Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0019754

Physical Location & Seq

Genomic Coordinates Reverse (-)

50952763 .. 50955595

Gene Structure 2833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG388500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAATACAGAACTACTTAAGCAAAAGGCTGATCTAGTAGAGGAGTACTTTTCCATTCACATAGATAAAGATGGAAATTTGTCCAGGCTTCCGGTCATACTTGACCAATACACACCTGACATGGATCGTGTCCCAGAATTTGTGCTTTGTTTGGGCAACGATGTTGATTGGGAAGAAGAGAAAAAATGCTTCCAAGTAATTTCAGCTGCACTCGGGAACCTTTATGCCATGCATCCTCCTATGTTACCCAACCCATCTGGTGATGGTTTGCAATTTTACCAAAAAAGGAAGTTGGTCAGGAATAATGAAGGAAGTCTCTCTTGCAATACTGCTGCGGATGATATGATGATGGAGGATGAAATCGAGCATGAACTAGTTGCAGAGGCAGAGACTGCATGGGCACAGCGCGAATGGTCGATCCAGCATGTATTGTTTCCATCAATGAGGCTCTTTTTTAAGCCACCAAATTCTATGGCTACAAATGGAACATTTGTTCGAGTTGCTTCACTTGAGAAGCTGTACAGGATTTTTGAAAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

180

Amino Acids

20.77

Weight (kDa)

4.79

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlh1_C	PF16413	3 - 180	1.7e-48	DNA mismatch repair protein Mlh1 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0019754)

Species	Orthologous Gene IDs
malus_domestica	MD14G1034100.v1.1
pyrus_communis	pycom08g11520
rosa_multiflora	Rmu_sc0003722.1_g000005 Rmu_sc0039398.1_g000001
rosa_samantha	Rh7AG388500 Rh7AG388600 Rh7CG407800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	408
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	2 cut(s)	132, 412
AcsI	RAATTY	3 cut(s)	76, 137, 466
AfaI	GTAC	2 cut(s)	47, 521
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	533
AhlI	ACTAGT	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	83
AloI	GAACNNNNNNTCC	2 cut(s)	477, 509
AluBI	AGCT	2 cut(s)	206, 517
AluI	AGCT	2 cut(s)	206, 517
Alw26I	GTCTC	2 cut(s)	320, 383
AlwI	GGATC	2 cut(s)	132, 412
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	206, 332
ApoI	RAATTY	3 cut(s)	76, 137, 466
AspLEI	GCGC	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	193, 319
BccI	CCATC	5 cut(s)	65, 257, 262, 343, 445
BciT130I	CCWGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	320, 383
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	2 cut(s)	35, 374
BfrI	CTTAAG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	207, 333
BlsI	GCNGC	2 cut(s)	208, 334
BmcAI	AGTACT	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	241, 527
BpuEI	CTTGAG	1 cut(s)	530
BsaWI	WCCGGW	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	85
BseGI	GGATG	3 cut(s)	232, 343, 361
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	193, 319
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	320, 383
BsmFI	GGGAC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	31, 124, 417
BspACI	CCGC	1 cut(s)	335
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	132, 412
BspTI	CTTAAG	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	519
BssMI	GATC	3 cut(s)	31, 124, 417
Bst2UI	CCWGG	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	519
BstF5I	GGATG	3 cut(s)	232, 343, 361
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	3 cut(s)	34, 127, 420
BstMAI	GTCTC	2 cut(s)	320, 383
BstMBI	GATC	3 cut(s)	31, 124, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	193, 319
BtsCI	GGATG	3 cut(s)	232, 343, 361
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	408
Csp6I	GTAC	2 cut(s)	46, 520
CviAII	CATG	5 cut(s)	121, 229, 368, 396, 425
CviJI	RGCY	7 cut(s)	29, 88, 206, 448, 460, 476, 517
CviKI_1	RGCY	7 cut(s)	29, 88, 206, 448, 460, 476, 517
CviQI	GTAC	2 cut(s)	46, 520
DpnI	GATC	3 cut(s)	33, 126, 419
DpnII	GATC	3 cut(s)	31, 124, 417
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	83
EcoT22I	ATGCAT	1 cut(s)	234
FaeI	CATG	5 cut(s)	124, 232, 371, 399, 428
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	5 cut(s)	120, 228, 367, 395, 424
Fnu4HI	GCNGC	2 cut(s)	207, 333
FokI	GGATG	3 cut(s)	219, 350, 368
Fsp4HI	GCNGC	2 cut(s)	207, 333
FspBI	CTAG	2 cut(s)	35, 374
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	2 cut(s)	207, 333
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	5 cut(s)	124, 232, 371, 399, 428
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	272
Hpy188III	TCNNGA	2 cut(s)	214, 298
HpyAV	CCTTC	1 cut(s)	302
HpyCH4V	TGCA	6 cut(s)	209, 232, 271, 324, 380, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
Hsp92II	CATG	5 cut(s)	124, 232, 371, 399, 428
HspAI	GCGC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	31, 124, 417
LpnPI	CCDG	9 cut(s)	70, 97, 105, 129, 147, 243, 283, 434, 508
Lsp1109I	GCAGC	2 cut(s)	193, 319
LweI	GCATC	2 cut(s)	241, 527
MaeI	CTAG	2 cut(s)	35, 374
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	3 cut(s)	33, 126, 419
MboI	GATC	3 cut(s)	31, 124, 417
MboII	GAAGA	2 cut(s)	185, 188
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	5 cut(s)	76, 137, 198, 272, 466
MnlI	CCTC	5 cut(s)	34, 246, 346, 376, 438
Mph1103I	ATGCAT	1 cut(s)	234
MseI	TTAA	2 cut(s)	18, 456
MspA1I	CMGCKG	1 cut(s)	206
MspCI	CTTAAG	1 cut(s)	17
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	3 cut(s)	31, 124, 417
NlaIII	CATG	5 cut(s)	124, 232, 371, 399, 428
NlaIV	GGNNCC	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	208, 334
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	47, 521
RsaNI	GTAC	2 cut(s)	46, 520
SaqAI	TTAA	2 cut(s)	18, 456
SatI	GCNGC	2 cut(s)	207, 333
Sau3AI	GATC	3 cut(s)	31, 124, 417
ScaI	AGTACT	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	403
SetI	ASST	4 cut(s)	118, 208, 222, 519
SfaNI	GCATC	2 cut(s)	241, 527
SmlI	CTYRAG	2 cut(s)	17, 509
SmoI	CTYRAG	2 cut(s)	17, 509
SpeI	ACTAGT	1 cut(s)	373
Sse9I	AATT	5 cut(s)	76, 137, 198, 272, 466
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	2 cut(s)	35, 374
StyD4I	CCNGG	1 cut(s)	83
TaqI	TCGA	3 cut(s)	363, 416, 496
TasI	AATT	5 cut(s)	76, 137, 198, 272, 466
TatI	WGTACW	2 cut(s)	45, 519
Tru1I	TTAA	2 cut(s)	18, 456
Tru9I	TTAA	2 cut(s)	18, 456
TseI	GCWGC	2 cut(s)	206, 332
TspDTI	ATGAA	4 cut(s)	17, 321, 372, 384
Vha464I	CTTAAG	1 cut(s)	17
XapI	RAATTY	3 cut(s)	76, 137, 466
XceI	RCATGY	1 cut(s)	428
XspI	CTAG	2 cut(s)	35, 374
ZrmI	AGTACT	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.