pycom08g09670

ER membrane protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011093
Physical Location & Seq
Forward (+)
8028205 .. 8030157
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09670.2

Sequence Viewer

Length: 1134 bp
ATGGGCATGGCGGTTCGAGGTTTCGTGCTTCTTCTTCTGTTCTTATCAGCTGCAAATCTCAGTCTTTCGCTCTACGAAGATCAAGTCGGTCTCATGGATTGGCACCAGCAGTACATAGGGAAAGTAAAGGAAGCAGTGTTCCATACTCCGAAAAGCGGGCGGAGGCGGGTTGTGGTGTCGACTGAGGAGAATGTTATATCATCGCTTGATCTTCGGCATGGGGGGATAATTTGGAGACGTGTTCTTGGGAGCAATGATGCTATAGACGGAATCGACATAGCATTGGGAAAATATGTCGTTACCCTTTCGTCAGACGGAAGTATTTTAAGAGCATGGAACCTTCCTGATGGTCAGATGGTTTGGGAATCTTTTCTAGAGGGCTTAGTGTCCTCTAAATCTTTACTAAGTGTCCCGACAAGTTTGAAAGTTGACAAGGGAAATTTGATCCTTGTTTTTGGTAAAGGGTCTCTACATGCTATTTCTAGCATTGATGGTGAGGTTCTTTGGGAAAAGGATTTTGCAGCTGAAAGTATAGAGGTTCAACAGATTATTCAGCCTCTGGGCGGTGATGTAGCTTATGTACTCGGATTTGTTGGTTCTTCCCAGTTTGATGCATATCAAATCAATGTTAGGAACGGAGAGTTGCTGAAGCACAGCAGTGCACCCTTTTCGGGTGGCTTTTCAGGGGAAGCACTGCTTGTTTCTAGTGAAATTCTAGTGACATTGGATTCCACAAGGTCAAAGCTGGTAATTATAAGCTTTCAGGATGGAGAAATTAACTATCAACAGACACCCATATCTGATATTTTTGGGGATTCTCTTGGAACACCAGTGCTGTTACCTTCAAAACTTCCAGGATTGTTTTCTGTAAAACTTAATGGGGCTGTCATATTCATAAGAGTGACTGGTGAAGGAAAGTTGGAGGTGCTGGATAAAGTAAATGATGTGGCGGCTATCAGTGATGCAATCTCACTTTCAGACGGGCAACAGGCTTTTGGACGAGTCCAACATGGAGATGGTAAGATCGATCTTACAGTGCATGCTAAAAGCCTACTCATGACTCAAGCACCGATCTGCTCAAAGAAAGTATTGTTGTGGACAATCAGAGGGGGGTTGTTCATAAGGTTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1620 PQQ_2

Protein Analysis

378

Amino Acids

40.76

Weight (kDa)

