Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019754

Physical Location & Seq

Genomic Coordinates Reverse (-)

52374128 .. 52381053

Gene Structure 6926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG407800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAGACAGATATTTCAGGAGCAGACAGTTGAACCACCTTCATCCAGCCAAATGATTTCTAGCAAGGATTCAAATCGAAATCCTTTGGCATCTGGATCAAATTCACAAAAGGTTCCAGTGAATAAAATGGTCAGAACAGATTCATCGGATCCTGCTGGAAGGTTGCATATTTACTTGCACGCAGAGCCTCATGGCCATCTTGAAAAGAATACTAGCTTGACTGCTGTTAGATCGTCTGTTAGACAAAGAAGGAACCCAAAGGAAACAGCTGATCTGAGTAGCATTCAGGAGCCTATTGCTCAAATTGATAGCAATTGTCATTCTGGTATGCTAGACATTGTGAGAAACTGCACATACATTGGAATGGCAGATGACGTCTTTGCATTGCTTCAGCATGACACACACCTCTATCTTGCAAATGTAGTAAGCTTGAGCAAAGAGCTCATGTATCAGCAAGGGGATACAGATCCAGAATCCACTGAGAATGATGAACTAAATGAGAAGATTGCAGAAATGAATACAGAACTACTTAAGCAAAAGGCTGATCTAGTAGAGGAGTACTTTTCCATTCACATAGATAAAGATGGAAATTTGTCCAGGCTTCCGGTCATACTTGACCAATACACACCTGACATGGATCGTGTCCCAGAATTTGTGCTTTGTTTGGGCAACGATGTTGATTGGGAAGAAGAGAAAAAATGCTTCCAAGTAATTTCAGCTGCACTCGGGAACCTTTATGCCATGCATCCTCCTATGTTACCCAACCCATCTGGTGATGGTTTGCAATTTTACCAAAAAAGGAAGTTGGTCAGGAATAATGAAGGAAGTCTCTCTTGCAATACTGCTGCGGATGATATGATGATGGAGGATGAAATCGAGCATGAACTAGTTGCAGAGGCAGAGACTGCATGGGCACAGCGCGAATGGTCGATCCAGCATGTATTGTTTCCATCAATGAGGCTCTTTTTTAAGCCACCAAATTCTATGGCTACAAATGGAACATTTGTTCGAGTTGCTTCACTTGAGAAGCTGTACAGGATTTTTGAAAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

351

Amino Acids

39.82

Weight (kDa)

4.99

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlh1_C	PF16413	92 - 153	1.2e-14	DNA mismatch repair protein Mlh1 C-terminus
Mlh1_C	PF16413	158 - 351	1.7e-50	DNA mismatch repair protein Mlh1 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019754)

