Rmu_sc0039398.1_g000001

DNA mismatch repair protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039398.1
Physical Location & Seq
Forward (+)
1 .. 868
868 bp
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UTR
Exon/CDS
Intron
Rmu_sc0039398.1_g000001.1.cds

Sequence Viewer

Length: 212 bp
gtgcggatgatatgatgacggaggatgaaatcgagcatgaactagttgcagaagcagagactgcatgggcacagcgcgaatggtcaatccagcatgtgttgtttccatcaatgaggctcttttttaagccaccaaattctatggctacaaatggaacatttgttcgagttgcttcactagaaaagctgtacaggatttttgaaagatgctga

Protein Analysis

69

Amino Acids

8.12

Weight (kDa)

4.83

Isoelectric Point (pI)

15.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019754)

Species Orthologous Gene IDs
malus_domestica MD14G1034100.v1.1
pyrus_communis pycom08g11520
rosa_multiflora Rmu_sc0003722.1_g000005 Rmu_sc0039398.1_g000001
rosa_samantha Rh7AG388500 Rh7AG388600 Rh7CG407800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 1 cut(s) 202
AhlI ACTAGT 1 cut(s) 42
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 52
AlwNI CAGNNNCTG 1 cut(s) 61
ApoI RAATTY 1 cut(s) 135
AspLEI GCGC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 72
BccI CCATC 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 52
BcuI ACTAGT 1 cut(s) 42
BfaI CTAG 2 cut(s) 43, 178
BmsI GCATC 1 cut(s) 196
BseGI GGATG 2 cut(s) 12, 30
BseSI GKGCMC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 188
BspACI CCGC 1 cut(s) 4
BspFNI CGCG 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 188
BstAPI GCANNNNNTGC 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 188
BstF5I GGATG 2 cut(s) 12, 30
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 72
BstUI CGCG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 12, 30
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 37, 65, 94
CviJI RGCY 4 cut(s) 117, 129, 145, 186
CviKI_1 RGCY 4 cut(s) 117, 129, 145, 186
CviQI GTAC 1 cut(s) 189
FaeI CATG 3 cut(s) 40, 68, 97
FaiI YATR 5 cut(s) 13, 38, 66, 95, 142
FatI CATG 3 cut(s) 36, 64, 93
FokI GGATG 2 cut(s) 19, 37
FspBI CTAG 2 cut(s) 43, 178
GlaI GCGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 77
Hin1II CATG 3 cut(s) 40, 68, 97
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 49, 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
Hsp92II CATG 3 cut(s) 40, 68, 97
HspAI GCGC 1 cut(s) 75
LpnPI CCDG 2 cut(s) 103, 177
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 43, 178
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 135
MnlI CCTC 2 cut(s) 15, 107
MseI TTAA 1 cut(s) 125
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 61
NlaIII CATG 3 cut(s) 40, 68, 97
NspI RCATGY 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 125
SduI GDGCHC 1 cut(s) 72
SetI ASST 1 cut(s) 188
SfaNI GCATC 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 42
Sse9I AATT 1 cut(s) 135
SsiI CCGC 1 cut(s) 4
SspMI CTAG 2 cut(s) 43, 178
TaqI TCGA 2 cut(s) 32, 165
TasI AATT 1 cut(s) 135
TatI WGTACW 1 cut(s) 188
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 41, 53
TspGWI ACGGA 1 cut(s) 34
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 97
XspI CTAG 2 cut(s) 43, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.