pycom08g05930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012130
Physical Location & Seq
Reverse (-)
4498078 .. 4498439
362 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGTCTCAGGTACCACCACTGTCCCGGCGAAAAAACATGGTTCTTCTGGACTGGATACAAGAGAGCAATCACAAGCTTATGACGGCAATGAGGAATGAACGAGCTCCGGTCAGTTGTATGAAGGCACAGATTAATACTGCCCTTGATGCACCGGACAGTGCTAGCAAAGGGAAGATCGCGGCCGATTCCTACAGGAACTCGTTAGAGAATGCAGATCTTGATATTTTGGACCCGGACCTGAAGCAATTGGAATCAATACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.72

Weight (kDa)

5.7

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26340 AT2G26340
fragaria_vesca FvH4_2g30980 FvH4_2g30980 FvH4_2g30980 FvH4_2g30980
malus_domestica MD08G1071400.v1.1 MD15G1049800.v1.1
prunus_persica Prupe.1G404100_v2.0.a1
pyrus_communis pycom08g05930
rosa_chinensis RchiOBHm_Chr6g0311811
rosa_laevigata RLG00000010372
rosa_multiflora Rmu_sc0002888.1_g000044
rosa_roxburghii Rroxscaffold_7G00157290
rosa_samantha Rh6AG507200 Rh6BG518200 Rh6CG523700 Rh6DG509500
rosa_wichuraiana Rw6G044130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 10
AccII CGCG 1 cut(s) 179
AciI CCGC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 1 cut(s) 12
AluBI AGCT 2 cut(s) 76, 104
AluI AGCT 2 cut(s) 76, 104
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 180
AseI ATTAAT 1 cut(s) 132
Asp718I GGTACC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 229, 235
AsuC2I CCSGG 2 cut(s) 25, 233
AsuNHI GCTAGC 1 cut(s) 161
AvaII GGWCC 2 cut(s) 229, 235
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 48
BcnI CCSGG 2 cut(s) 25, 233
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 190
BfuI GTATCC 1 cut(s) 48
BglII AGATCT 1 cut(s) 214
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 25, 233
Bme18I GGWCC 2 cut(s) 229, 235
BmgT120I GGNCC 2 cut(s) 229, 235
BmiI GGNNCC 2 cut(s) 12, 231
BmrFI CCNGG 2 cut(s) 25, 233
BmsI GCATC 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 165
BpuMI CCSGG 2 cut(s) 25, 233
BsaWI WCCGGW 2 cut(s) 106, 151
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 56
BseX3I CGGCCG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 4 cut(s) 25, 107, 152, 233
BslFI GGGAC 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 174, 214
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 12, 231
BspOI GCTAGC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 56
BssMI GATC 2 cut(s) 174, 214
Bst4CI ACNGT 3 cut(s) 21, 158, 261
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 1 cut(s) 6
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 2 cut(s) 177, 217
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 174, 214
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 23, 231
BstSFI CTRYAG 1 cut(s) 190
BstUI CGCG 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 180
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 17, 163
Cac8I GCNNGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 229, 235
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 37
CviJI RGCY 3 cut(s) 76, 104, 182
CviKI_1 RGCY 3 cut(s) 76, 104, 182
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 176, 216
DpnII GATC 2 cut(s) 174, 214
EaeI YGGCCR 1 cut(s) 180
EagI CGGCCG 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 104
EclXI CGGCCG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 229, 235
Eco52I CGGCCG 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 1 cut(s) 40
FaiI YATR 3 cut(s) 38, 80, 119
FaqI GGGAC 1 cut(s) 7
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 182
HapII CCGG 4 cut(s) 25, 107, 152, 233
Hin1II CATG 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 185, 251
HpaII CCGG 4 cut(s) 25, 107, 152, 233
Hpy188III TCNNGA 2 cut(s) 47, 218
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 3 cut(s) 21, 158, 261
HpyCH4V TGCA 2 cut(s) 149, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 40
KpnI GGTACC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 174, 214
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 32, 37, 38, 120, 165, 178, 246, 251
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 162
MalI GATC 2 cut(s) 176, 216
MboI GATC 2 cut(s) 174, 214
MboII GAAGA 2 cut(s) 35, 184
MfeI CAATTG 1 cut(s) 245
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 1 cut(s) 245
MnlI CCTC 1 cut(s) 84
MseI TTAA 1 cut(s) 132
MspI CCGG 4 cut(s) 25, 107, 152, 233
MspR9I CCNGG 2 cut(s) 25, 233
MunI CAATTG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 214
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 2 cut(s) 25, 233
NdeII GATC 2 cut(s) 174, 214
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 12, 231
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 185, 251
PkrI GCNGC 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 12, 231
PspPI GGNCC 2 cut(s) 229, 235
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SacI GAGCTC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 174, 214
Sau96I GGNCC 2 cut(s) 229, 235
ScrFI CCNGG 2 cut(s) 25, 233
SduI GDGCHC 1 cut(s) 106
SetI ASST 4 cut(s) 12, 78, 106, 240
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 190
SinI GGWCC 2 cut(s) 229, 235
Sse9I AATT 1 cut(s) 245
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 23, 231
TaaI ACNGT 3 cut(s) 21, 158, 261
TasI AATT 1 cut(s) 245
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 185, 251
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 24, 163
TspDTI ATGAA 2 cut(s) 111, 134
TspRI CASTG 2 cut(s) 24, 163
VpaK11BI GGWCC 2 cut(s) 229, 235
VspI ATTAAT 1 cut(s) 132
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.