5.69

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11560
fragaria_vesca FvH4_2g35850
malus_domestica MD08G1115900.v1.1 MD15G1095600.v1.1
prunus_persica Prupe.1G450600_v2.0.a1 Prupe.1G450600_v2.0.a1
pyrus_communis pycom08g09670 pycom08g09680 pycom15g08790
rosa_chinensis RchiOBHm_Chr6g0305971
rosa_laevigata RLG00000010841
rosa_multiflora Rmu_co8311943.1_g000001 Rmu_sc0001809.1_g000056
rosa_roxburghii Rroxscaffold_7G00162180
rosa_rugosa Rorug06G0345700
rosa_samantha Rh6AG457600 Rh6BG443500 Rh6CG471700 Rh6DG458100
rosa_wichuraiana Rw6G039920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 179
AciI CCGC 6 cut(s) 11, 156, 160, 166, 564, 950
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 2 cut(s) 439, 711
AcuI CTGAAG 1 cut(s) 668
AfaI GTAC 2 cut(s) 113, 582
AfiI CCNNNNNNNGG 3 cut(s) 155, 563, 671
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 424, 542, 846
AjiI CACGTC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 853
AleI CACNNNNGTG 1 cut(s) 657
AloI GAACNNNNNNTCC 2 cut(s) 122, 154
AluBI AGCT 5 cut(s) 50, 524, 575, 745, 759
AluI AGCT 5 cut(s) 50, 524, 575, 745, 759
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 3 cut(s) 95, 229, 471
Alw44I GTGCAC 1 cut(s) 660
AlwI GGATC 1 cut(s) 439
AlwNI CAGNNNCTG 1 cut(s) 559
ApaLI GTGCAC 1 cut(s) 660
ApeKI GCWGC 2 cut(s) 50, 521
ApoI RAATTY 2 cut(s) 439, 711
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
Asp700I GAANNNNTTC 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 506, 578, 920
BaeGI GKGCMC 1 cut(s) 664
BanI GGYRCC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 2 cut(s) 37, 533
BccI CCATC 5 cut(s) 341, 349, 485, 761, 1010
BcgI CGANNNNNNTGC 2 cut(s) 651, 685
BciT130I CCWGG 1 cut(s) 855
BcoDI GTCTC 3 cut(s) 95, 229, 471
BfaI CTAG 4 cut(s) 374, 483, 705, 716
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 3 cut(s) 51, 522, 951
BlsI GCNGC 3 cut(s) 52, 523, 952
Bme1390I CCNGG 1 cut(s) 855
BmgBI CACGTC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 104, 338
BmrFI CCNGG 1 cut(s) 855
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 3 cut(s) 247, 601, 952
BmuI ACTGGG 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 1047
Bsa29I ATCGAT 1 cut(s) 1026
BsaBI GATNNNNATC 1 cut(s) 615
BsaI GGTCTC 2 cut(s) 95, 471
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 563, 671
Bse1I ACTGG 3 cut(s) 604, 830, 910
Bse3DI GCAATG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 1 cut(s) 855
BseCI ATCGAT 1 cut(s) 1026
BseGI GGATG 1 cut(s) 772
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 3 cut(s) 155, 563, 671
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 73, 174
BseNI ACTGG 3 cut(s) 604, 830, 910
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 664
BseXI GCAGC 2 cut(s) 37, 533
BshNI GGYRCC 1 cut(s) 102
BshVI ATCGAT 1 cut(s) 1026
BsiHKAI GWGCWC 1 cut(s) 664
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 3 cut(s) 155, 563, 671
BsmAI GTCTC 3 cut(s) 95, 229, 471
BsmBI CGTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 395
