Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011884

Physical Location & Seq

Genomic Coordinates Reverse (-)

8595723 .. 8596748

Gene Structure 1026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATGAATTCATGTCCAACTATCTTTGTAATTCTCATGTTTTTAGTCATCTTGAGCTCTGGGGGTGTTCATGTGCTATCTGTTCGTACACTTTCGACTGATCCTTGCAACCCCAAAGCCCAACAGGACCCACAAAATCTCATTTCTGACCAACTAACCGTACTCATCAATGGCTACTCCGAGTCTCGCATCCCTCTCCTTCAATCCATCGTCTCCACGTATGCAGCCTCGTCTTTGGTTTCATACATTCTTGTGCTTTGGGGAAACCCTTCCACCCCATCCCAGACCTTGTCCCAACTGGCTCGCAATCTCACAGACTCCTCCTTTGGATTCAGTGGCATCTCTGTAATCCGCCAAGCATCTGACAGCCTCAATAATCGGTTCCTCCCCAGGCCCGAAATTAAGACCCGAGCAGTCTTGGTCTGTGATGATGATGTTGAAGTTGATCCGAAATCCTTCGAATTTGCATTTAAAATGTGGCGAACAAACCCGGATCGGCTGGTAGGGTTCTTTGTCAGGTCACACGACATAGATTTGTCAAGGAAAGAGTGGATCTACACCGTTCATCCAGACAAGTACTCTATCATGCTCACCAAGTTTATGCTTTTTAAAAGCAAGTATTTGTTTCAGTACAGCTGTGCAGGAGGACCGGTGATGGCCAGCATGAGGAAGATCGTGGATAGGATGCAAAACTGCGAGGACATATTGATGAATTTTGTGGCAGCGGATGAGGTTAATGCAGGGCCTATATTGGTCGGAGCCGAGAGGGTTAGGGATTGGGGGGATGCGCGCAATGATCATGATGATGGTGATGCACGACGAGGATTGATTGGGGAGGTTGCACAGGTGGGTTTGAGTAGTAGGAAAACGAAGCATAGGAAGAGGAGAGGGGAGTGTATAGGTGAGTTTCATAGGGTGTTGGGGAGAATGTCTTTGAGGTTCAGTTATGGGAAGGTTGTCAACTCCGTTGGCGAACAAGGTCTGTGTCAAAAAGGAGGGAAATTGGTGTTTTGTGATCAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006029 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015012 GO:0016020 GO:0016740 GO:0016757 GO:0019538 GO:0030166 GO:0030201 GO:0030307 GO:0034645 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0065007 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

342

Amino Acids

38.18

Weight (kDa)

