Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014932

Physical Location & Seq

Genomic Coordinates Reverse (-)

32931367 .. 32934425

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCGTGCTGGGATATGTGACATGGTAGCAGTAGCCCGTATCATAAATGCTACTCTTGTAATTCCGGAACTTGATAAACGGTCATTTTGGAATGACTCTAGCAACTTCTCAGATGTTTTCGATGAAGATCATTTTATCAATGCTTTAGCTAATGATGTCAAAATTATAAAAAATCTTCCTAAGGAACTAGATACTGGTATAAGAGCGGTTAAGCATTTTAGAAGCTGGTCTGGTATGGATTATTACCAAGATGAGATAGCTGGCCTCTGGGAAGAATACGAGGTTATTCGAGCTGCCAAATCTGATTCTCGCTTGGCAAATAACAACCTACCTCTAGATATACAGAAGCTTCGCTGTCGTGCTTGTTATGAAGCTCTACGTTTTGCACCTCAAATTGAAGCAATGGGAAAATTGTTAGTTGATCGAATGAGGTCGTTTGGTCCTTATATTGCTCTGCATTTACGATTTGAGGAGGACATGCTTGCCTTTAGTGGATGCACACAAGATTTATCTCCAGATGAAGCTGAGGAACTAAGGATAATTCGAGAAAATACCCCATACTGGAAAGAGAAGGAAATTGATTCCACAGAACAGAGATCCAAAGGTTATTGCCCTTTAACACCAAAGGAGATTGGAATTTTTCTCACCTCTCTTGGGTACCCCTTGAACACACCTATATATCTTGCTGCTGGGAAGATATATGGCGGCGAGTCTCATATGGCTGCTCTGCGGTCCCGTTATCCAATACTGCTGAGCAAGGAAACATTGGCATCTGCCGAGGAGCTTGAACCTTTTACCAATCATGCATCTCAAATGGCTGCGCTTGACTACATTGTTTCAGTTGAAAGTGATGTATTTATACCTTCATACTCTGGAAACATGGCAAGAGCAGTCGAAGGTCATCGTCGATTTCTTGGACACAGGAAAACAATATCTCCTGACAGAAAATCCCTTGTTCGCCTGATTGACAAACTTGAGCAGGGAACTCTGAAAGAGGGCAAAAACCTATCAAATAGAGTTATTGAAATGCACAGGAAACGGCAAGGCTCCGCGCGGAAGAGAAAGGGTCCTATTTCAGGAACTAAGGGCACGGAAAGGTTTCGTTCAGAAGAACCCTTTTATGTGAACCCCTTACCAGATTGCTTGTGTAAGAAGGAATTTCCGATGCAAGCAACTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

394

Amino Acids

44.77

Weight (kDa)

