTAA	2 cut(s)	119, 338
TscAI	CASTG	2 cut(s)	228, 493
TseFI	GTSAC	2 cut(s)	143, 488
TseI	GCWGC	2 cut(s)	134, 137
Tsp45I	GTSAC	2 cut(s)	143, 488
TspDTI	ATGAA	4 cut(s)	179, 284, 384, 509
TspRI	CASTG	2 cut(s)	228, 493
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmaJI	CCTAGG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	3 cut(s)	384, 479, 554
ZrmI	AGTACT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.