pycom08g08240

CYPRO4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0014939
Physical Location & Seq
Forward (+)
6627588 .. 6629051
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08240.2

Sequence Viewer

Length: 405 bp
ATGGGAAATAGAATTTCAGCTCCAAGACTGCTGAAGCTGACTCCCCTGGATTCACATCTGGCGGGCACAAATAACAAGTTTCGTAACGCTCAGTTTTCGTGGGTCACAGAGAATGGGAAGCAGGAGCGTCATCTGGTTGCTACTGTGGGCAAATTTAGTGTGGTTTGGAACTTTCAACAGGTGAAGGATGGCTCGCATGAGTGCTACCGCAATCAGCAGGGCTTGAAGAGCTGCTACTGCTACAAGATAGTCCCTAAGGACGACTCCATTGTCGACAGTCGCTTCATGCATGACAAATTTGCAGTTACCGACTCACCTGAGGCTCCACTTGTGATTGCAACCCCTCTCAAAGTCAGCTCCTTCAGCATATCCAGTACTAGTAGACAATTGTACTCGGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VID27

Protein Analysis

135

Amino Acids

15.16

Weight (kDa)

9.24

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014939)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33400
fragaria_vesca FvH4_2g34470
malus_domestica MD08G1101800.v1.1 MD15G1083300.v1.1
prunus_persica Prupe.1G435800_v2.0.a1
pyrus_communis pycom08g08230 pycom08g08240 pycom15g07780
rosa_chinensis RchiOBHm_Chr6g0307901
rosa_laevigata RLG00000010688
rosa_rugosa Rorug06G0361500
rosa_samantha Rh6AG470600 Rh6BG481600 Rh6CG487000 Rh6DG473100
rosa_wichuraiana Rw6G041090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AccI GTMKAC 2 cut(s) 273, 382
AciI CCGC 2 cut(s) 62, 208
AcsI RAATTY 3 cut(s) 12, 152, 296
AcuI CTGAAG 2 cut(s) 53, 346
AfaI GTAC 2 cut(s) 376, 392
AgsI TTSAA 2 cut(s) 176, 226
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 4 cut(s) 20, 37, 231, 357
AluI AGCT 4 cut(s) 20, 37, 231, 357
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 3 cut(s) 12, 152, 296
AsuHPI GGTGA 2 cut(s) 193, 306
AxyI CCTNAGG 2 cut(s) 255, 318
BaeGI GKGCMC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 47
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 1 cut(s) 378
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 372
Bse21I CCTNAGG 2 cut(s) 255, 318
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 193
BseJI GATNNNNATC 1 cut(s) 54
BseMII CTCAG 2 cut(s) 104, 309
BseNI ACTGG 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 218
BslFI GGGAC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 68
BspACI CCGC 2 cut(s) 62, 208
BspCNI CTCAG 2 cut(s) 103, 310
BspLI GGNNCC 1 cut(s) 324
BspQI GCTCTTC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 145, 278
Bst6I CTCTTC 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 64, 194
BstDEI CTNAG 3 cut(s) 90, 255, 318
BstF5I GGATG 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 228, 237, 363
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 218
Bsu36I CCTNAGG 2 cut(s) 255, 318
BtsCI GGATG 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 64, 194
CseI GACGC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 375, 391
CviAII CATG 3 cut(s) 197, 286, 290
CviJI RGCY 7 cut(s) 20, 37, 192, 222, 231, 323, 357
CviKI_1 RGCY 7 cut(s) 20, 37, 192, 222, 231, 323, 357
CviQI GTAC 2 cut(s) 375, 391
DdeI CTNAG 3 cut(s) 90, 255, 318
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco57I CTGAAG 2 cut(s) 53, 346
Eco81I CCTNAGG 2 cut(s) 255, 318
EcoRII CCWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 291
FaeI CATG 3 cut(s) 200, 289, 293
FaiI YATR 4 cut(s) 198, 287, 291, 368
FaqI GGGAC 1 cut(s) 236
FatI CATG 3 cut(s) 196, 285, 289
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 2 cut(s) 273, 382
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 378
GluI GCNGC 1 cut(s) 232
HgaI GACGC 1 cut(s) 116
Hin1II CATG 3 cut(s) 200, 289, 293
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 4 cut(s) 40, 50, 263, 311
HphI GGTGA 2 cut(s) 193, 306
Hpy166II GTNNAC 2 cut(s) 274, 383
Hpy188I TCNGA 1 cut(s) 397
Hpy8I GTNNAC 2 cut(s) 274, 383
HpyAV CCTTC 2 cut(s) 178, 370
HpyCH4III ACNGT 2 cut(s) 145, 278
HpyCH4V TGCA 3 cut(s) 289, 302, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 237, 363
HpyF3I CTNAG 3 cut(s) 90, 255, 318
Hsp92II CATG 3 cut(s) 200, 289, 293
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 4 cut(s) 25, 124, 328, 362
LpnPI CCDG 9 cut(s) 32, 44, 59, 107, 119, 164, 203, 330, 385
Lsp1109I GCAGC 1 cut(s) 218
MaeI CTAG 1 cut(s) 378
MaeIII GTNAC 3 cut(s) 83, 103, 304
MboII GAAGA 1 cut(s) 238
MfeI CAATTG 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 4 cut(s) 12, 152, 296, 386
MlyI GAGTC 3 cut(s) 34, 257, 305
MnlI CCTC 2 cut(s) 313, 354
Mph1103I ATGCAT 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 228, 237, 363
NlaIII CATG 3 cut(s) 200, 289, 293
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 291
PciSI GCTCTTC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 3 cut(s) 34, 257, 305
PpsI GAGTC 3 cut(s) 34, 257, 305
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 324
RsaI GTAC 2 cut(s) 376, 392
RsaNI GTAC 2 cut(s) 375, 391
SalI GTCGAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 221
SatI GCNGC 1 cut(s) 232
ScaI AGTACT 1 cut(s) 376
SchI GAGTC 3 cut(s) 34, 257, 305
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 68
SetI ASST 6 cut(s) 22, 39, 183, 233, 319, 359
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 4 cut(s) 12, 152, 296, 386
SsiI CCGC 2 cut(s) 62, 208
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 145, 278
TaqI TCGA 1 cut(s) 273
TasI AATT 4 cut(s) 12, 152, 296, 386
TatI WGTACW 2 cut(s) 374, 390
TfiI GAWTC 1 cut(s) 50
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 274
XapI RAATTY 3 cut(s) 12, 152, 296
XmiI GTMKAC 2 cut(s) 273, 382
XspI CTAG 1 cut(s) 378
ZrmI AGTACT 1 cut(s) 376
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.