7.6

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22460
fragaria_vesca	FvH4_5g36600
malus_domestica	MD08G1188100.v1.1 MD15G1374100.v1.1
pyrus_communis	pycom08g16150 pycom15g33520
rosa_chinensis	RchiOBHm_Chr7g0242381
rosa_laevigata	RLG00000000897
rosa_multiflora	Rmu_sc0000429.1_g000056
rosa_roxburghii	Rroxscaffold_3G00222720
rosa_rugosa	Rorug07G0315100
rosa_samantha	Rh7AG470600 Rh7BG440500 Rh7CG487200 Rh7DG455700
rosa_wichuraiana	Rw0G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
Acc65I	GGTACC	1 cut(s)	657
AccB1I	GGYRCC	1 cut(s)	657
AccBSI	CCGCTC	1 cut(s)	206
AccII	CGCG	2 cut(s)	1052, 1054
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	5 cut(s)	206, 705, 730, 1050, 1054
AclWI	GGATC	1 cut(s)	591
AcsI	RAATTY	2 cut(s)	636, 1157
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	3 cut(s)	561, 654, 1076
AgsI	TTSAA	5 cut(s)	398, 667, 788, 845, 1025
AluBI	AGCT	8 cut(s)	149, 225, 260, 293, 349, 374, 524, 784
AluI	AGCT	8 cut(s)	149, 225, 260, 293, 349, 374, 524, 784
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	1 cut(s)	591
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	4 cut(s)	293, 686, 722, 818
ApoI	RAATTY	2 cut(s)	636, 1157
Asp700I	GAANNNNTTC	1 cut(s)	1098
Asp718I	GGTACC	1 cut(s)	657
AspLEI	GCGC	2 cut(s)	823, 1054
AspS9I	GGNCC	3 cut(s)	440, 732, 1067
AsuHPI	GGTGA	1 cut(s)	637
AvaII	GGWCC	3 cut(s)	440, 732, 1067
AxyI	CCTNAGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	1091
BanI	GGYRCC	1 cut(s)	657
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	4 cut(s)	280, 673, 709, 805
BceAI	ACGGC	1 cut(s)	1055
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	3 cut(s)	99, 188, 335
BisI	GCNGC	5 cut(s)	294, 687, 706, 723, 819
BlpI	GCTNAGC	1 cut(s)	752
BlsI	GCNGC	5 cut(s)	295, 688, 707, 724, 820
Bme18I	GGWCC	3 cut(s)	440, 732, 1067
BmgT120I	GGNCC	3 cut(s)	440, 732, 1067
BmiI	GGNNCC	4 cut(s)	659, 734, 1048, 1068
BmsI	GCATC	4 cut(s)	485, 779, 815, 1155
BpmI	CTGGAG	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	995
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	777
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	919, 949
Bsc4I	CCNNNNNNNGG	3 cut(s)	561, 654, 1076
Bse1I	ACTGG	2 cut(s)	199, 566
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	777
BseGI	GGATG	1 cut(s)	500
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	561, 654, 1076
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	3 cut(s)	123, 516, 743
BseNI	ACTGG	2 cut(s)	199, 566
BseRI	GAGGAG	2 cut(s)	485, 794
BseSI	GKGCMC	1 cut(s)	1091
BseXI	GCAGC	4 cut(s)	280, 673, 709, 805
BseYI	CCCAGC	2 cut(s)	8, 689
Bsh1236I	CGCG	2 cut(s)	1052, 1054
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	3 cut(s)	561, 654, 1076
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	718
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	1091
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	127, 421, 596
Bsp1720I	GCTNAGC	1 cut(s)	752
BspACI	CCGC	5 cut(s)	206, 705, 730, 1050, 1054
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	3 cut(s)	122, 517, 744
BspEI	TCCGGA	1 cut(s)	64
BspFNI	CGCG	2 cut(s)	1052, 1054
BspLI	GGNNCC	4 cut(s)	659, 734, 1048, 1068
BspPI	GGATC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	657
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	199, 566
BssECI	CCNNGG	1 cut(s)	777
BssMI	GATC	3 cut(s)	127, 421, 596
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	1052
BstC8I	GCNNGC	4 cut(s)	6, 262, 483, 1170
BstDEI	CTNAG	6 cut(s)	109, 180, 525, 533, 752, 1083
BstENI	CCTNNNNNAGG	1 cut(s)	1074
BstF5I	GGATG	1 cut(s)	500
BstFNI	CGCG	2 cut(s)	1052, 1054
BstHHI	GCGC	2 cut(s)	823, 1054
BstKTI	GATC	3 cut(s)	130, 424, 599
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	3 cut(s)	127, 421, 596
BstNSI	RCATGY	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	1091
BstUI	CGCG	2 cut(s)	1052, 1054
BstV1I	GCAGC	4 cut(s)	280, 673, 709, 805
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	500
Cac8I	GCNNGC	4 cut(s)	6, 262, 483, 1170
CfoI	GCGC	2 cut(s)	823, 1054
Cfr13I	GGNCC	3 cut(s)	440, 732, 1067
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	4 cut(s)	22, 478, 803, 880
