Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0019754

Physical Location & Seq

Genomic Coordinates Reverse (-)

50956138 .. 50959688

Gene Structure 3551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG388600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGACAGATATTTCAGGAGCAGACAGTTGAACCACCTTCATCCAGCCAAATGATTTCTAGCAAGGATTCAAATCGAAATCCTTTGGCATCTGGATCAAATTCACAAAAGGTTCCAGTGAATAAAATGGTCAGAACAGATTCATCGGATCCTGCTGGAAGGTTGCATATTTACTTGCACGCAGAGCCTCATGGCCATCTTGAAAAGAATACTAGCTTGACTGCTGTTAGATCGTCTGTTAGACAAAGAAGGAACCCAAAGGAAACAGCTGATCTGAGTAGCATTCAGGAGCCTATTGCTCAAATTGATAGCAATTGTCATTCTGGTATGCTAGACATTGTGAGAAACTGCACATACATTGGAATGGCAGATGACGTCTTTGCATTGCTTCAGCATGACACACACCTCTATCTTGCAAATGTAGTAAGCTTGAGCAAAGAGCTCATGTATCAGCAAGTTCTACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

155

Amino Acids

17.36

Weight (kDa)

7.06

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlh1_C	PF16413	92 - 155	4.3e-16	DNA mismatch repair protein Mlh1 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019754)

Species	Orthologous Gene IDs
malus_domestica	MD14G1034100.v1.1
pyrus_communis	pycom08g11520
rosa_multiflora	Rmu_sc0003722.1_g000005 Rmu_sc0039398.1_g000001
rosa_samantha	Rh7AG388500 Rh7AG388600 Rh7CG407800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
AclWI	GGATC	3 cut(s)	103, 143, 156
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	32, 72, 203
AluBI	AGCT	4 cut(s)	216, 269, 429, 442
AluI	AGCT	4 cut(s)	216, 269, 429, 442
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	3 cut(s)	103, 143, 156
AoxI	GGCC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	444
BccI	CCATC	1 cut(s)	204
BfaI	CTAG	3 cut(s)	60, 213, 332
BmiI	GGNNCC	4 cut(s)	114, 150, 254, 291
BmsI	GCATC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	451
BsaBI	GATNNNNATC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	383
Bse8I	GATNNNNATC	1 cut(s)	72
BseGI	GGATG	1 cut(s)	41
BseJI	GATNNNNATC	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	95, 148, 230, 271
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	4 cut(s)	114, 150, 254, 291
BspPI	GGATC	3 cut(s)	103, 143, 156
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	4 cut(s)	95, 148, 230, 271
BssNI	GRCGYC	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	41
BstKTI	GATC	4 cut(s)	98, 151, 233, 274
BstMBI	GATC	4 cut(s)	95, 148, 230, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	180
CviAII	CATG	3 cut(s)	191, 395, 445
CviJI	RGCY	8 cut(s)	48, 187, 195, 216, 269, 292, 429, 442
CviKI_1	RGCY	8 cut(s)	48, 187, 195, 216, 269, 292, 429, 442
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	4 cut(s)	97, 150, 232, 273
DpnII	GATC	4 cut(s)	95, 148, 230, 271
EaeI	YGGCCR	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	3 cut(s)	194, 398, 448
FaiI	YATR	6 cut(s)	168, 192, 329, 355, 396, 446
FatI	CATG	3 cut(s)	190, 394, 444
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	444
FspBI	CTAG	3 cut(s)	60, 213, 332
HaeIII	GGCC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	3 cut(s)	194, 398, 448
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	2 cut(s)	68, 140
Hpy188I	TCNGA	3 cut(s)	134, 148, 276
Hpy188III	TCNNGA	4 cut(s)	17, 93, 200, 287
HpyAV	CCTTC	3 cut(s)	48, 153, 243
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	375, 463
HpyCH4V	TGCA	5 cut(s)	166, 178, 351, 383, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	2 cut(s)	375, 463
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	3 cut(s)	194, 398, 448
Kzo9I	GATC	4 cut(s)	95, 148, 230, 271
LmnI	GCTCC	2 cut(s)	19, 289
LpnPI	CCDG	8 cut(s)	2, 58, 78, 129, 141, 165, 272, 309
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	3 cut(s)	60, 213, 332
MaeII	ACGT	2 cut(s)	375, 463
MalI	GATC	4 cut(s)	97, 150, 232, 273
MboI	GATC	4 cut(s)	95, 148, 230, 271
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	3 cut(s)	100, 303, 313
MluNI	TGGCCA	1 cut(s)	195
MnlI	CCTC	2 cut(s)	198, 416
Mox20I	TGGCCA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	269
MunI	CAATTG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	4 cut(s)	95, 148, 230, 271
NlaIII	CATG	3 cut(s)	194, 398, 448
NlaIV	GGNNCC	4 cut(s)	114, 150, 254, 291
PctI	GAATGC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	68, 140
Psp124BI	GAGCTC	1 cut(s)	444
PspN4I	GGNNCC	4 cut(s)	114, 150, 254, 291
PsuI	RGATCY	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	444
Sau3AI	GATC	4 cut(s)	95, 148, 230, 271
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	3 cut(s)	100, 303, 313
SspMI	CTAG	3 cut(s)	60, 213, 332
SstI	GAGCTC	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	2 cut(s)	378, 466
TaqI	TCGA	1 cut(s)	76
TasI	AATT	3 cut(s)	100, 303, 313
TfiI	GAWTC	2 cut(s)	68, 140
TscAI	CASTG	1 cut(s)	123
TspDTI	ATGAA	2 cut(s)	30, 132
TspRI	CASTG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	3 cut(s)	60, 213, 332
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.