pycom08g16150

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0014932
Physical Location & Seq
Reverse (-)
16027243 .. 16029934
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g16150.6

Sequence Viewer

Length: 1038 bp
ATGCAGAAGAAGAGGTCGGTAGCATTGGCCTCACTGAGGAAAGTGCTAACGTGCGCCATATGCTCAATGGCGCTAGTGGCTCTCTTCTCCGTCCACGTACCTATTTTCCCTTCTTCAAAGGTCCATGACTTCTCTGACCCCTTCAAGCTCCCCACGCAACATGATATTAAATACCAGAAGTTGAGCGCCGAGCAGAGCTGGACACTGGAGATCGCTCCGCCCCATCTGTTGAAAACGCCTCTGCCTTCTAGTTCTCGCAAGTTGGAACGTTCGAGTGGGATTTTGGAAACTGACAAGCTATGGAAGCCTCCATCAAATCGCGATTTTGTGCCATGTGTAGAGCCAAGTCCCAATTATACATCTCCTACAGAGTCACGGGGTTACCTGCTAGTTAATACAAATGGTGGTCTCAACCAGATGTGTGCTGGGATATGTGACATGGTAGCAGTAGCCCGTATCATAAATGCTACTCTTGTAATTCCGGAACTTGATAAACAATCATTTTGGAATGACTCTAGCAACTTCTCAGATGTTTTTGATGAAGATCATTTTATCAATGCTTTAGTGAATGATGTCAAAATTATAAAAATCCTTCCTAAGGAACTAGCTACTGGTATAAGAGCGGTTAAGCATTTCAGAAGCTGGTCTGGTATGGATTATTACCAAGATGAGATAGCTGGCCTCTGGGAAGAATACGAGGTTATTCGAGCTGCCAAATCTGATTCTCGCTTGGCAAATAACAACCTACCTTTAGATATACAGAAGCTTCGCTGCCGTGCTTGTTATGAAGCTCTACGTTTTGCACCTCAAATTGAAGCAATGGGAAAACTGTTAGTTGATCAAATGAGGTCGTTTGGTCCTTATATTGCTCTGCATTTACGATTTGAGGAGGACATGCTTGCCTTTAGTGGATGCACAAAAGATTTATCTCCAGATGAATCTGAGGAACTAAGGATAATTAGAGAGAATACCCCATACTGGAAAGAGAAGGAAATTGATGCCGCAGAACGGATCGATCCAAAGGGTATTGCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

346

Amino Acids

39.05

Weight (kDa)