8.86

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	52 - 321	6.7e-74	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80290 AT1G80290
fragaria_vesca	FvH4_2g36410 FvH4_2g36410
malus_domestica	MD08G1123400.v1.1 MD15G1102400.v1.1
prunus_persica	Prupe.1G455400_v2.0.a1
pyrus_communis	pycom08g10260
rosa_chinensis	RchiOBHm_Chr6g0305491
rosa_laevigata	RLG00000010887
rosa_multiflora	Rmu_co8349055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162760
rosa_rugosa	Rorug06G0340500 Rorug06G0340600.1
rosa_samantha	Rh6AG452700 Rh6BG449100 Rh6CG466400 Rh6DG453100
rosa_wichuraiana	Rw6G039450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	790
AciI	CCGC	2 cut(s)	352, 725
AclWI	GGATC	4 cut(s)	95, 440, 501, 560
AcoI	YGGCCR	1 cut(s)	657
AcsI	RAATTY	3 cut(s)	7, 461, 712
AfaI	GTAC	4 cut(s)	88, 162, 578, 632
AfiI	CCNNNNNNNGG	1 cut(s)	666
AgeI	ACCGGT	1 cut(s)	649
AgsI	TTSAA	2 cut(s)	203, 440
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	57, 636
AluI	AGCT	2 cut(s)	57, 636
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	2 cut(s)	189, 217
AlwI	GGATC	4 cut(s)	95, 440, 501, 560
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	3 cut(s)	392, 657, 743
ApeKI	GCWGC	2 cut(s)	224, 722
ApoI	RAATTY	3 cut(s)	7, 461, 712
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AsiGI	ACCGGT	1 cut(s)	649
Asp700I	GAANNNNTTC	2 cut(s)	268, 455
AspLEI	GCGC	2 cut(s)	790, 792
AspS9I	GGNCC	4 cut(s)	127, 393, 647, 743
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	4 cut(s)	583, 664, 821, 914
AsuII	TTCGAA	1 cut(s)	459
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	2 cut(s)	127, 647
BalI	TGGCCA	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	236, 734
BccI	CCATC	4 cut(s)	215, 286, 649, 800
BciT130I	CCWGG	1 cut(s)	391
BclI	TGATCA	2 cut(s)	796, 1015
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	189, 217
BisI	GCNGC	2 cut(s)	225, 723
BlsI	GCNGC	2 cut(s)	226, 724
BmcAI	AGTACT	1 cut(s)	578
Bme1390I	CCNGG	2 cut(s)	391, 491
Bme18I	GGWCC	2 cut(s)	127, 647
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	4 cut(s)	127, 393, 647, 743
BmiI	GGNNCC	3 cut(s)	129, 383, 760
BmrFI	CCNGG	2 cut(s)	391, 491
BmsI	GCATC	6 cut(s)	198, 348, 368, 675, 775, 802
Bpu14I	TTCGAA	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	491
BsaAI	YACGTR	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	649
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse118I	RCCGGY	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	799
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	6 cut(s)	189, 278, 565, 690, 733, 790
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMI	GCAATG	1 cut(s)	799
BseNI	ACTGG	1 cut(s)	303
BsePI	GCGCGC	1 cut(s)	788
BseRI	GAGGAG	2 cut(s)	310, 898
BseXI	GCAGC	2 cut(s)	236, 734
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	1 cut(s)	790
BshFI	GGCC	3 cut(s)	394, 659, 745
BshTI	ACCGGT	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	2 cut(s)	491, 650
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmAI	GTCTC	2 cut(s)	189, 217
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	394, 659, 745
BsoBI	CYCGRG	1 cut(s)	408
Bsp119I	TTCGAA	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	7 cut(s)	100, 445, 493, 552, 672, 796, 1015
BspACI	CCGC	2 cut(s)	352, 725
BspANI	GGCC	3 cut(s)	394, 659, 745
BspFNI	CGCG	1 cut(s)	790
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	3 cut(s)	129, 383, 760
BspPI	GGATC	4 cut(s)	95, 440, 501, 560
BspT104I	TTCGAA	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	799
BsrFI	RCCGGY	1 cut(s)	649
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	1 cut(s)	389
BssHII	GCGCGC	1 cut(s)	788
BssMI	GATC	7 cut(s)	100, 445, 493, 552, 672, 796, 1015
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	160, 562
Bst6I	CTCTTC	1 cut(s)	875
BstBAI	YACGTR	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	3 cut(s)	304, 661, 790
BstF5I	GGATG	6 cut(s)	189, 278, 565, 690, 733, 790
BstFNI	CGCG	1 cut(s)	790
BstHHI	GCGC	2 cut(s)	790, 792
BstKTI	GATC	7 cut(s)	103, 448, 496, 555, 675, 799, 1018
BstMAI	GTCTC	2 cut(s)	189, 217
BstMBI	GATC	7 cut(s)	100, 445, 493, 552, 672, 796, 1015
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	389, 489
BstUI	CGCG	1 cut(s)	790
BstV1I	GCAGC	2 cut(s)	236, 734
BstX2I	RGATCY	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	552
BsuRI	GGCC	3 cut(s)	394, 659, 745
BtsCI	GGATG	6 cut(s)	189, 278, 565, 690, 733, 790
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	3 cut(s)	304, 661, 790
CciI	TCATGA	1 cut(s)	799
CfoI	GCGC	2 cut(s)	790, 792
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	4 cut(s)	127, 393, 647, 743
Csp6I	GTAC	4 cut(s)	87, 161, 577, 631
CspAI	ACCGGT	1 cut(s)	649
CviAII	CATG	6 cut(s)	12, 37, 71, 586, 664, 800
CviQI	GTAC	4 cut(s)	87, 161, 577, 631
DpnI	GATC	7 cut(s)	102, 447, 495, 554, 674, 798, 1017
DpnII	GATC	7 cut(s)	100, 445, 493, 552, 672, 796, 1015