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	6 cut(s)	109, 180, 525, 533, 752, 1083
DpnI	GATC	3 cut(s)	129, 423, 598
DpnII	GATC	3 cut(s)	127, 421, 596
Eam1104I	CTCTTC	1 cut(s)	1052
EarI	CTCTTC	1 cut(s)	1052
Eco47I	GGWCC	3 cut(s)	440, 732, 1067
Eco81I	CCTNAGG	1 cut(s)	180
EcoNI	CCTNNNNNAGG	1 cut(s)	1074
EcoO109I	RGGNCCY	1 cut(s)	1067
EcoT22I	ATGCAT	1 cut(s)	808
FaeI	CATG	4 cut(s)	25, 481, 806, 883
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	4 cut(s)	21, 477, 802, 879
FauNDI	CATATG	1 cut(s)	717
Fnu4HI	GCNGC	5 cut(s)	294, 687, 706, 723, 819
FokI	GGATG	1 cut(s)	507
Fsp4HI	GCNGC	5 cut(s)	294, 687, 706, 723, 819
FspBI	CTAG	3 cut(s)	99, 188, 335
GlaI	GCGC	2 cut(s)	822, 1053
GluI	GCNGC	5 cut(s)	294, 687, 706, 723, 819
GsaI	CCCAGC	2 cut(s)	12, 693
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	2 cut(s)	823, 1054
Hin1II	CATG	4 cut(s)	25, 481, 806, 883
Hin6I	GCGC	2 cut(s)	821, 1052
HinP1I	GCGC	2 cut(s)	821, 1052
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	95, 305, 581, 710
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	637
Hpy166II	GTNNAC	1 cut(s)	1126
Hpy188I	TCNGA	5 cut(s)	112, 304, 990, 1108, 1164
Hpy188III	TCNNGA	7 cut(s)	65, 335, 515, 545, 873, 938, 1077
Hpy8I	GTNNAC	1 cut(s)	1126
Hpy99I	CGWCG	1 cut(s)	909
HpyAV	CCTTC	4 cut(s)	565, 873, 890, 1147
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	6 cut(s)	386, 457, 498, 806, 1030, 1168
HpyF3I	CTNAG	6 cut(s)	109, 180, 525, 533, 752, 1083
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	4 cut(s)	25, 481, 806, 883
HspAI	GCGC	2 cut(s)	821, 1052
Kpn2I	TCCGGA	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	661
Kzo9I	GATC	3 cut(s)	127, 421, 596
LmnI	GCTCC	2 cut(s)	781, 1052
Lsp1109I	GCAGC	4 cut(s)	280, 673, 709, 805
LweI	GCATC	4 cut(s)	485, 779, 815, 1155
MaeI	CTAG	3 cut(s)	99, 188, 335
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	129, 423, 598
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	3 cut(s)	127, 421, 596
MboII	GAAGA	6 cut(s)	137, 167, 284, 706, 1069, 1121
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	1 cut(s)	1091
MluCI	AATT	8 cut(s)	60, 162, 393, 410, 540, 576, 636, 1157
MlyI	GAGTC	2 cut(s)	89, 719
Mph1103I	ATGCAT	1 cut(s)	808
MroI	TCCGGA	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	1098
MseI	TTAA	2 cut(s)	210, 617
MspI	CCGG	1 cut(s)	65
MvnI	CGCG	2 cut(s)	1052, 1054
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	3 cut(s)	127, 421, 596
NlaIII	CATG	4 cut(s)	25, 481, 806, 883
NlaIV	GGNNCC	4 cut(s)	659, 734, 1048, 1068
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	1098
PfeI	GAWTC	2 cut(s)	305, 581
PkrI	GCNGC	5 cut(s)	295, 688, 707, 724, 820
PleI	GAGTC	2 cut(s)	89, 718
PpsI	GAGTC	2 cut(s)	89, 718
PpuMI	RGGWCCY	1 cut(s)	1067
PsiI	TTATAA	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	1067
PspFI	CCCAGC	2 cut(s)	8, 689
PspN4I	GGNNCC	4 cut(s)	659, 734, 1048, 1068
PspPI	GGNCC	3 cut(s)	440, 732, 1067
PspPPI	RGGWCCY	1 cut(s)	1067
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
SaqAI	TTAA	2 cut(s)	210, 617
SatI	GCNGC	5 cut(s)	294, 687, 706, 723, 819
Sau3AI	GATC	3 cut(s)	127, 421, 596
Sau96I	GGNCC	3 cut(s)	440, 732, 1067
SchI	GAGTC	2 cut(s)	89, 719
SduI	GDGCHC	1 cut(s)	1091
SfaNI	GCATC	4 cut(s)	485, 779, 815, 1155
SinI	GGWCC	3 cut(s)	440, 732, 1067
SmlI	CTYRAG	1 cut(s)	974
SmoI	CTYRAG	1 cut(s)	974
Sse9I	AATT	8 cut(s)	60, 162, 393, 410, 540, 576, 636, 1157
SsiI	CCGC	5 cut(s)	206, 705, 730, 1050, 1054
SspMI	CTAG	3 cut(s)	99, 188, 335
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	6 cut(s)	120, 289, 424, 544, 894, 907
TasI	AATT	8 cut(s)	60, 162, 393, 410, 540, 576, 636, 1157
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	305, 581
Tru1I	TTAA	2 cut(s)	210, 617
Tru9I	TTAA	2 cut(s)	210, 617
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	4 cut(s)	293, 686, 722, 818
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	138, 384, 534, 855
TspGWI	ACGGA	1 cut(s)	1106
VpaK11BI	GGWCC	3 cut(s)	440, 732, 1067
XagI	CCTNNNNNAGG	1 cut(s)	1074
XapI	RAATTY	2 cut(s)	636, 1157
XbaI	TCTAGA	1 cut(s)	334
XceI	RCATGY	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	1098
XspI	CTAG	3 cut(s)	99, 188, 335
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.