6.04

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22460
fragaria_vesca FvH4_5g36600
malus_domestica MD08G1188100.v1.1 MD15G1374100.v1.1
pyrus_communis pycom08g16150 pycom15g33520
rosa_chinensis RchiOBHm_Chr7g0242381
rosa_laevigata RLG00000000897
rosa_multiflora Rmu_sc0000429.1_g000056
rosa_roxburghii Rroxscaffold_3G00222720
rosa_rugosa Rorug07G0315100
rosa_samantha Rh7AG470600 Rh7BG440500 Rh7CG487200 Rh7DG455700
rosa_wichuraiana Rw0G009510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
Acc36I ACCTGC 1 cut(s) 393
AccBSI CCGCTC 1 cut(s) 623
AccII CGCG 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 3 cut(s) 218, 623, 1002
AclI AACGTT 1 cut(s) 268
AclWI GGATC 2 cut(s) 1010, 1019
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 4 cut(s) 36, 598, 978, 1008
AgsI TTSAA 4 cut(s) 117, 145, 232, 815
AluBI AGCT 9 cut(s) 148, 198, 298, 608, 642, 677, 710, 766, 791
AluI AGCT 9 cut(s) 148, 198, 298, 608, 642, 677, 710, 766, 791
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 2 cut(s) 1010, 1019
AlwNI CAGNNNCTG 1 cut(s) 642
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 2 cut(s) 27, 679
ApeKI GCWGC 2 cut(s) 710, 771
AspLEI GCGC 3 cut(s) 56, 73, 188
AspS9I GGNCC 2 cut(s) 121, 857
AvaII GGWCC 2 cut(s) 121, 857
AxyI CCTNAGG 1 cut(s) 597
BbvI GCAGC 2 cut(s) 697, 758
BccI CCATC 2 cut(s) 231, 319
BceAI ACGGC 1 cut(s) 759
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 5 cut(s) 74, 249, 389, 516, 605
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 2 cut(s) 74, 189
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 3 cut(s) 711, 772, 1002
BlsI GCNGC 3 cut(s) 712, 773, 1003
Bme18I GGWCC 2 cut(s) 121, 857
BmgT120I GGNCC 2 cut(s) 121, 857
BmsI GCATC 2 cut(s) 902, 988
BpmI CTGGAG 2 cut(s) 227, 915
Bsa29I ATCGAT 1 cut(s) 1014
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 481
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 598, 978, 1008
Bse1I ACTGG 3 cut(s) 210, 616, 983
Bse21I CCTNAGG 1 cut(s) 597
Bse3DI GCAATG 1 cut(s) 825
Bse8I GATNNNNATC 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 1014
BseGI GGATG 1 cut(s) 917
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 4 cut(s) 36, 598, 978, 1008
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 3 cut(s) 26, 540, 933
BseNI ACTGG 3 cut(s) 210, 616, 983
BseRI GAGGAG 1 cut(s) 902
BseXI GCAGC 2 cut(s) 697, 758
BseYI CCCAGC 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 29, 681
BshVI ATCGAT 1 cut(s) 1014
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 4 cut(s) 36, 598, 978, 1008
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 2 cut(s) 29, 681
Bso31I GGTCTC 1 cut(s) 413
Bsp13I TCCGGA 1 cut(s) 481
Bsp143I GATC 5 cut(s) 210, 544, 838, 1011, 1015
Bsp68I TCGCGA 1 cut(s) 321
BspACI CCGC 3 cut(s) 218, 623, 1002
BspANI GGCC 2 cut(s) 29, 681
BspCNI CTCAG 3 cut(s) 27, 539, 934
BspDI ATCGAT 1 cut(s) 1014
BspEI TCCGGA 1 cut(s) 481
BspFNI CGCG 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 2 cut(s) 1010, 1019
BspTNI GGTCTC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 825
BsrI ACTGG 3 cut(s) 210, 616, 983
BssMI GATC 5 cut(s) 210, 544, 838, 1011, 1015
Bst4CI ACNGT 1 cut(s) 831
Bst6I CTCTTC 2 cut(s) 5, 89
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 679, 900
BstDEI CTNAG 5 cut(s) 35, 526, 597, 942, 950
BstEII GGTNACC 1 cut(s) 380
BstENI CCTNNNNNAGG 2 cut(s) 34, 596
BstF5I GGATG 1 cut(s) 917
BstFNI CGCG 1 cut(s) 321
BstH2I RGCGCY 2 cut(s) 74, 189
BstHHI GCGC 3 cut(s) 56, 73, 188
BstKTI GATC 5 cut(s) 213, 547, 841, 1014, 1018
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 5 cut(s) 210, 544, 838, 1011, 1015
BstMWI GCNNNNNNNGC 4 cut(s) 60, 77, 154, 304
BstNSI RCATGY 1 cut(s) 898
BstPI GGTNACC 1 cut(s) 380
BstSFI CTRYAG 1 cut(s) 366
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 697, 758
Bsu15I ATCGAT 1 cut(s) 1014
Bsu36I CCTNAGG 1 cut(s) 597
BsuRI GGCC 2 cut(s) 29, 681
BsuTUI ATCGAT 1 cut(s) 1014
BtsCI GGATG 1 cut(s) 917
BtsIMutI CAGTG 2 cut(s) 32, 203
BtuMI TCGCGA 1 cut(s) 321
BveI ACCTGC 1 cut(s) 393
Cac8I GCNNGC 2 cut(s) 679, 900
CaiI CAGNNNCTG 1 cut(s) 642
CfoI GCGC 3 cut(s) 56, 73, 188
Cfr13I GGNCC 2 cut(s) 121, 857
ClaI ATCGAT 1 cut(s) 1014
Csp6I GTAC 1 cut(s) 98
CviAII CATG 5 cut(s) 125, 161, 333, 439, 895