Species	Orthologous Gene IDs
malus_domestica	MD14G1034100.v1.1
pyrus_communis	pycom08g11520
rosa_multiflora	Rmu_sc0003722.1_g000005 Rmu_sc0039398.1_g000001
rosa_samantha	Rh7AG388500 Rh7AG388600 Rh7CG407800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
AccII	CGCG	1 cut(s)	921
AciI	CCGC	1 cut(s)	848
AclWI	GGATC	6 cut(s)	103, 143, 156, 461, 645, 925
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	4 cut(s)	100, 589, 650, 979
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	2 cut(s)	560, 1034
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	4 cut(s)	32, 72, 203, 1046
AhlI	ACTAGT	1 cut(s)	886
AjnI	CCWGG	1 cut(s)	596
AloI	GAACNNNNNNTCC	2 cut(s)	990, 1022
AluBI	AGCT	6 cut(s)	216, 269, 429, 442, 719, 1030
AluI	AGCT	6 cut(s)	216, 269, 429, 442, 719, 1030
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	833, 896
AlwI	GGATC	6 cut(s)	103, 143, 156, 461, 645, 925
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	719, 845
ApoI	RAATTY	4 cut(s)	100, 589, 650, 979
Asp700I	GAANNNNTTC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	921
AsuHPI	GGTGA	1 cut(s)	785
AvaI	CYCGRG	1 cut(s)	725
BaeGI	GKGCMC	1 cut(s)	916
BalI	TGGCCA	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	706, 832
BccI	CCATC	6 cut(s)	204, 578, 770, 775, 856, 958
BciT130I	CCWGG	1 cut(s)	598
BciVI	GTATCC	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	833, 896
BcuI	ACTAGT	1 cut(s)	886
BfaI	CTAG	5 cut(s)	60, 213, 332, 548, 887
BfrI	CTTAAG	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	720, 846
BlsI	GCNGC	2 cut(s)	721, 847
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	1 cut(s)	598
BmeT110I	CYCGRG	1 cut(s)	725
BmiI	GGNNCC	5 cut(s)	114, 150, 254, 291, 731
BmrFI	CCNGG	1 cut(s)	598
BmsI	GCATC	3 cut(s)	98, 754, 1040
BpuEI	CTTGAG	2 cut(s)	451, 1043
BsaBI	GATNNNNATC	2 cut(s)	72, 465
BsaHI	GRCGYC	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	604
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	383
Bse8I	GATNNNNATC	2 cut(s)	72, 465
BseBI	CCWGG	1 cut(s)	598
BseGI	GGATG	4 cut(s)	41, 745, 856, 874
BseJI	GATNNNNATC	2 cut(s)	72, 465
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	266, 471
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	569
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	2 cut(s)	706, 832
BsgI	GTGCAG	2 cut(s)	334, 705
Bsh1236I	CGCG	1 cut(s)	921
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	629
BsmAI	GTCTC	2 cut(s)	833, 896
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	2 cut(s)	444, 916
Bsp1407I	TGTACA	1 cut(s)	1032
Bsp143I	GATC	8 cut(s)	95, 148, 230, 271, 466, 544, 637, 930
BspACI	CCGC	1 cut(s)	848
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	267, 472
BspFNI	CGCG	1 cut(s)	921
BspLI	GGNNCC	5 cut(s)	114, 150, 254, 291, 731
BspPI	GGATC	6 cut(s)	103, 143, 156, 461, 645, 925
BspTI	CTTAAG	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	383
BsrGI	TGTACA	1 cut(s)	1032
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	8 cut(s)	95, 148, 230, 271, 466, 544, 637, 930
BssNI	GRCGYC	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	684
BstACI	GRCGYC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	530
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstAUI	TGTACA	1 cut(s)	1032
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	275, 480
BstF5I	GGATG	4 cut(s)	41, 745, 856, 874
BstFNI	CGCG	1 cut(s)	921
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	8 cut(s)	98, 151, 233, 274, 469, 547, 640, 933
BstMAI	GTCTC	2 cut(s)	833, 896
BstMBI	GATC	8 cut(s)	95, 148, 230, 271, 466, 544, 637, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 905
BstNI	CCWGG	1 cut(s)	598
BstNSI	RCATGY	1 cut(s)	941
BstSCI	CCNGG	1 cut(s)	596
BstSLI	GKGCMC	1 cut(s)	916
BstUI	CGCG	1 cut(s)	921
BstV1I	GCAGC	2 cut(s)	706, 832
BstX2I	RGATCY	2 cut(s)	148, 466
BstYI	RGATCY	2 cut(s)	148, 466
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	4 cut(s)	41, 745, 856, 874
BtsIMutI	CAGTG	2 cut(s)	123, 477
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	905
CfoI	GCGC	1 cut(s)	921
Csp6I	GTAC	2 cut(s)	559, 1033
CviAII	CATG	8 cut(s)	191, 395, 445, 634, 742, 881, 909, 938
CviQI	GTAC	2 cut(s)	559, 1033
DdeI	CTNAG	2 cut(s)	275, 480
DpnI	GATC	8 cut(s)	97, 150, 232, 273, 468, 546, 639, 932
DpnII	GATC	8 cut(s)	95, 148, 230, 271, 466, 544, 637, 930
