Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0019754

Physical Location & Seq

Genomic Coordinates Reverse (-)

9726003 .. 9726453

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTTCCACTGTCATTGCTGCTGGGAACAAGGATGTCATTTCTTGTGCCCTTTCCCCCACATACAGCACATCACCAGAAATGACGACGTCATGACAGAAAATGAAATTGAGCACGAACTAGTTGCACAGGCAGAAAATGCATGGGCTCAGCGCGAATGGTCAATCCAGCATGTTTTGTTTCCATCAATGAGGCTCTTTTTAAAGCCACCAAATTCTATGGCCACAAACGGAACATTTGTACGGGTAGCTTCACTGGAGAAACTATACCGGATTTTCGAAAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

96

Amino Acids

11.36

Weight (kDa)

6.36

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlh1_C	PF16413	18 - 94	1.8e-16	DNA mismatch repair protein Mlh1 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019754)

Species	Orthologous Gene IDs
malus_domestica	MD14G1034100.v1.1
pyrus_communis	pycom08g11520
rosa_multiflora	Rmu_sc0003722.1_g000005 Rmu_sc0039398.1_g000001
rosa_samantha	Rh7AG388500 Rh7AG388600 Rh7CG407800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccII	CGCG	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	240
AhlI	ACTAGT	1 cut(s)	118
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	19
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	5
BseYI	CCCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	268
BsnI	GGCC	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1286I	GDGCHC	3 cut(s)	50, 114, 148
Bsp1720I	GCTNAGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	90
BspT104I	TTCGAA	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	258
BssNI	GRCGYC	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	50
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	7, 251
CciI	TCATGA	1 cut(s)	90
CfoI	GCGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	239
CspCI	CAANNNNNGTGG	1 cut(s)	31
CviAII	CATG	3 cut(s)	91, 141, 170
CviJI	RGCY	5 cut(s)	146, 193, 205, 221, 248
CviKI_1	RGCY	5 cut(s)	146, 193, 205, 221, 248
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	147
DraI	TTTAAA	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	3 cut(s)	94, 144, 173
FaiI	YATR	6 cut(s)	62, 92, 142, 171, 218, 265
FatI	CATG	3 cut(s)	90, 140, 169
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	19
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	268
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	94, 144, 173
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	125, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	94, 144, 173
HspAI	GCGC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	7, 88, 113, 179, 239, 281
Lsp1109I	GCAGC	1 cut(s)	5
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	87
MhlI	GDGCHC	3 cut(s)	50, 114, 148
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	2 cut(s)	105, 211
MluNI	TGGCCA	1 cut(s)	221
MnlI	CCTC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	137
NlaIII	CATG	3 cut(s)	94, 144, 173
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	276
PagI	TCATGA	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	21
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	1 cut(s)	19
SduI	GDGCHC	3 cut(s)	50, 114, 148
SetI	ASST	2 cut(s)	90, 250
SfuI	TTCGAA	1 cut(s)	276
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	2 cut(s)	105, 211
SspMI	CTAG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	276
TasI	AATT	2 cut(s)	105, 211
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	2 cut(s)	14, 258
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	14, 258
Tth111I	GACNNNGTC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	1 cut(s)	119
ZraI	GACGTC	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.