DraI	TTTAAA	2 cut(s)	472, 610
EaeI	YGGCCR	1 cut(s)	657
Eam1104I	CTCTTC	1 cut(s)	875
EarI	CTCTTC	1 cut(s)	875
EciI	GGCGGA	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	127, 647
Eco53kI	GAGCTC	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	127, 743
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	59
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	6 cut(s)	15, 40, 74, 589, 667, 803
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	6 cut(s)	11, 36, 70, 585, 663, 799
FbaI	TGATCA	2 cut(s)	796, 1015
Fnu4HI	GCNGC	2 cut(s)	225, 723
FokI	GGATG	6 cut(s)	176, 265, 552, 697, 740, 797
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	225, 723
GlaI	GCGC	2 cut(s)	789, 791
GluI	GCNGC	2 cut(s)	225, 723
HaeIII	GGCC	3 cut(s)	394, 659, 745
HapII	CCGG	2 cut(s)	491, 650
HhaI	GCGC	2 cut(s)	790, 792
Hin1II	CATG	6 cut(s)	15, 40, 74, 589, 667, 803
Hin6I	GCGC	2 cut(s)	788, 790
HinP1I	GCGC	2 cut(s)	788, 790
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HinfI	GANTC	3 cut(s)	182, 317, 330
HpaII	CCGG	2 cut(s)	491, 650
HphI	GGTGA	4 cut(s)	583, 664, 821, 914
Hpy166II	GTNNAC	2 cut(s)	89, 961
Hpy188I	TCNGA	5 cut(s)	148, 181, 364, 450, 758
Hpy188III	TCNNGA	3 cut(s)	52, 569, 800
Hpy8I	GTNNAC	2 cut(s)	89, 961
Hpy99I	CGWCG	1 cut(s)	822
HpyAV	CCTTC	4 cut(s)	209, 279, 466, 946
HpyCH4III	ACNGT	2 cut(s)	160, 562
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	8 cut(s)	108, 224, 467, 641, 688, 740, 815, 842
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	6 cut(s)	15, 40, 74, 589, 667, 803
HspAI	GCGC	2 cut(s)	788, 790
Ksp22I	TGATCA	2 cut(s)	796, 1015
Kzo9I	GATC	7 cut(s)	100, 445, 493, 552, 672, 796, 1015
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	2 cut(s)	236, 734
LweI	GCATC	6 cut(s)	198, 348, 368, 675, 775, 802
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	7 cut(s)	102, 447, 495, 554, 674, 798, 1017
MboI	GATC	7 cut(s)	100, 445, 493, 552, 672, 796, 1015
MboII	GAAGA	2 cut(s)	682, 892
MflI	RGATCY	1 cut(s)	552
MhlI	GDGCHC	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	659
MluCI	AATT	6 cut(s)	7, 30, 399, 461, 712, 1001
MluNI	TGGCCA	1 cut(s)	659
MlyI	GAGTC	2 cut(s)	191, 311
MmeI	TCCRAC	2 cut(s)	41, 736
Mox20I	TGGCCA	1 cut(s)	659
MroXI	GAANNNNTTC	2 cut(s)	268, 455
MscI	TGGCCA	1 cut(s)	659
MseI	TTAA	4 cut(s)	402, 471, 609, 735
MslI	CAYNNNNRTG	3 cut(s)	251, 707, 804
Msp20I	TGGCCA	1 cut(s)	659
MspA1I	CMGCKG	2 cut(s)	636, 725
MspI	CCGG	2 cut(s)	491, 650
MspR9I	CCNGG	2 cut(s)	391, 491
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	1 cut(s)	790
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	7 cut(s)	100, 445, 493, 552, 672, 796, 1015
NlaIII	CATG	6 cut(s)	15, 40, 74, 589, 667, 803
NlaIV	GGNNCC	3 cut(s)	129, 383, 760
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	1 cut(s)	519
NspV	TTCGAA	1 cut(s)	459
PagI	TCATGA	1 cut(s)	799
PauI	GCGCGC	1 cut(s)	788
PdmI	GAANNNNTTC	2 cut(s)	268, 455
PfeI	GAWTC	1 cut(s)	330
PflFI	GACNNNGTC	1 cut(s)	289
PinAI	ACCGGT	1 cut(s)	649
PkrI	GCNGC	2 cut(s)	226, 724
PleI	GAGTC	2 cut(s)	190, 311
PpsI	GAGTC	2 cut(s)	190, 311
Ppu21I	YACGTR	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	129, 383, 760
PspPI	GGNCC	4 cut(s)	127, 393, 647, 743
PspPPI	RGGWCCY	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	552
PsyI	GACNNNGTC	1 cut(s)	289
PteI	GCGCGC	1 cut(s)	788
PvuII	CAGCTG	1 cut(s)	636
RsaI	GTAC	4 cut(s)	88, 162, 578, 632
RsaNI	GTAC	4 cut(s)	87, 161, 577, 631
RseI	CAYNNNNRTG	3 cut(s)	251, 707, 804
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	4 cut(s)	402, 471, 609, 735
SatI	GCNGC	2 cut(s)	225, 723
Sau3AI	GATC	7 cut(s)	100, 445, 493, 552, 672, 796, 1015
Sau96I	GGNCC	4 cut(s)	127, 393, 647, 743
ScaI	AGTACT	1 cut(s)	578
SchI	GAGTC	2 cut(s)	191, 311
ScrFI	CCNGG	2 cut(s)	391, 491
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	6 cut(s)	198, 348, 368, 675, 775, 802
SfuI	TTCGAA	1 cut(s)	459
SinI	GGWCC	2 cut(s)	127, 647
SmiMI	CAYNNNNRTG	3 cut(s)	251, 707, 804
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	6 cut(s)	7, 30, 399, 461, 712, 1001
SsiI	CCGC	2 cut(s)	352, 725
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	389, 489
TaaI	ACNGT	2 cut(s)	160, 562
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	95, 459
TasI	AATT	6 cut(s)	7, 30, 399, 461, 712, 1001
TatI	WGTACW	2 cut(s)	576, 630
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	4 cut(s)	402, 471, 609, 735
Tru9I	TTAA	4 cut(s)	402, 471, 609, 735
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	2 cut(s)	224, 722
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	6 cut(s)	20, 59, 231, 554, 725, 899
TspGWI	ACGGA	1 cut(s)	955
TspRI	CASTG	1 cut(s)	340
Tth111I	GACNNNGTC	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	127, 647
XapI	RAATTY	3 cut(s)	7, 461, 712
XmnI	GAANNNNTTC	2 cut(s)	268, 455
ZrmI	AGTACT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.