pycom08g05250

glutaredoxin-C6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015048
Physical Location & Seq
Reverse (-)
4041548 .. 4041985
438 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGCAAGGCCTACGGCGTTGCTCCAACGACCCCGTCCACCTCGGCCTCTCACCCGCCCCGACCTCGCCGTCCCCACCCGCTCCCACAAACAAGTCTTCCTCAACTCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGCATCCGCCGCCTCATCTCCGAGCACCCCGTCATCATATTCAGCAAAAGCTCCTGCTACATGTGTCACGTCATGAAGAAGCTCCTCGCCACCGTTGGCGTCCACCCCACCGTCATCGAATTGGACAATCACGAGATCGCTGCTCTCCCCTACGACGACCAACAACAACAGTCTTGTAATACTCCGCCAGCCGTTTTCATCGGCGGCACTTGTGTCGGCGGCCTCGAGTCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTCCCTAAACTCGTCCAAGTCGGTGCCCTCTGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

146

Amino Acids

15.4

Weight (kDa)

6.63

Isoelectric Point (pI)

69.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 57 - 118 8.5e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33040
fragaria_vesca FvH4_2g31700
malus_domestica MD08G1063800.v1.1 MD15G1057800.v1.1
prunus_persica Prupe.1G410500_v2.0.a1 Prupe.1G410500_v2.0.a1
pyrus_communis pycom08g05250
rosa_chinensis RchiOBHm_Chr6g0311131
rosa_multiflora Rmu_sc0008967.1_g000007
rosa_roxburghii Rroxscaffold_7G00158000
rosa_rugosa Rorug06G0385700
rosa_samantha Rh6AG499700 Rh6BG510400 Rh6CG516100 Rh6DG502600
rosa_wichuraiana Rw6G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 67
AatII GACGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 391
AcyI GRCGYC 2 cut(s) 117, 237
AflIII ACRYGT 1 cut(s) 198
AjiI CACGTC 1 cut(s) 208
AluBI AGCT 2 cut(s) 189, 220
AluI AGCT 2 cut(s) 189, 220
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 4 cut(s) 7, 43, 358, 391
ApeKI GCWGC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 362
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 422
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 386
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 119
BceAI ACGGC 3 cut(s) 29, 52, 314
BcgI CGANNNNNNTGC 4 cut(s) 260, 294, 334, 368
BcoDI GTCTC 1 cut(s) 128
BisI GCNGC 5 cut(s) 148, 279, 343, 358, 391
BlsI GCNGC 5 cut(s) 149, 280, 344, 359, 392
BmeT110I CYCGRG 1 cut(s) 362
BmgBI CACGTC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 424
BmsI GCATC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 386
BsaHI GRCGYC 2 cut(s) 117, 237
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 4 cut(s) 9, 45, 360, 393
BshNI GGYRCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 362
BslFI GGGAC 3 cut(s) 55, 352, 386
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 3 cut(s) 55, 352, 386
BsnI GGCC 4 cut(s) 9, 45, 360, 393
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 165, 427
Bsp143I GATC 1 cut(s) 273
BspANI GGCC 4 cut(s) 9, 45, 360, 393
BspCNI CTCAG 1 cut(s) 399
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 273
BssNI GRCGYC 2 cut(s) 117, 237
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 3 cut(s) 232, 250, 309
BstACI GRCGYC 2 cut(s) 117, 237
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 386
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 2 cut(s) 128, 147
BstNSI RCATGY 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 4 cut(s) 9, 45, 360, 393
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 327
CciI TCATGA 1 cut(s) 210
CseI GACGC 1 cut(s) 226
CviAII CATG 2 cut(s) 199, 211
CviJI RGCY 7 cut(s) 9, 45, 189, 220, 329, 360, 393
CviKI_1 RGCY 7 cut(s) 9, 45, 189, 220, 329, 360, 393
DdeI CTNAG 1 cut(s) 386
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DrdI GACNNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 391
EciI GGCGGA 3 cut(s) 118, 134, 312
Eco147I AGGCCT 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 362
FaeI CATG 2 cut(s) 202, 214
FaiI YATR 4 cut(s) 176, 200, 212, 436
FaqI GGGAC 3 cut(s) 55, 352, 386
FatI CATG 2 cut(s) 198, 210
FauI CCCGC 3 cut(s) 61, 85, 146
Fnu4HI GCNGC 5 cut(s) 148, 279, 343, 358, 391
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 5 cut(s) 148, 279, 343, 358, 391
GluI GCNGC 5 cut(s) 148, 279, 343, 358, 391
HaeIII GGCC 4 cut(s) 9, 45, 360, 393
HgaI GACGC 1 cut(s) 226
Hin1I GRCGYC 2 cut(s) 117, 237
Hin1II CATG 2 cut(s) 202, 214
HinfI GANTC 2 cut(s) 125, 365
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 37, 241
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 211, 269
Hpy8I GTNNAC 2 cut(s) 37, 241
Hpy99I CGWCG 4 cut(s) 119, 122, 296, 377
HpyCH4III ACNGT 3 cut(s) 232, 250, 309
HpyCH4IV ACGT 2 cut(s) 117, 207
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 147
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 2 cut(s) 117, 207
Hsp92I GRCGYC 2 cut(s) 117, 237
Hsp92II CATG 2 cut(s) 202, 214
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 4 cut(s) 26, 85, 194, 225
LpnPI CCDG 2 cut(s) 205, 339
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 150
MaeII ACGT 2 cut(s) 117, 207
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 275
MbiI CCGCTC 1 cut(s) 80
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 87, 226
MhlI GDGCHC 2 cut(s) 165, 427
MluCI AATT 1 cut(s) 257
MlyI GAGTC 2 cut(s) 134, 374
MmeI TCCRAC 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 128, 147
NdeII GATC 1 cut(s) 273
NlaIII CATG 2 cut(s) 202, 214
NlaIV GGNNCC 1 cut(s) 424
NmeAIII GCCGAG 3 cut(s) 21, 148, 157
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 362
PagI TCATGA 1 cut(s) 210
PceI AGGCCT 1 cut(s) 9
PciI ACATGT 1 cut(s) 198
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 360, 369
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 5 cut(s) 149, 280, 344, 359, 392
PleI GAGTC 2 cut(s) 133, 373
PpsI GAGTC 2 cut(s) 133, 373
PscI ACATGT 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 424
PspXI VCTCGAGB 1 cut(s) 362
PsyI GACNNNGTC 1 cut(s) 32
SatI GCNGC 5 cut(s) 148, 279, 343, 358, 391
Sau3AI GATC 1 cut(s) 273
SchI GAGTC 2 cut(s) 134, 374
SduI GDGCHC 2 cut(s) 165, 427
SetI ASST 8 cut(s) 42, 65, 120, 191, 210, 222, 387, 399
SfaNI GCATC 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 362
SlaI CTCGAG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 1 cut(s) 257
SseBI AGGCCT 1 cut(s) 9
StuI AGGCCT 1 cut(s) 9
TaaI ACNGT 3 cut(s) 232, 250, 309
TaiI ACGT 2 cut(s) 120, 210
TaqI TCGA 3 cut(s) 114, 255, 363
TasI AATT 1 cut(s) 257
TauI GCSGC 4 cut(s) 150, 345, 360, 393
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 227, 325
Tth111I GACNNNGTC 1 cut(s) 32
XceI RCATGY 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 362
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.