Bso31I GGTCTC 2 cut(s) 95, 471
Bsp1286I GDGCHC 1 cut(s) 664
Bsp143I GATC 6 cut(s) 79, 208, 444, 1023, 1027, 1071
BspACI CCGC 6 cut(s) 11, 156, 160, 166, 564, 950
BspCNI CTCAG 2 cut(s) 72, 175
BspDI ATCGAT 1 cut(s) 1026
BspHI TCATGA 1 cut(s) 1056
BspLI GGNNCC 2 cut(s) 104, 338
BspPI GGATC 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 102
BspTNI GGTCTC 2 cut(s) 95, 471
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 3 cut(s) 604, 830, 910
BssMI GATC 6 cut(s) 79, 208, 444, 1023, 1027, 1071
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 1 cut(s) 1036
BstC8I GCNNGC 2 cut(s) 158, 1041
BstDEI CTNAG 4 cut(s) 59, 183, 382, 404
BstF5I GGATG 1 cut(s) 772
BstKTI GATC 6 cut(s) 82, 211, 447, 1026, 1030, 1074
BstMAI GTCTC 3 cut(s) 95, 229, 471
BstMBI GATC 6 cut(s) 79, 208, 444, 1023, 1027, 1071
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 2 cut(s) 476, 1043
BstSCI CCNGG 1 cut(s) 853
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 664
BstV1I GCAGC 2 cut(s) 37, 533
Bsu15I ATCGAT 1 cut(s) 1026
BsuTUI ATCGAT 1 cut(s) 1026
BtgZI GCGATG 1 cut(s) 186
BtrI CACGTC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 772
BtsI GCAGTG 3 cut(s) 141, 664, 692
BtsIMutI CAGTG 6 cut(s) 141, 664, 692, 837, 964, 1041
Cac8I GCNNGC 2 cut(s) 158, 1041
CaiI CAGNNNCTG 1 cut(s) 559
CciI TCATGA 1 cut(s) 1056
ClaI ATCGAT 1 cut(s) 1026
Csp6I GTAC 2 cut(s) 112, 581
CviAII CATG 8 cut(s) 7, 94, 218, 333, 473, 1010, 1040, 1057
CviQI GTAC 2 cut(s) 112, 581
DdeI CTNAG 4 cut(s) 59, 183, 382, 404
DpnI GATC 6 cut(s) 81, 210, 446, 1025, 1029, 1073
DpnII GATC 6 cut(s) 79, 208, 444, 1023, 1027, 1071
EciI GGCGGA 1 cut(s) 175
Eco31I GGTCTC 2 cut(s) 95, 471
Eco57I CTGAAG 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 853
EcoT22I ATGCAT 1 cut(s) 616
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 8 cut(s) 10, 97, 221, 336, 476, 1013, 1043, 1060
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FaqI GGGAC 1 cut(s) 395
FatI CATG 8 cut(s) 6, 93, 217, 332, 472, 1009, 1039, 1056
FauI CCCGC 2 cut(s) 149, 159
FblI GTMKAC 1 cut(s) 179
Fnu4HI GCNGC 3 cut(s) 51, 522, 951
FokI GGATG 1 cut(s) 779
Fsp4HI GCNGC 3 cut(s) 51, 522, 951
FspBI CTAG 4 cut(s) 374, 483, 705, 716
GluI GCNGC 3 cut(s) 51, 522, 951
Hin1II CATG 8 cut(s) 10, 97, 221, 336, 476, 1013, 1043, 1060
HincII GTYRAC 2 cut(s) 180, 430
HindII GTYRAC 2 cut(s) 180, 430
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 6 cut(s) 270, 365, 728, 815, 1002, 1060
HphI GGTGA 3 cut(s) 506, 578, 920
Hpy166II GTNNAC 4 cut(s) 180, 430, 662, 1098
Hpy188I TCNGA 7 cut(s) 150, 313, 354, 587, 802, 979, 1106
Hpy188III TCNNGA 5 cut(s) 344, 374, 412, 764, 1057
Hpy8I GTNNAC 4 cut(s) 180, 430, 662, 1098
HpyAV CCTTC 3 cut(s) 350, 852, 905
HpyCH4III ACNGT 1 cut(s) 1036
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 6 cut(s) 53, 521, 614, 662, 965, 1039
HpyF3I CTNAG 4 cut(s) 59, 183, 382, 404
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 8 cut(s) 10, 97, 221, 336, 476, 1013, 1043, 1060
Kzo9I GATC 6 cut(s) 79, 208, 444, 1023, 1027, 1071