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 5 cut(s) 35, 526, 597, 942, 950
DpnI GATC 5 cut(s) 212, 546, 840, 1013, 1017
DpnII GATC 5 cut(s) 210, 544, 838, 1011, 1015
Eam1104I CTCTTC 2 cut(s) 5, 89
EarI CTCTTC 2 cut(s) 5, 89
EciI GGCGGA 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 2 cut(s) 121, 857
Eco81I CCTNAGG 1 cut(s) 597
Eco91I GGTNACC 1 cut(s) 380
EcoNI CCTNNNNNAGG 2 cut(s) 34, 596
EcoO65I GGTNACC 1 cut(s) 380
FaeI CATG 5 cut(s) 128, 164, 336, 442, 898
FaqI GGGAC 1 cut(s) 333
FatI CATG 5 cut(s) 124, 160, 332, 438, 894
FauNDI CATATG 1 cut(s) 59
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 3 cut(s) 711, 772, 1002
FokI GGATG 1 cut(s) 924
Fsp4HI GCNGC 3 cut(s) 711, 772, 1002
FspBI CTAG 5 cut(s) 74, 249, 389, 516, 605
GlaI GCGC 3 cut(s) 55, 72, 187
GluI GCNGC 3 cut(s) 711, 772, 1002
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 2 cut(s) 227, 915
HaeII RGCGCY 2 cut(s) 74, 189
HaeIII GGCC 2 cut(s) 29, 681
HapII CCGG 1 cut(s) 482
HhaI GCGC 3 cut(s) 56, 73, 188
Hin1II CATG 5 cut(s) 128, 164, 336, 442, 898
Hin6I GCGC 3 cut(s) 54, 71, 186
HinP1I GCGC 3 cut(s) 54, 71, 186
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 4 cut(s) 371, 512, 722, 938
HpaII CCGG 1 cut(s) 482
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 5 cut(s) 136, 529, 638, 721, 943
Hpy188III TCNNGA 3 cut(s) 320, 482, 932
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 5 cut(s) 120, 151, 255, 602, 982
HpyCH4III ACNGT 1 cut(s) 831
HpyCH4IV ACGT 4 cut(s) 50, 96, 268, 796
HpyCH4V TGCA 4 cut(s) 4, 803, 874, 915
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 77, 154, 304
HpyF3I CTNAG 5 cut(s) 35, 526, 597, 942, 950
HpySE526I ACGT 4 cut(s) 50, 96, 268, 796
Hsp92II CATG 5 cut(s) 128, 164, 336, 442, 898
HspAI GCGC 3 cut(s) 54, 71, 186
Kpn2I TCCGGA 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 5 cut(s) 210, 544, 838, 1011, 1015
LmnI GCTCC 2 cut(s) 153, 220
Lsp1109I GCAGC 2 cut(s) 697, 758
LweI GCATC 2 cut(s) 902, 988
MaeI CTAG 5 cut(s) 74, 249, 389, 516, 605
MaeII ACGT 4 cut(s) 50, 96, 268, 796
MaeIII GTNAC 3 cut(s) 372, 380, 434
MalI GATC 5 cut(s) 212, 546, 840, 1013, 1017
MbiI CCGCTC 1 cut(s) 623
MboI GATC 5 cut(s) 210, 544, 838, 1011, 1015
MboII GAAGA 6 cut(s) 19, 22, 76, 105, 554, 701
MluCI AATT 6 cut(s) 352, 477, 579, 810, 957, 993
MlyI GAGTC 2 cut(s) 380, 506
MmeI TCCRAC 1 cut(s) 243
MroI TCCGGA 1 cut(s) 481
MseI TTAA 4 cut(s) 168, 393, 627, 1036
MspI CCGG 1 cut(s) 482
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 4 cut(s) 60, 77, 154, 304
NdeI CATATG 1 cut(s) 59
NdeII GATC 5 cut(s) 210, 544, 838, 1011, 1015
NlaIII CATG 5 cut(s) 128, 164, 336, 442, 898
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 372, 434
NruI TCGCGA 1 cut(s) 321
NspI RCATGY 1 cut(s) 898
PfeI GAWTC 2 cut(s) 722, 938
PkrI GCNGC 3 cut(s) 712, 773, 1003
PleI GAGTC 2 cut(s) 379, 506
PpsI GAGTC 2 cut(s) 379, 506
Ppu21I YACGTR 1 cut(s) 97
PsiI TTATAA 1 cut(s) 584
Psp1406I AACGTT 1 cut(s) 268
PspEI GGTNACC 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 425
PspPI GGNCC 2 cut(s) 121, 857
PstNI CAGNNNCTG 1 cut(s) 642
RruI TCGCGA 1 cut(s) 321
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 4 cut(s) 168, 393, 627, 1036
SatI GCNGC 3 cut(s) 711, 772, 1002
Sau3AI GATC 5 cut(s) 210, 544, 838, 1011, 1015
Sau96I GGNCC 2 cut(s) 121, 857
SchI GAGTC 2 cut(s) 380, 506
SfaNI GCATC 2 cut(s) 902, 988
SfcI CTRYAG 1 cut(s) 366
SinI GGWCC 2 cut(s) 121, 857
Sse9I AATT 6 cut(s) 352, 477, 579, 810, 957, 993
SsiI CCGC 3 cut(s) 218, 623, 1002
SspMI CTAG 5 cut(s) 74, 249, 389, 516, 605
TaaI ACNGT 1 cut(s) 831
TaiI ACGT 4 cut(s) 53, 99, 271, 799
TaqI TCGA 3 cut(s) 272, 706, 1014
TasI AATT 6 cut(s) 352, 477, 579, 810, 957, 993
TauI GCSGC 1 cut(s) 1004
TfiI GAWTC 2 cut(s) 722, 938
Tru1I TTAA 4 cut(s) 168, 393, 627, 1036
Tru9I TTAA 4 cut(s) 168, 393, 627, 1036
TscAI CASTG 2 cut(s) 39, 210
TseFI GTSAC 2 cut(s) 372, 434
TseI GCWGC 2 cut(s) 710, 771
Tsp45I GTSAC 2 cut(s) 372, 434
TspDTI ATGAA 3 cut(s) 555, 801, 951
TspGWI ACGGA 2 cut(s) 79, 1024
TspRI CASTG 2 cut(s) 39, 210
VpaK11BI GGWCC 2 cut(s) 121, 857
XagI CCTNNNNNAGG 2 cut(s) 34, 596
XceI RCATGY 1 cut(s) 898
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 422
XspI CTAG 5 cut(s) 74, 249, 389, 516, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.