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	725
EcoICRI	GAGCTC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	596
EcoT22I	ATGCAT	1 cut(s)	747
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	8 cut(s)	194, 398, 448, 637, 745, 884, 912, 941
FalI	AAGNNNNNCTT	2 cut(s)	817, 849
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	8 cut(s)	190, 394, 444, 633, 741, 880, 908, 937
Fnu4HI	GCNGC	2 cut(s)	720, 846
FokI	GGATG	4 cut(s)	28, 732, 863, 881
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	720, 846
FspBI	CTAG	5 cut(s)	60, 213, 332, 548, 887
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	2 cut(s)	720, 846
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	605
HhaI	GCGC	1 cut(s)	921
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	8 cut(s)	194, 398, 448, 637, 745, 884, 912, 941
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	3 cut(s)	68, 140, 473
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	1 cut(s)	785
Hpy188I	TCNGA	3 cut(s)	134, 148, 276
Hpy188III	TCNNGA	7 cut(s)	17, 93, 200, 287, 470, 727, 811
HpyAV	CCTTC	4 cut(s)	48, 153, 243, 815
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 905
HpyF3I	CTNAG	2 cut(s)	275, 480
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	8 cut(s)	194, 398, 448, 637, 745, 884, 912, 941
HspAI	GCGC	1 cut(s)	919
Kzo9I	GATC	8 cut(s)	95, 148, 230, 271, 466, 544, 637, 930
LmnI	GCTCC	2 cut(s)	19, 289
Lsp1109I	GCAGC	2 cut(s)	706, 832
LweI	GCATC	3 cut(s)	98, 754, 1040
MaeI	CTAG	5 cut(s)	60, 213, 332, 548, 887
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	756
MalI	GATC	8 cut(s)	97, 150, 232, 273, 468, 546, 639, 932
MboI	GATC	8 cut(s)	95, 148, 230, 271, 466, 544, 637, 930
MboII	GAAGA	3 cut(s)	514, 698, 701
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	2 cut(s)	148, 466
MhlI	GDGCHC	2 cut(s)	444, 916
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	8 cut(s)	100, 303, 313, 589, 650, 711, 785, 979
MluNI	TGGCCA	1 cut(s)	195
MnlI	CCTC	7 cut(s)	198, 416, 547, 759, 859, 889, 951
Mox20I	TGGCCA	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	747
MroXI	GAANNNNTTC	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	531, 969
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	2 cut(s)	269, 719
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	598
MunI	CAATTG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	598
MvnI	CGCG	1 cut(s)	921
MwoI	GCNNNNNNNGC	2 cut(s)	184, 905
NdeII	GATC	8 cut(s)	95, 148, 230, 271, 466, 544, 637, 930
NlaIII	CATG	8 cut(s)	194, 398, 448, 637, 745, 884, 912, 941
NlaIV	GGNNCC	5 cut(s)	114, 150, 254, 291, 731
NsiI	ATGCAT	1 cut(s)	747
NspI	RCATGY	1 cut(s)	941
PctI	GAATGC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	68, 140, 473
PkrI	GCNGC	2 cut(s)	721, 847
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	5 cut(s)	114, 150, 254, 291, 731
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	2 cut(s)	148, 466
PvuII	CAGCTG	2 cut(s)	269, 719
RsaI	GTAC	2 cut(s)	560, 1034
RsaNI	GTAC	2 cut(s)	559, 1033
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	531, 969
SatI	GCNGC	2 cut(s)	720, 846
Sau3AI	GATC	8 cut(s)	95, 148, 230, 271, 466, 544, 637, 930
ScaI	AGTACT	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	598
SduI	GDGCHC	2 cut(s)	444, 916
SfaNI	GCATC	3 cut(s)	98, 754, 1040
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	3 cut(s)	430, 530, 1022
SmoI	CTYRAG	3 cut(s)	430, 530, 1022
SpeI	ACTAGT	1 cut(s)	886
Sse9I	AATT	8 cut(s)	100, 303, 313, 589, 650, 711, 785, 979
SsiI	CCGC	1 cut(s)	848
SspMI	CTAG	5 cut(s)	60, 213, 332, 548, 887
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	596
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	4 cut(s)	76, 876, 929, 1009
TasI	AATT	8 cut(s)	100, 303, 313, 589, 650, 711, 785, 979
TatI	WGTACW	2 cut(s)	558, 1032
TfiI	GAWTC	3 cut(s)	68, 140, 473
Tru1I	TTAA	2 cut(s)	531, 969
Tru9I	TTAA	2 cut(s)	531, 969
TscAI	CASTG	2 cut(s)	123, 484
TseI	GCWGC	2 cut(s)	719, 845
TspDTI	ATGAA	7 cut(s)	30, 132, 504, 530, 834, 885, 897
TspRI	CASTG	2 cut(s)	123, 484
Vha464I	CTTAAG	1 cut(s)	530
XapI	RAATTY	4 cut(s)	100, 589, 650, 979
XceI	RCATGY	1 cut(s)	941
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	5 cut(s)	60, 213, 332, 548, 887
ZraI	GACGTC	1 cut(s)	376
ZrmI	AGTACT	1 cut(s)	560
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.