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 2 cut(s) 37, 533
LweI GCATC 3 cut(s) 247, 601, 952
MaeI CTAG 4 cut(s) 374, 483, 705, 716
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 4 cut(s) 298, 718, 837, 901
MalI GATC 6 cut(s) 81, 210, 446, 1025, 1029, 1073
MboI GATC 6 cut(s) 79, 208, 444, 1023, 1027, 1071
MboII GAAGA 5 cut(s) 23, 26, 89, 203, 591
MhlI GDGCHC 1 cut(s) 664
MluCI AATT 5 cut(s) 228, 439, 711, 750, 774
MlyI GAGTC 2 cut(s) 1011, 1054
MmeI TCCRAC 2 cut(s) 900, 1030
Mph1103I ATGCAT 1 cut(s) 616
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 3 cut(s) 326, 777, 876
MslI CAYNNNNRTG 3 cut(s) 657, 899, 1014
MspA1I CMGCKG 2 cut(s) 50, 524
MspR9I CCNGG 1 cut(s) 855
MvaI CCWGG 1 cut(s) 855
NdeII GATC 6 cut(s) 79, 208, 444, 1023, 1027, 1071
NlaIII CATG 8 cut(s) 10, 97, 221, 336, 476, 1013, 1043, 1060
NlaIV GGNNCC 2 cut(s) 104, 338
NmuCI GTSAC 2 cut(s) 718, 901
NsiI ATGCAT 1 cut(s) 616
NspI RCATGY 2 cut(s) 476, 1043
OliI CACNNNNGTG 1 cut(s) 657
PaeI GCATGC 1 cut(s) 1043
PagI TCATGA 1 cut(s) 1056
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 4 cut(s) 270, 365, 728, 815
PfoI TCCNGGA 1 cut(s) 853
PkrI GCNGC 3 cut(s) 52, 523, 952
PleI GAGTC 2 cut(s) 1010, 1054
PpsI GAGTC 2 cut(s) 1010, 1054
PsiI TTATAA 1 cut(s) 755
Psp6I CCWGG 1 cut(s) 853
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 2 cut(s) 104, 338
PstNI CAGNNNCTG 1 cut(s) 559
PvuII CAGCTG 2 cut(s) 50, 524
RsaI GTAC 2 cut(s) 113, 582
RsaNI GTAC 2 cut(s) 112, 581
RseI CAYNNNNRTG 3 cut(s) 657, 899, 1014
SalI GTCGAC 1 cut(s) 178
SaqAI TTAA 3 cut(s) 326, 777, 876
SatI GCNGC 3 cut(s) 51, 522, 951
Sau3AI GATC 6 cut(s) 79, 208, 444, 1023, 1027, 1071
SchI GAGTC 2 cut(s) 1011, 1054
ScrFI CCNGG 1 cut(s) 855
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 3 cut(s) 247, 601, 952
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 3 cut(s) 657, 899, 1014
SmlI CTYRAG 1 cut(s) 1062
SmoI CTYRAG 1 cut(s) 1062
SphI GCATGC 1 cut(s) 1043
Sse9I AATT 5 cut(s) 228, 439, 711, 750, 774
SsiI CCGC 6 cut(s) 11, 156, 160, 166, 564, 950
SspMI CTAG 4 cut(s) 374, 483, 705, 716
StyD4I CCNGG 1 cut(s) 853
TaaI ACNGT 1 cut(s) 1036
TaiI ACGT 1 cut(s) 241
TaqI TCGA 4 cut(s) 16, 179, 273, 1026
TaqII GACCGA 1 cut(s) 77
TasI AATT 5 cut(s) 228, 439, 711, 750, 774
TatI WGTACW 2 cut(s) 111, 580
TauI GCSGC 1 cut(s) 953
TfiI GAWTC 4 cut(s) 270, 365, 728, 815
Tru1I TTAA 3 cut(s) 326, 777, 876
Tru9I TTAA 3 cut(s) 326, 777, 876
TscAI CASTG 6 cut(s) 141, 664, 699, 837, 964, 1041
TseFI GTSAC 2 cut(s) 718, 901
TseI GCWGC 2 cut(s) 50, 521
Tsp45I GTSAC 2 cut(s) 718, 901
TspDTI ATGAA 3 cut(s) 883, 1108, 1119
TspGWI ACGGA 3 cut(s) 282, 330, 651
TspRI CASTG 6 cut(s) 141, 664, 699, 837, 964, 1041
VneI GTGCAC 1 cut(s) 660
XapI RAATTY 2 cut(s) 439, 711
XbaI TCTAGA 1 cut(s) 373
XceI RCATGY 2 cut(s) 476, 1043
XcmI CCANNNNNNNNNTGG 1 cut(s) 1013
XmiI GTMKAC 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 4 cut(s) 374, 483, 705, 716
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.